BAC Information

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BAC

Clone NameB6Ng01-245C11
Chromosome18 (Build37)
Map Location 78,768,903 - 78,770,066
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneRnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, EG620155
Downstream geneSetbp1, LOC100039242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245C11.bB6Ng01-245C11.g
ACCGA054110GA054111
length1,1991,150
definitionB6Ng01-245C11.b B6Ng01-245C11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgccaatttctgagtatatctatcccaattatacattctggaac
tggggaaatcaccacaggatgtgtccggggacctactggacctactgtga
gtcggacatcagtcaaaactccattaatcacctgccctccataagcccct
actttaactggagggccacaatgtttcttgggatcccctgggatcagtgt
caactcagaaccagtatccagtagaccccgaaaagtctgattatttcctt
ttccccagtgtacagttacccttgtaaaaggccgtaggtccctctgggga
agaactggagaaagggtaacagcaaaacctttgagtgtcttatcaagatc
cttcctcagaggaacctggccaccccttcattcaaggggttccggatctg
caaactgtctcaagtctggaaattgattcactggccgagattgctgttta
ccacgatctaatgtagcctttctttcatttgtttgagaatttttctgctt
atacagatcaaacaaatatgcagtaggcttcctatgtatttcattcctgg
aaacaccatgattgattagccagtaccaaaggtccaagcgagtcatgcca
ttataaatttcacctctcctgtgctgaccattactgggtatgttattata
aacattcttttgtctacgctgtccattataataactaggatcaccttgtc
tccggtgattcaatgctgccacctggcccttgttacctcgggatccaact
aaacccagtgaatttaattcatctaattgagcagaagcatctccaatgct
aagatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctg
gtgcccctctcaccaatttgcgtcttatagagctggtgaaaggcatatct
ttctggaccttcccattggtgggacaattatgctttaccacaatatatcc
actctagcattgcaatttccctaagtcttaaatcccttcatcacactaag
ccacggaatatcaggcattctcaggtcatttccagtaggccatcttttga
taacacctcagccacccattcaaacaactttggacaccgtttttaactat
gcgagcttccgtataaccctagatctcttacctcaaggaccagttcaaat
aagctcagcctgcctctaggatttatggttccttccaccccgtttattt
gaattcttccttttctatttccattttctcattacgaatgtcttttctat
aagacaaaagagaatctgtcattgattaaagggattaagaataagaacaa
taaaaatgaggatcatgttagtgacagggtatggggtgatttattattat
tacaacattttctttaaagttaaattgtattttggtcaacaagaaaaaga
aaaaaaatatttcagatcattgaacaagaatatatgacctaattaccatg
gcagtggcaagtcttcctaaatgtaattgtcaaaaaatttctgaagatgg
agctgcttgcgaaaggcttgggtttctctgtatgttgttgctggaccgta
atataaggactccctctttgcataggtgggactcattactgtcgggtgaa
ccttctagctaccaggttcttctgactgccagaaaaggaattttaaacac
ttggtgacatctagattacacccattcatttccaccgagccagagaacag
gtcttcagtatcctttaagagcgattccttcatggagcatctaggtctca
cctctctgcttccaaactggcagtggagaagatgcatgtctctaacctga
agactagcaaagaatccagagcttctctctgaggcttttctctccaactt
gtcccgtacatcagattgtctctctccttcacaggacactgatgtaaatg
tcatgctaaacccttgatctaagcaaactggttgccctcagcccactgga
gtccaggagcctgctaaatgctacaccgtggggaactgccccaatggatg
ttgcccacgttcctgctctcaagacagaatgtgtaaaatcttgggctgtg
tttctttaatatcagacatttcggccatgcagctctctatgctcacacaa
ccttgactgtgcagtccagttcaccttttccagggttcccaagatttttc
cagcacacggacccatttgggagccgcactagaactactttctttagaaa
gactcagttgatatggttggggcatctctcttacttctgtacataagcta
tagcattttcgaggcaagacggtttcaatggaaacaattcagaataatgg
gattgaccagagttctgctcatctgctctctctagtagcacctaggaaca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_78768903_78770066
seq2: B6Ng01-245C11.g_66_1215 (reverse)

seq1  TGTTCCTGAGTGCTACTAGAAGAAGCCAGGAAATGAGCAGACATCTGGGT  50
      |||||||  ||||||||||    ||  || | |||||||||  |||||  
seq2  TGTTCCTAGGTGCTACTAG----AGAGAGCAGATGAGCAGAACTCTGGTC  46

seq1  CATACCAATATATCTAAATGTTTTCCACTGAAACTGTCTTTGCTTTCTGA  100
       || ||| ||| ||| |||  |||||| |||||| |||||  ||    ||
seq2  AATCCCATTAT-TCTGAATTGTTTCCATTGAAACCGTCTTGCCT---CGA  92

