BAC Information

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BAC

Clone NameB6Ng01-248F06
Chromosome1 (Build37)18 (Build37)
Map Location 186,064,333 - 186,064,91229,052,975 - 29,054,062
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666649, 1700056E22Rik, Dusp10
Downstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248F06.bB6Ng01-248F06.g
ACCGA056434GA056435
length2811,086
definitionB6Ng01-248F06.b B6Ng01-248F06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(186,064,333 - 186,064,912)(29,052,975 - 29,054,062)
sequence
atcacccatcaggtccctggggtttcagacctttgctcaactggagacca
ggctgtctgtgtgcagcccactacccacaagtcaccacacagggggatac
catttcagatgcagcaggatcagtaacttgtacacacacacacacacaca
cacacacacacacacacacacacaaatgggggaatgagaatgagtgacat
gttttgagcagtaaaatgaagagaattcactgcttgcgagaacatagact
atgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaaatggaacttcagaaatgtaaatgcacatttaggcatatatat
atatatatatatatatatatatatatatatatatacacataaatatactt
atattgatatctcatcaatgcataaaggagaaataactaattagaaggta
gctcagaaataaaacacaaatccatgtgaacctcagtgttctaacgctta
tgttcagacagggctgggcagcgactgtttataagtctcctctgcattca
caacttatttatataattttgcctccagagcacagtgaatagccaaagca
attaacaccagattttacttctgcttccagactttatgctttttctggaa
acaagcaaaataatacatgctctgagctggagttaatttttttctttcaa
atttgtatctatttgaaatgttttttattgttcaattcataataataata
ataaactacctaaagtcttgtataaggcaaagaactcagatttatatttt
gtttaaagtgtcttgatacactatagtacaaggttcacagaggcactcta
acttggagtaaaatgtaggttaattaatattcatgcttaagttatctgaa
ttaagaattaaggaaaagcagctgaggcagcctccttccaaatactccta
tgcactgtccccactgccaagtctagctaggctgaaattaaacacatttg
atcaccagtgttgtgttttcttttttacagagcaggatgaaaactttgca
ttactgttttaggaaacctgaattgttgatgggttccatttccatttcaa
aagaagaaacccacaagctaatattttcccctcattgtcagtgaaagtta
aaaagcaagccaaataaaactaccaaaaacaaaacaaaaccctaaagtgc
caaggagcaatgtttataagttttcaataggagctgaaaaacaccaataa
agtttggattcagctcaatgtaccatcaacccaaggcagcctcccccgcc
cctgctcttttttaatggtcaattttgtctggtctctgaagatctatgag
agaaaattaccaaggcagaatgttgcattcaattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_186064333_186064912
seq2: B6Ng01-248F06.b_201_331 (reverse)

seq1  CACACACACACACACACACACACACACACATACATCAATCAAAAGGGAAA  50
      |||||||||||||||||||||||||||||||                   
seq2  CACACACACACACACACACACACACACACAT-------------------  31

seq1  CTAATGCAATCCAGGATGTAGCAAACAAGAAATGCCTGAGACCCCTATTG  100
             | || | | | | |||| ||   ||| |               
seq2  -------AGTCTATGTTCTCGCAAGCAGTGAATTC---------------  59

seq1  GTATAGAAGTTACT--CCAAACGATGGTTCAAGCTCTAGTACAGGAAACG  148
       | |  |  |||||   ||||  |||  |||  |||           |  
seq2  -TCTTCATTTTACTGCTCAAAACATG--TCA--CTC-----------ATT  93

seq1  CACAAGGCTGCTGCACAGTTGCTTGCTGTCAAGCACTACTTAGATGACTG  198
      | ||   |     | || |||  || |||               ||  ||
seq2  CTCATTCC-----CCCATTTGTGTG-TGT--------------GTGTGTG  123

seq1  TATGTGCTGCACTGTTGTGTCACGGATGCCGCCGTGTTATCATGAGCACT  248
      | |||| ||                                         
seq2  TGTGTG-TG-----------------------------------------  131

seq1  ACCACACACAGGTGAGCCATGAATTCCCTTCTCACATTGTGATGGCCACA  298
                                                        
seq2  --------------------------------------------------  131

seq1  AGGTCGCTGGATGAAAGGAACATTTGAGTTCATTTTTACTTATTTATTTT  348
                                                        
seq2  --------------------------------------------------  131

seq1  ATTTTTATTTTACCTCTCATGCATGCATATGTATGGTTTTGTGTGTGTGT  398
                                                        
seq2  --------------------------------------------------  131

seq1  GTGGTGTGTGTGAATTCAAACATATGTGTGCCCTGGTGGAACATGTGGAA  448
                                                        
seq2  --------------------------------------------------  131

seq1  GTCTGAGGACAACCTCTCTTGGACCTTGTCTTCTATAGTGTCTTTAAAAT  498
                                                        
seq2  --------------------------------------------------  131

seq1  AAATGAATCGCCATTACATTTATGTCTTTGTTATTCTCCTCCCCCCTTTG  548
                                                        
seq2  --------------------------------------------------  131

seq1  TGTGTGTGTGTGTGCACGCGCGCGTGTGTGTG  580
                                      
seq2  --------------------------------  131

seq1: chr18_29052975_29054062
seq2: B6Ng01-248F06.g_66_1151 (reverse)

