BAC Information

Click to search

BAC

Clone NameB6Ng01-246L23
Chromosome18 (Build37)
Map Location 58,716,890 - 58,878,647
singlet/doubletdoublet
Overlap geneSlc27a6, Isoc1
Upstream gene1700011I03Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneAdamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246L23.bB6Ng01-246L23.g
ACCGA055275GA055276
length5851,118
definitionB6Ng01-246L23.b B6Ng01-246L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,878,063 - 58,878,647)(58,716,890 - 58,717,999)
sequence
gaattcaacaggaaaaagtccaagaattgtagataacataaaaagttata
ttttttataagaatacacccatgctgggtgtggtagaacaaatcccagca
ttttcgagataaagccaagaggattagggactcaagggcagccttagtta
tataatgattctgaggacagcatggtctacagaggatcctgcctcaaaac
aaaacccaggaatgtggttttagtaacctggataaagcagaatgcattct
tgggacatctacattctctctcttcccatgggcattgcttagtattggtt
ttggtgccacttgtgttactttaaatgaaattgctcttttctcttttttg
cagtgctgaggattcagcttagagtcttgtgcatgtcaggcaagcactct
gccactaagctacattctcagctttaaataatagaacttcttagtgtatt
aatatattctaatgttttatattataaaattcattgtcctagctattact
gcacttgtctgacatcctaaatttaatccctgaaactcacagtagaagga
aaaaaccacttctcataagctgtcctctggggtgt

gaattcaagagatacagggctgattctgttatttcatcagccttgacaaa
tgtctcatgaataagaaagctatcaagtttttacgtgttttttttttccc
atagtaactttatggagaatgaatgcatttggataacagaacatttaaag
gcgagattcacacattcttatatccattcctgcacttaattacatactct
gcaggctaggatttgacagagcaaggctgggctgcccatcagtcaggagc
aggctcgtgacagacaataatcttttcccttgttttattcccccttcatt
ttctttcagttacgttcttccttccctgatgtgagttgagatatctacta
ttacacatattcacaatgaaaaacataaatctctgatttcaatgagtaat
taactaaggaaccagggaggtgggttgctcaataaactgaaatagctacc
atgatagtaacttggtacaatctaaaaggtttagatcatttcttctgcac
agagctaaaaatgtcatgcagatgtccctggtaaagagcttggtaaaatt
acttaggtatcttagattaattgatacataccagttcttcatataggatt
tcagaatcccgtgagagtatggaacataatctaatttctgctttattgat
gactaaaaaggtagacatttcctgtttgcttttctcacatattcacacat
agctgtaggcacaagaaagggctggccgtcaacaccgtcattcttcctac
atctctgtgtccttccaacctatcttgtgattcagtcaagtcgaaatgtt
tattgtcaagcacaggtttcagctagtttaggggcataggaacagagaag
ccaagagtgtcccttcgagtgctgtctggtgatttcctctgccctatgtt
ccaatttcactttgtaaagaggtgtgtttgtacactgaggcttcagttga
cctgtggtaaggagtagatcatgatcatgcagaatttttgaccagtgtgg
ctaaacagtgttgatcatgactagagctgtgaattgtggccagaaaataa
gcagtggctttattatctgtgacatacctctgggctttttattcaatgcc
ttacatcactacacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58878063_58878647
seq2: B6Ng01-246L23.b_50_634 (reverse)

seq1  ACACCCCAGAGGACAGCTTATGAGAAGTGGTTTTTTCCTTCTACTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCAGAGGACAGCTTATGAGAAGTGGTTTTTTCCTTCTACTGTGAG  50

seq1  TTTCAGGGATTAAATTTAGGATGTCAGACAAGTGCAGTAATAGCTAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGATTAAATTTAGGATGTCAGACAAGTGCAGTAATAGCTAGGAC  100

seq1  AATGAATTTTATAATATAAAACATTAGAATATATTAATACACTAAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTTATAATATAAAACATTAGAATATATTAATACACTAAGAAGT  150

seq1  TCTATTATTTAAAGCTGAGAATGTAGCTTAGTGGCAGAGTGCTTGCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATTTAAAGCTGAGAATGTAGCTTAGTGGCAGAGTGCTTGCCTGA  200

seq1  CATGCACAAGACTCTAAGCTGAATCCTCAGCACTGCAAAAAAGAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAGACTCTAAGCTGAATCCTCAGCACTGCAAAAAAGAGAAAAG  250

seq1  AGCAATTTCATTTAAAGTAACACAAGTGGCACCAAAACCAATACTAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTCATTTAAAGTAACACAAGTGGCACCAAAACCAATACTAAGCA  300

seq1  ATGCCCATGGGAAGAGAGAGAATGTAGATGTCCCAAGAATGCATTCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATGGGAAGAGAGAGAATGTAGATGTCCCAAGAATGCATTCTGCT  350