seq1  AAATACTATAGGCTTATGTTACAGAAGTAAGGAGAGATGCCCCAACCATA  150
      |||| ||||| ||||||| ||||||||||| |||||||||||||||||||
seq2  AAATGCTATA-GCTTATG-TACAGAAGTAA-GAGAGATGCCCCAACCATA  139

seq1  TCAAACTGAGTCTTTCTAAAGAAAGTAGTTTCTAGTGGCGGCTCCCAAAT  200
      || ||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  TC-AACTGAGTCTTTCTAAAGAAAGTAG-TTCTAGT-GCGGCTCCCAAAT  186

seq1  GGGTCCGTGTGCTGGAAAAATTCTTGGGAACCCTGG-AAAGGTGAACTGG  249
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  GGGTCCGTGTGCTGGAAAAA-TCTTGGGAACCCTGGAAAAGGTGAACTGG  235

seq1  ACTGCACAGTCAAGGTTGTGTGAGCATAGAGAGCTGCATGGCCGAAATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACAGTCAAGGTTGTGTGAGCATAGAGAGCTGCATGGCCGAAATGT  285

seq1  CTGATATTAAAGAAACACAGCCCAAGATTTTACACATTCTGTCCTGAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGATATTAAAGAAACACAGCCCAAGATTTTACACATTCTGTCTTGAGAG  335

seq1  CAGGAACGTGGGCAACATCCATTGGGGCAGTTCCCCACGGTGTAGCATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACGTGGGCAACATCCATTGGGGCAGTTCCCCACGGTGTAGCATTT  385

seq1  AGCAGGCTCCTGGACTCCAGTGGGCTGAGGGCAACCAGTTTGCTTAGATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTCCTGGACTCCAGTGGGCTGAGGGCAACCAGTTTGCTTAGATC  435

seq1  AAGGGTTTAGCATGACATTTACATCAGTGTCCTGTGAAGGAGAGAGACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTTAGCATGACATTTACATCAGTGTCCTGTGAAGGAGAGAGACAA  485

seq1  TCTGATGTACGGGACAAGTTGGAGAGAAAAGCCTCAGAGAGAAGCTCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTACGGGACAAGTTGGAGAGAAAAGCCTCAGAGAGAAGCTCTGG  535

seq1  ATTCTTTGCTAGTCTTCAGGTTAGAGACATGCATCTTCTCCACTGCCAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTGCTAGTCTTCAGGTTAGAGACATGCATCTTCTCCACTGCCAGT  585

seq1  TTGGAAGCAGAGAGGTGAGACCTAGATGCTCCATGAAGGAATCGCTCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCAGAGAGGTGAGACCTAGATGCTCCATGAAGGAATCGCTCTTA  635

seq1  AAGGATACTGAAGACCTGTTCTCTGGCTCGGTGGAAATGAATGGGTGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATACTGAAGACCTGTTCTCTGGCTCGGTGGAAATGAATGGGTGTAA  685

seq1  TCTAGATGTCACCAAGTGTTTAAAATTCCTTTTCTGGCAGTCAGAAGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGTCACCAAGTGTTTAAAATTCCTTTTCTGGCAGTCAGAAGAAC  735

seq1  CTGGTAGCTAGAAGGTTCACCCGACAGTAATGAGTCCCACCTATGCAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCTAGAAGGTTCACCCGACAGTAATGAGTCCCACCTATGCAAAG  785

seq1  AGGGAGTCCTTATATTACGGTCCAGCAACAACATACAGAGAAACCCAAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTCCTTATATTACGGTCCAGCAACAACATACAGAGAAACCCAAGC  835

seq1  CTTTCGCAAGCAGCTCCATCTTCAGAAATTTTTTGACAATTACATTTAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCAAGCAGCTCCATCTTCAGAAATTTTTTGACAATTACATTTAGG  885

seq1  AAGACTTGCCACTGCCATGGTAATTAGGTCATATATTCTTGTTCAATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGCCACTGCCATGGTAATTAGGTCATATATTCTTGTTCAATGAT  935

seq1  CTGAAATATTTTTTTTCTTTTTCTTGTTGACCAAAATACAATTTAACTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATATTTTTTTTCTTTTTCTTGTTGACCAAAATACAATTTAACTTT  985

seq1  AAAGAAAATGTTGTAATAATAATAAATCACCCCATACCCTGTCACTAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGTTGTAATAATAATAAATCACCCCATACCCTGTCACTAACA  1035

seq1  TGATCCTCATTTTTATTGTTCTTATTCTTAATCCCTTTAATCAATGACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCATTTTTATTGTTCTTATTCTTAATCCCTTTAATCAATGACAG  1085

seq1  ATTCTCTTTTGTCTTATAGAAAAGACATTCGTAATGAGAAAATGGAAATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTGTCTTATAGAAAAGACATTCGTAATGAGAAAATGGAAATA  1135

seq1  GAAAAGGAAGAATTC  1164
      |||||||||||||||
seq2  GAAAAGGAAGAATTC  1150