seq1  GCAATTGGATGC-ACATTCTGCCCTGGTAATTTTCTCT-ATAGATCTTCC  48
      ||||||| |||| |||||||||| |||||||||||||| ||||||||| |
seq2  GCAATTGAATGCAACATTCTGCCTTGGTAATTTTCTCTCATAGATCTT-C  49

seq1  AGGAGGACCAGAC-AAATGGACCATTAAAAAGAGGCAGGGGCGGGGGA-G  96
      ||   |||||||| |||| ||||||||||||   |||||||||||||| |
seq2  AG--AGACCAGACAAAATTGACCATTAAAAAAGAGCAGGGGCGGGGGAGG  97

seq1  CTGCCTTGGGTTGATGGTACATTTGAGCTGAATCCAAACTTTATTGGTGT  146
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGCCTTGGGTTGATGGTACA-TTGAGCTGAATCCAAACTTTATTGGTGT  146

seq1  TTTTCAGCTCCTATTTGAAAACTTATAAACATTGCTCCTTGGCACTTTAG  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCTCCTA-TTGAAAACTTATAAACATTGCTCCTTGGCACTTTAG  195

seq1  GGTTTTGTTTTGTTTTTGGTAGTTTTATTTGGCTTGCTTTTTAACTTTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTGTTTTTGGTAGTTTTATTTGGCTTGCTTTTTAACTTTCA  245

seq1  CTGACAATGAGGGG-AAATATTAGCTTGTGGGTTTCTTCTTTTGAAATGG  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGACAATGAGGGGAAAATATTAGCTTGTGGGTTTCTTCTTTTGAAATGG  295

seq1  AAATGGAACCCATCAACAATTCAGGTTTCCTAAAACAGTAATGCAAAGTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAACCCATCAACAATTCAGGTTTCCTAAAACAGTAATGCAAAGTT  345

seq1  TTCATCCTGCTCTGTAAAAAAGAAAACACAACACTGGTGATCAAATGTGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGCTCTGTAAAAAAGAAAACACAACACTGGTGATCAAATGTGT  395

seq1  TTAATTTCAGCCTAGCTAGACTTGGCAGTGGGGACAGTGCATAGGAGTAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCAGCCTAGCTAGACTTGGCAGTGGGGACAGTGCATAGGAGTAT  445

seq1  TTGGAAGGAGGCTGCCTCAGCTGCTTTTCCTTAATTCTTAATTCAGATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGAGGCTGCCTCAGCTGCTTTTCCTTAATTCTTAATTCAGATAA  495

seq1  CTTAAGCATGAATATTAATTAACCTACATTTTACTCCAAGTTAGAGTGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCATGAATATTAATTAACCTACATTTTACTCCAAGTTAGAGTGCC  545

seq1  TCTGTGAACCTTGTACTATAGTGTATCAAGACACTTTAAACAAAATATAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAACCTTGTACTATAGTGTATCAAGACACTTTAAACAAAATATAA  595

seq1  ATCTGAGTTCTTTGCCTTATACAAGACTTTAGGTAGTTTATTATTATTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGTTCTTTGCCTTATACAAGACTTTAGGTAGTTTATTATTATTAT  645

seq1  TATGAATTGAACAATAAAAAACATTTCAAATAGATACAAATTTGAAAGAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTGAACAATAAAAAACATTTCAAATAGATACAAATTTGAAAGAA  695

seq1  AAAAATTAACTCCAGCTCAGAGCATGTATTATTTTGCTTGTTTCCAGAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAACTCCAGCTCAGAGCATGTATTATTTTGCTTGTTTCCAGAAA  745

seq1  AAGCATAAAGTCTGGAAGCAGAAGTAAAATCTGGTGTTAATTGCTTTGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAAGTCTGGAAGCAGAAGTAAAATCTGGTGTTAATTGCTTTGGC  795

seq1  TATTCACTGTGCTCTGGAGGCAAAATTATATAAATAAGTTGTGAATGCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTGTGCTCTGGAGGCAAAATTATATAAATAAGTTGTGAATGCAG  845

seq1  AGGAGACTTATAAACAGTCGCTGCCCAGCCCTGTCTGAACATAAGCGTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTTATAAACAGTCGCTGCCCAGCCCTGTCTGAACATAAGCGTTA  895

seq1  GAACACTGAGGTTCACATGGATTTGTGTTTTATTTCTGAGCTACCTTCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTGAGGTTCACATGGATTTGTGTTTTATTTCTGAGCTACCTTCTA  945

seq1  ATTAGTTATTTCTCCTTTATGCATTGATGAGATATCAATATAAGTATATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTATTTCTCCTTTATGCATTGATGAGATATCAATATAAGTATATT  995

seq1  TATGTGTATATATATATATATATATATATATATATATATATATATATATA  1045
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTG--TATATATATATATATATATATATATATATATATATATATATA  1043

seq1  TGCCTAAATGTGCATTTACATTTCTGAAGTTCCATTTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAATGTGCATTTACATTTCTGAAGTTCCATTTGAATTC  1086