BAC Information

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BAC

Clone NameB6Ng01-247L22
Chromosome9 (Build37)18 (Build37)
Map Location 21,070,508 - 21,071,61822,927,318 - 22,927,993
singlet/doubletsingletsinglet
Overlap geneAtg4d
Upstream geneOlfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8
Downstream geneBC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247L22.bB6Ng01-247L22.g
ACCGA056001GA056002
length1,114953
definitionB6Ng01-247L22.b B6Ng01-247L22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,070,508 - 21,071,618)(22,927,318 - 22,927,993)
sequence
gaattccactgcactgttcaactcacagtctgcagcagttttaaagggct
gagccagaagccaggcacttgcagcctgcatatacacaactcacctctag
gcagaaaatgcaggagcaggccctgggccagcatcatctgaccacttcgt
aacatacatccccagccacagtctgaggtcaggctgcctccagcaagggg
tgggaagtcccggcgatatgtgagccatagtcgagatacaaagtcccttt
gaaaccgctggatgtcacctatgagaaccaactggtcagcctggcaatca
aggagaaccctaggagacttcccctaccctggttccagatttgacacctc
accctctccctcgaaatggtagcatcgcccgcagaggtgaacagtggaga
tcttgctgaagctggtccggcttttaactgcccaacctggggaaacatgg
agtagctcgcagcaatttaaagcactcaagtatcagcaatgggtcttcca
ttccccagtgttgaactgggcctgatcctagctgagatgtcagggcggcg
gctctgcaaaatccatgccacaccacatctgtctggaacacaggtgggac
ttagtcacatcttcataaggacccactatcaacccagggccgttctattc
tgactgttgggttttgctgtaaatctataaagcacatttttattttgtgt
atgtgagcttgtgtatatatgtggacaagcaagcaccacagtttgggtct
ggagtatagaacattgacaggagtgggggctctccttccaccattggggt
ccaggctggagctgaggtccttaagcttggtgacaatgcctttaactact
gcggcatctcactagcctttttccaattttttttttaaaatatccactgg
tgttttgcctgcatgtatacctgtgtgagggtgttagatcccatgaaact
ggagttacagacaattgtgaattgccatgtggttgctggtattgtttcct
ctggaggaacagccatgctgctgagcagtctcttcagccccctggttttt
ccgatttttctgagaccagtctcatgacgaagctcagttcagcctgtacc
ttattatattagtc
gaattcactctgtagatcaggatggcctcaaactcttttgtgtcctgaat
gctgggatcaaaggcgtataccgccacccagcttttcttttctttcctct
tcttttcttttcttttcttttctgagacaggctcttatgtagctcagttt
gcgtctctatataggacgaccctgagcccaatcctcttccctccactctg
gccagggcgcatgtgtgcatgcgtgcgtgcgtgcgtggtgcgtggtgcgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctacccatcacactgaagca
gccaggacagatcacaaacactagtgacctagacttctatttagcctttt
taggtatgaggggagaaaaaaaaatggtcagaaagtttgttaaatacttc
taaagcatgagttgtagcagtggtaaagcatttgtttgtctcataatgtt
cagagcccctggttagaatttcattaattgctgaaaggaataaaacatct
ccacatgtgtaagcacacatgtatcatttggaatgtaaaaaacatcgtgc
atgtattgtcaatgttgttggagttatgtagataaaacaacagtagaaat
tcacaatatttttatttccagtttttaccccaaagtagtcaatgccaggc
aaacttatcttctataaagcacaacagaatagatatacagagttaacata
cctcgggcaacaggggcttagtttccacttacgaactttcattccatctt
attttcaaaggctactagttgttagatagcagataagtatttccttacat
tcataagatagccattctcacaagccaaaagcagcaactgcaccttcaag
actcattaagcctcacattcacatcagtagtgacagaagaaaaccgaaca
cagatgacatggtgacagtcggcttccccctgatttctctcatagatcct
tat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21070508_21071618
seq2: B6Ng01-247L22.b_44_1157 (reverse)

seq1  GACT-ATATAATAAGTTCCAGGCTGACTTGAGC-TCCTCATGAGACTGGG  48
      |||| |||||||||| | ||||||||  ||||| || |||||||||| ||
seq2  GACTAATATAATAAGGTACAGGCTGAACTGAGCTTCGTCATGAGACT-GG  49

