BAC Information

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BAC

Clone NameB6Ng01-245J22
Chromosome18 (Build37)3 (Build37)
Map Location 87,458,244 - 87,459,083149,888,778 - 149,889,216
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245J22.bB6Ng01-245J22.g
ACCGA054457GA054458
length840960
definitionB6Ng01-245J22.b B6Ng01-245J22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,458,244 - 87,459,083)(149,888,778 - 149,889,216)
sequence
gaattcaattttatgtgctgaaaaattataccctagatacagggagaaca
tgcaaaggaaagcactgctacagtcatggaaagtgaaacttaaaaacaaa
tcccatactttttattctttaaggcgcctgaagagatgtttttgtcaatg
attggagaggctagtaggtaaagaacatagcagacctcttctcattatgg
cagttcaggatctctaggcactgcttacaagagctttgtggtctgggtcc
actaaagacttgggtctgccaaatatagttctcaatgattatccctctcc
atcctatcccagaatctgaggcagtctggcagagatcacttggcagcaat
cacacattaaccaagtttacttacttgtggttcaggacatctttcctttt
cagaaaactttttttttcactttatgctgtgaacaaaataaaaaaaaaaa
gggggtctgaggggccctggggaagaactgaaggaaaaatatgcccacac
cccaccagagtttccctattctctggtcagtcaggcatgggagggctgct
atctaccctatccactcatccctgggtgggcattcctttatcccactctt
cagggggtggtcaaggggcagccctgcctggggacccccccctcccccgg
agctactttgctaaagccaccagggttgtgagagagagggaagagggaag
aagttcccaacacttaccagagtgcacagcggaacttgaaggaacagagc
agagactatggttttagagctttattatagaaacgcaggggaaagagaga
aggtagaaaggatggagagagaaagagagagagagagaga

gaattcattcagcttatacatctacattgctgttaatcaccaaagaaagt
caggactggaactcaagcaggtagggtagcaggaggtgatacagaggcca
tggaaagatgttacatgctggcttgcttcccttggcttattcaacttgct
ttcttattggaccaggaccaaggactaccagccttgggatcgaaccaccc
acaatgggctctcccacccttcatcactaactgagaaaatgctttacgct
ggacctcatggaggcatttcctcaagtgaggctcctttctctgtgataac
tccagcctgtttcaagtaggcacacaaaaacagctagtacatatggtaca
tttttatttcttaaaagcattttgagaattctatacactgatttccctag
tggctgaggcagtttgcaatcccaacaacagtgaatgagggtactttttt
ttcagtatctcctccagcaattgcagtctgctgtctttttggtcttttcc
atcctgagtggtggatggaattgcccagttttttattttgcattttccta
gttactaagaataattctctctctcctctctctctctctctctctctctc
tctctctctctctctctctctcacacgcacacacacacacacacagacac
actcacacactttcactctctctctccctcagtgtgtgtgtgtgtgtgtg
tgaaggaatttcttaagtgtttgagtttattttctcactttgagaggagc
gagatggtctcatggatttctttatttaggatgatttgaatatagagctt
gaaacaattctgttgcagtcaggaataacgagtgcgttttactacgaccc
aacgtactatttagttcagtatctaagaaaaaaaataaagaagcagtagg
aagtggggattgaattcaactatccctgtgtcatattacatatatttttc
taaaagtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87458244_87459083
seq2: B6Ng01-245J22.b_48_887 (reverse)

seq1  TCTCTCTCTCTCTCTCTTTCTCTCTCCATCCTTTCTACCTTCTCTCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTTTCTCTCTCCATCCTTTCTACCTTCTCTCTTTC  50

seq1  CCCTGCGTTTCTATAATAAAGCTCTAAAACCATAGTCTCTGCTCTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCGTTTCTATAATAAAGCTCTAAAACCATAGTCTCTGCTCTGTTCC  100

seq1  TTCAAGTTCCGCTGTGCACTCTGGTAAGTGTTGGGAACTTCTTCCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCCGCTGTGCACTCTGGTAAGTGTTGGGAACTTCTTCCCTCTT  150

seq1  CCCTCTCTCTCACAACCCTGGTGGCTTTAGCAAAGTAGCTCCGGGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTCTCACAACCCTGGTGGCTTTAGCAAAGTAGCTCCGGGGGAGG  200

seq1  GGGGGGTCCCCAGGCAGGGCTGCCCCTTGACCACCCCCTGAAGAGTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGTCCCCAGGCAGGGCTGCCCCTTGACCACCCCCTGAAGAGTGGGA  250

seq1  TAAAGGAATGCCCACCCAGGGATGAGTGGATAGGGTAGATAGCAGCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATGCCCACCCAGGGATGAGTGGATAGGGTAGATAGCAGCCCTC  300

