BAC Information

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BAC

Clone NameB6Ng01-248G16
Chromosome18 (Build37)
Map Location 50,138,022 - 50,307,686
singlet/doubletdoublet
Overlap geneTnfaip8, Hsd17b4, LOC626721
Upstream geneDtwd2, Dmxl1
Downstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248G16.bB6Ng01-248G16.g
ACCGA056502GA056503
length1,0781,081
definitionB6Ng01-248G16.b B6Ng01-248G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,306,657 - 50,307,686)(50,138,022 - 50,139,086)
sequence
gaattctaagtcagtgctggtggaaatgcaaatgatgaataaattgtgaa
agaccatgcagtagtttcttacacagataaaataatcttgcaaactatcc
aataatcacatttcttagtattttctcagaaattagaaatttatgtccat
atgaaatttagatgtgaattactggtagctatcttctgagggttcctatt
cctaggataaaaaaaaaaaatgaccaaaataaatttgggtagaaaggggc
ttatttcatcctctagggaatgcagggcagagactcatggcagaaaccct
gaagcaggaacagatgcagaggccaaggaggcgtacttattcttcatggt
ttgttcaccctattttcgtgcaccatccagaacaacgtgcccagggatgt
accacatgacgtgcccaccaccatcaatccaatcagaaatgccctacaag
ccaatgtggtggagggcattttctcagctgagtttctctcttcccaaatg
actctagcctgtgccaaattaacataaaaactcacaagcacagtagcttt
attacaacaataaaataaaacaagcgaaatcaaacaaacaaacaaaacca
gaagcaaccaagatgccctcgtaggtaagttaataaacaaacagtggtgc
tcccacaccgtggactacatccaatcaatacacgagtttccccatccaga
aggaaaggggaaggagtaattgcagcactggtgagctctgcacgactctg
taagagtggacacacgagggtatgcatttgtaagaagcctgacagttgta
taggacaaagtgagtcctaatgcaactatacaccttggttaacaacaata
aatccatatcagttcatcagttataacagagagcacggatgttagaggag
cccaggaaaggaacatacatgagaactctctacgctctaaccaggtgttc
tacaaagcttcctataaaggcaaaattgctccaaaaaataaagtatgtaa
cattccatattttatgctatgcatttcaatattgtgcttaaattgatcta
gaataagtacctattaatataaatgtgt
gaattcattctgtagaccaggctggcctcgagctcagaaatccgcctgcc
tctgcctccagagtgctgggattaacggcatgtgccaccacgcccggctt
ctctgccgggctattaagagctacaatcatagactgttgagaggattaga
atggttgcgtgtacatttttaatttgttaatagtattcctgaccggcttt
acagagctagtctcaagagtggatgtttacggtatgagtgggttcctctt
actcacaagtggtctttgccagttaccatagccacccaggaatggctctt
taacagaaagaaactgcagaatcagcttcatccccgtgtttcctttggag
tttcctggttcctagggcaaaggcagtcagtcatgctagagtggtgtgag
tctgagtgtgtgcccaagaccacaggcttcccacggggaagccaatgcga
gactaaccgagagatgaattccacgatctctgacaatgaaagccaagaat
ccacaagtgcttggaatgtctttgagtaatcttaacacgaggagggagag
aggaagaaagatggaaaagaagcaggatccagagacttctgcagatcatc
agtcacgtacatgggttaagtgtcagtcatggtgcaaaagagagtggccc
tatttgaccataacaactacaaaggcaatttcatttatgcaaagaaactg
agagatctcacaagcagatcttggccgccagctaccaaagttttgtgctt
tcgctgcccggtgaccttccatacttgcctgccctgagtaacaccgtcct
gcgcggaccattgtgtactggggccctttggaggtgcagatctacccgct
ctgcttccagctccctgggcacactgcctggtctctgccgccagaccccg
ccttaataggtgggccttttgcttttcctcccgccagcagctcagcccct
cccccacttgatcttacagctggagttccttgcccggtccacgccccctt
tcccatcatgccacgccccttgacctcctctcttgcttcgttccagcaag
tcctggccccttcccctagtccaccttccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_50306657_50307686
seq2: B6Ng01-248G16.b_92_1124 (reverse)