seq1  TCTCA-AAAAATCGGAAAA--CAGGGGGCTGGAGAGACTGCTCAGCAGCC  95
      ||||| |||||||||||||  |||||||||| |||||||||||||||| |
seq2  TCTCAGAAAAATCGGAAAAACCAGGGGGCTGAAGAGACTGCTCAGCAG-C  98

seq1  TTGGCTGTTCCTCCAGAGGAACAATTACCAGCACCCACATGGCAATTCAC  145
       ||||||||||||||||||||  | |||||||| ||||||||||||||||
seq2  ATGGCTGTTCCTCCAGAGGAAACAATACCAGCAACCACATGGCAATTCAC  148

seq1  AATTGTCTGTAACTCCAGTTTCATGGGATCTAACACCCTCACACAGGTAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTGTAACTCCAGTTTCATGGGATCTAACACCCTCACACAGGTAT  198

seq1  ACATGCAGGCAAAACACCAGTGGATATTTT-AAAAAAAAATTGGAAAAAG  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATGCAGGCAAAACACCAGTGGATATTTTAAAAAAAAAATTGGAAAAAG  248

seq1  GCTAGTGAGATGCCGCAGTAGTTAAAGGCATTTGTCACCAAGCTTAAGGA  294
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTAGTGAGATGCCGCAGTAGTTAAAGGCA-TTGTCACCAAGCTTAAGGA  297

seq1  CCTCAGCTCCAGCCTGGACCCCAATGGTGGAAGGAGAGCCCCCACTCCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTCCAGCCTGGACCCCAATGGTGGAAGGAGAGCCCCCACTCCTG  347

seq1  TCAATGTTCTATACTCCAGACCCAAACTGTGGTGCTTGCTTGTCCACATA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTCTATACTCCAGACCCAAACTGTGGTGCTTGCTTGTCCACATA  397

seq1  TATACACAAGCTCACATACACAAAATAAAAATGTGCTTTATAGATTTACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACAAGCTCACATACACAAAATAAAAATGTGCTTTATAGATTTACA  447

seq1  GCAAAACCCAACAGTCAGAATAGAACGGCCCTGGGTTGATAGTGGGTCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCCAACAGTCAGAATAGAACGGCCCTGGGTTGATAGTGGGTCCT  497

seq1  TATGAAGATGTGACTAAGTCCCACCTGTGTTCCAGACAGATGTGGTGTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGATGTGACTAAGTCCCACCTGTGTTCCAGACAGATGTGGTGTGG  547

seq1  CATGGATTTTGCAGAGCCGCCGCCCTGACATCTCAGCTAGGATCAGGCCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTTGCAGAGCCGCCGCCCTGACATCTCAGCTAGGATCAGGCCC  597

seq1  AGTTCAACACTGGGGAATGGAAGACCCATTGCTGATACTTGAGTGCTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAACACTGGGGAATGGAAGACCCATTGCTGATACTTGAGTGCTTTA  647

seq1  AATTGCTGCGAGCTACTCCATGTTTCCCCAGGTTGGGCAGTTAAAAGCCG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGCGAGCTACTCCATGTTTCCCCAGGTTGGGCAGTTAAAAGCCG  697

seq1  GACCAGCTTCAGCAAGATCTCCACTGTTCACCTCTGCGGGCGATGCTACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTTCAGCAAGATCTCCACTGTTCACCTCTGCGGGCGATGCTACC  747

seq1  ATTTCGAGGGAGAGGGTGAGGTGTCAAATCTGGAACCAGGGTAGGGGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGAGGGAGAGGGTGAGGTGTCAAATCTGGAACCAGGGTAGGGGAAG  797

seq1  TCTCCTAGGGTTCTCCTTGATTGCCAGGCTGACCAGTTGGTTCTCATAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGGGTTCTCCTTGATTGCCAGGCTGACCAGTTGGTTCTCATAGG  847

seq1  TGACATCCAGCGGTTTCAAAGGGACTTTGTATCTCGACTATGGCTCACAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCAGCGGTTTCAAAGGGACTTTGTATCTCGACTATGGCTCACAT  897