seq1  CCATGCCTGACTGACCAGAGAATAGGGAAACTCTGGTGGGGTGTGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGACTGACCAGAGAATAGGGAAACTCTGGTGGGGTGTGGGCAT  350

seq1  ATTTTTCCTTCAGTTCTTCCCCAGGGCCCCTCAGACCCCCTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCCTTCAGTTCTTCCCCAGGGCCCCTCAGACCCCCTTTTTTTTTT  400

seq1  TATTTTGTTCACAGCATAAAGTGAAAAAAAAAGTTTTCTGAAAAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTCACAGCATAAAGTGAAAAAAAAAGTTTTCTGAAAAGGAAAG  450

seq1  ATGTCCTGAACCACAAGTAAGTAAACTTGGTTAATGTGTGATTGCTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGAACCACAAGTAAGTAAACTTGGTTAATGTGTGATTGCTGCCA  500

seq1  AGTGATCTCTGCCAGACTGCCTCAGATTCTGGGATAGGATGGAGAGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCTCTGCCAGACTGCCTCAGATTCTGGGATAGGATGGAGAGGGAT  550

seq1  AATCATTGAGAACTATATTTGGCAGACCCAAGTCTTTAGTGGACCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGAGAACTATATTTGGCAGACCCAAGTCTTTAGTGGACCCAGAC  600

seq1  CACAAAGCTCTTGTAAGCAGTGCCTAGAGATCCTGAACTGCCATAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCTCTTGTAAGCAGTGCCTAGAGATCCTGAACTGCCATAATGAG  650

seq1  AAGAGGTCTGCTATGTTCTTTACCTACTAGCCTCTCCAATCATTGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCTGCTATGTTCTTTACCTACTAGCCTCTCCAATCATTGACAAA  700

seq1  AACATCTCTTCAGGCGCCTTAAAGAATAAAAAGTATGGGATTTGTTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTCTTCAGGCGCCTTAAAGAATAAAAAGTATGGGATTTGTTTTTA  750

seq1  AGTTTCACTTTCCATGACTGTAGCAGTGCTTTCCTTTGCATGTTCTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACTTTCCATGACTGTAGCAGTGCTTTCCTTTGCATGTTCTCCCT  800

seq1  GTATCTAGGGTATAATTTTTCAGCACATAAAATTGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGGGTATAATTTTTCAGCACATAAAATTGAATTC  840


seq1: chr3_149888778_149889216
seq2: B6Ng01-245J22.g_687_1025

seq1  CACACGCACACACACACACACACACACACACACTCACACACACAAAATGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATATATTACACACGGATACACACAGACATAAACACATAATGTCATCTCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCCTATCCCTCCCCCTCTTCCTCTCCCTCCCCCCCCTCTCTCTCTCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCTCACACACACACACACACACACACACACACACAC--ACACCCT-A  197
      | | | |||||||||||||||||| |||||| |||||||   ||| ||  
seq2  CACACGCACACACACACACACACAGACACACTCACACACTTTCACTCTCT  50

seq1  CTCACCAAAAG-------GCATCATCATCCTTACCCATTCCT------TT  234
      ||| ||   ||       |  |     |    |   ||| ||      ||
seq2  CTCTCCCTCAGTGTGTGTGTGTGTGTGTGTGAAGGAATTTCTTAAGTGTT  100

seq1  TCATTACAATTAATCAAAGCATTGACTGGGTCTTTCTGCTCTTCTCTCTC  284
      | | |  | ||  |||   | ||||  ||  |     | |  ||||    
seq2  TGAGTTTATTTTCTCA---CTTTGAGAGGAGC---GAGATGGTCTCATGG  144

seq1  ATTTGCCTTTAGTGAGGATCTGAGCGTTTGCCCATCTGTTCAGGCAAACT  334
      ||||  ||||| | ||||  |||   ||||   ||  |  |  | |||| 
seq2  ATTT--CTTTATTTAGGA--TGA---TTTGAATAT-AGAGCTTG-AAAC-  184

seq1  TTATTCCTTT--ATTGAGGATT-----CTGCTTTTTCCTCATCTTCCCCA  377
        ||||  ||  | | |||| |      ||| |||| ||   |  ||| |
seq2  -AATTCTGTTGCAGTCAGGAATAACGAGTGCGTTTTACT--ACGACCCAA  231

seq1  -GTTGAATT---TTCTCCCTCT----------------------------  395
       ||   |||   |||    |||                            
seq2  CGTACTATTTAGTTCAGTATCTAAGAAAAAAAATAAAGAAGCAGTAGGAA  281

seq1  ------------TCCAACACTCTCCATGGCACA--GCAGTTCTTTTTCTA  431
                  | ||||  || |  || || |   ||  | ||||||||
seq2  GTGGGGATTGAATTCAACTATCCCTGTGTCATATTACATATATTTTTCTA  331

seq1  AAAGTCTC  439
      ||||||||
seq2  AAAGTCTC  339


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