seq1  TTATCCAGGTTACTAAAACCACATTCCTGGGTTTTGTTTTGAGGCAGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGGTTACTAAAACCACATTCCTGGGTTTTGTTTTGAGGCAGGAT  400

seq1  CCTCTGTAGACCATGCTGTCCTCAGAATCATTATATAACTAAGGCTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAGACCATGCTGTCCTCAGAATCATTATATAACTAAGGCTGCCC  450

seq1  TTGAGTCCCTAATCCTCTTGGCTTTATCTCGAAAATGCTGGGATTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCCCTAATCCTCTTGGCTTTATCTCGAAAATGCTGGGATTTGTTC  500

seq1  TACCACACCCAGCATGGGTGTATTCTTATAAAAAATATAACTTTTTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCCAGCATGGGTGTATTCTTATAAAAAATATAACTTTTTATGT  550

seq1  TATCTACAATTCTTGGACTTTTTCCTGTTGAATTC  585
      |||||||||||||||||||||||||||||||||||
seq2  TATCTACAATTCTTGGACTTTTTCCTGTTGAATTC  585


seq1: chr18_58716890_58717999
seq2: B6Ng01-246L23.g_67_1184

seq1  GAATTCAAGAGATACAGGGCTGATTCTGTTATTTCATCAGCCTTGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGATACAGGGCTGATTCTGTTATTTCATCAGCCTTGACAAA  50

seq1  TGTCTCATGAATAAGAAAGCTATCAAGTTTTTACGTGTTTTTTTTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATGAATAAGAAAGCTATCAAGTTTTTACGTGTTTTTTTTTTCCC  100

seq1  ATAGTAACTTTATGGAGAATGAATGCATTTGGATAACAGAACATTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTTTATGGAGAATGAATGCATTTGGATAACAGAACATTTAAAG  150

seq1  GCGAGATTCACACATTCTTATATCCATTCCTGCACTTAATTACATACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATTCACACATTCTTATATCCATTCCTGCACTTAATTACATACTCT  200

seq1  GCAGGCTAGGATTTGACAGAGCAAGGCTGGGCTGCCCATCAGTCAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAGGATTTGACAGAGCAAGGCTGGGCTGCCCATCAGTCAGGAGC  250

seq1  AGGCTCGTGACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGTGACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATT  300

seq1  TTCTTTCAGTTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAGTTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTA  350

seq1  TTACACATATTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATATTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAAT  400

seq1  TAACTAAGGAACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGAACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACC  450

seq1  ATGATAGTAACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTAACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCAC  500

seq1  AGAGCTAAAAATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAAATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATT  550

seq1  ACTTAGGTATCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTATCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATT  600

seq1  TCAGAATCCCGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCCCGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGAT  650

seq1  GACTAAAAAGGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAAGGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACAT  700

seq1  AGCTGTAGGCACAAG-AAGGGCTGGCCGTCAACACCGTCATTCTTCCTAC  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCTGTAGGCACAAGAAAGGGCTGGCCGTCAACACCGTCATTCTTCCTAC  750

seq1  ATCTCTGTGTCCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGTCCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTT  800

seq1  TATTGTCAAGCACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAAGCACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAAG  850

seq1  CCAAGAGTGTCCC-TCGAGTGCTGTCTGGTGATTTCCTCTGCCCTATGTT  898
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGTGTCCCTTCGAGTGCTGTCTGGTGATTTCCTCTGCCCTATGTT  900

seq1  CC-ATTTCACTTTGTAAAGAGGTGTGTTTGTACACTGAGGCTTCAG-TGA  946
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAATTTCACTTTGTAAAGAGGTGTGTTTGTACACTGAGGCTTCAGTTGA  950

seq1  CCTGTGGTAAGGAGTAGGATCAATGAATCATGCAGAA-TTTTGA-CAGTG  994
      |||||||||||||||| |||| ||| ||||||||||| |||||| |||||
seq2  CCTGTGGTAAGGAGTA-GATC-ATG-ATCATGCAGAATTTTTGACCAGTG  997

seq1  TGGCTAAACAGTGTTGATCAATGACTAGAGCTGTGAA-TGTGGCAGAAAA  1043
      ||||||||||||||||||| ||||||||||||||||| ||||||   |||
seq2  TGGCTAAACAGTGTTGATC-ATGACTAGAGCTGTGAATTGTGGCCAGAAA  1046

seq1  ATAAGCAGTG--TTTATTATCTGTGGACATA-CTCTGG--CTTTTATTC-  1087
      ||||||||||  |||||||||||| |||||| ||||||   |||||||| 
seq2  ATAAGCAGTGGCTTTATTATCTGT-GACATACCTCTGGGCTTTTTATTCA  1095

seq1  ATGGCTTACATCACTACACATCA  1110
      ||| |||||||||||||||||||
seq2  ATGCCTTACATCACTACACATCA  1118


| Home | SequenceCutter | Blast | Download |