seq1  ATCGCCGGGACTTCCCACCCCTTGCTGGAGGCAGCCTGACCTCAGACTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCCGGGACTTCCCACCCCTTGCTGGAGGCAGCCTGACCTCAGACTGT  947

seq1  GGCTGGGGATGTATGTTACGAAGTGGTCAGATGATGCTGGCCCAGGGCCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGATGTATGTTACGAAGTGGTCAGATGATGCTGGCCCAGGGCCT  997

seq1  GCTCCTGCATTTTCTGCCTAGAGGTGAGTTGTGTATATGCAGGCTGCAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCATTTTCTGCCTAGAGGTGAGTTGTGTATATGCAGGCTGCAAG  1047

seq1  TGCCTGGCTTCTGGCTCAGCCCTTTAAAACTGCTGCAGACTGTGAGTTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGCTTCTGGCTCAGCCCTTTAAAACTGCTGCAGACTGTGAGTTGA  1097

seq1  ACAGTGCAGTGGAATTC  1111
      |||||||||||||||||
seq2  ACAGTGCAGTGGAATTC  1114

seq1: chr18_22927318_22927993
seq2: B6Ng01-247L22.g_346_1019

seq1  TCTACCCATCACACTGAAGCAGCCAGGACAGATCACAAACACTAGTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCATCACACTGAAGCAGCCAGGACAGATCACAAACACTAGTGACC  50

seq1  TAGACTTCTATTTAGCCTTTTTAGGTATGAGGGGAGAAAAAAAAATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTCTATTTAGCCTTTTTAGGTATGAGGGGAGAAAAAAAAATGGTC  100

seq1  AGAAAGTTTGTTAAATACTTCTAAAGCATGAGTTGTAGCAGTGGTAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTGTTAAATACTTCTAAAGCATGAGTTGTAGCAGTGGTAAAGC  150

seq1  ATTTGTTTGTCTCATAATGTTCAGAGCCCCTGGTTAGAATTTCATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGTCTCATAATGTTCAGAGCCCCTGGTTAGAATTTCATTAATT  200

seq1  GCTGAAAGGAATAAAACATCTCCACATGTGTAAGCACACATGTATCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGGAATAAAACATCTCCACATGTGTAAGCACACATGTATCATTT  250

seq1  GGAATGTAAAAAACATCGTGCATGTATTGTCAATGTTGTTGGAGTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTAAAAAACATCGTGCATGTATTGTCAATGTTGTTGGAGTTATGT  300

seq1  AGATAAAACAACAGTAGAAATTCACAATATTTTTATTTCCAGTTTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAACAGTAGAAATTCACAATATTTTTATTTCCAGTTTTTACC  350

seq1  CCAAAGTAGTCAATGCCAGGCAAACTTATCTTCTATAAAGCACAACAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTAGTCAATGCCAGGCAAACTTATCTTCTATAAAGCACAACAGAA  400

seq1  TAGATATACAGAGTTAACATACCTCGGGCAACAGGGGCTTAGTTTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATACAGAGTTAACATACCTCGGGCAACAGGGGCTTAGTTTCCACT  450

seq1  TACGAACTTTCATTCCATCTTATTTTTCAAAGGCTACTAGTTGTTAGATA  500
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACGAACTTTCATTCCATCTTA-TTTTCAAAGGCTACTAGTTGTTAGATA  499

seq1  GCAGATAAGGTATTTCCTTACATTCATAAGATAGCCATTCTCACAAGCCA  550
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAA-GTATTTCCTTACATTCATAAGATAGCCATTCTCACAAGCCA  548

seq1  AAAGCAGCAACTGCACCTTCAAGACTCATT-AGCCTCACATTCACATCAG  599
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGCAGCAACTGCACCTTCAAGACTCATTAAGCCTCACATTCACATCAG  598

seq1  TAGTGACAGAAAGAAAACGAACACAGATGACAT-GTGACAGTCGGCTTCT  648
      |||||||||||  ||| |||||||||||||||| ||||||||||||||| 
seq2  TAGTGACAGAAGAAAACCGAACACAGATGACATGGTGACAGTCGGCTTCC  648

seq1  CCCTGATTTTCTCTCATAGTATCCTTAT  676
      |||||| |||||||||||| ||||||||
seq2  CCCTGA-TTTCTCTCATAG-ATCCTTAT  674