seq1  ACACATTTATAATAATAGGTTACTTA-TCTAGATCATATAAAGCACAATA  49
      ||||||||||| ||||||| |||||| |||||||||  | ||||||||||
seq2  ACACATTTATATTAATAGG-TACTTATTCTAGATCAATTTAAGCACAATA  49

seq1  -TGAAATGCATAGCAT-AAATATGGAATGTAACATACTTTA-TTTTTGGA  96
       ||||||||||||||| ||||||||||||| |||||||||| ||||||||
seq2  TTGAAATGCATAGCATAAAATATGGAATGTTACATACTTTATTTTTTGGA  99

seq1  GCAATTTTG-CTTTATAGGAAGCTTTGTAGAACAACTGGTTAGAGCGTAG  145
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GCAATTTTGCCTTTATAGGAAGCTTTGTAGAACACCTGGTTAGAGCGTAG  149

seq1  AGAGTTCTCATGTATGTTCCTTTCCTGGGCTCCTCTAACATCCGTGCTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTCATGTATGTTCCTTTCCTGGGCTCCTCTAACATCCGTGCTCT  199

seq1  CTTGTTATAACTGATGAACTGATATGGATTTATTGTTGTTAACCAAGGTG  245
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGTTATAACTGATGAACTGATATGGATTTATTGTTGTTAACCAAGGTG  248

seq1  TATAGTTGCATTAGGACTCACTTTGTCCTATACAACTGTCAGGCTTCTTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGCATTAGGACTCACTTTGTCCTATACAACTGTCAGGCTTCTTA  298

seq1  CAAATGCATACCCTCGTGTGTCCACTCTTACAGAGTCGTGCAGAGCTCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCATACCCTCGTGTGTCCACTCTTACAGAGTCGTGCAGAGCTCAC  348

seq1  CAGTGCTGCAATTACTCCTTCCCCTTTCCTTCTGGATGGGGAAACTCGTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCAATTACTCCTTCCCCTTTCCTTCTGGATGGGGAAACTCGTG  398

seq1  TATTGATTGGATGTAGTCCACGGTGTGGGAGCACCACTGTTTGTTTATTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTGGATGTAGTCCACGGTGTGGGAGCACCACTGTTTGTTTATTA  448

seq1  ACTTACCTACGAGGGCATCTTGGTTGCTTCTGGTTTTGTTTGTTTGTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTACGAGGGCATCTTGGTTGCTTCTGGTTTTGTTTGTTTGTTTG  498

seq1  ATTTCGCTTGTTTTATTTTATTGTTGTAATAAAGCTACTGTGCTTGTGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGCTTGTTTTATTTTATTGTTGTAATAAAGCTACTGTGCTTGTGAG  548

seq1  TTTTTATGTTAATTTGGCACAGGCTAGAGTCATTTGGGAAGAGAGAAACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTAATTTGGCACAGGCTAGAGTCATTTGGGAAGAGAGAAACT  598

seq1  CAGCTGAGAAAATGCCCTCCACCACATTGGCTTGTAGGGCATTTCTGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGAAAATGCCCTCCACCACATTGGCTTGTAGGGCATTTCTGATT  648

seq1  GGATTGATGGTGGTGGGCACGTCATGTGGTACATCCCTGGGCACGTTGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGATGGTGGTGGGCACGTCATGTGGTACATCCCTGGGCACGTTGTT  698

seq1  CTGGATGGTGCACGAAAATAGGGTGAACAAACCATGAAGAATAAGTACGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGTGCACGAAAATAGGGTGAACAAACCATGAAGAATAAGTACGC  748

seq1  CTCCTTGGCCTCTGCATCTGTTCCTGCTTCAGGGTTTCTGCCATGAGTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGGCCTCTGCATCTGTTCCTGCTTCAGGGTTTCTGCCATGAGTCT  798

seq1  CTGCCCTGCATTCCCTAGAGGATGAAATAAGCCCCTTTCTACCCAAATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGCATTCCCTAGAGGATGAAATAAGCCCCTTTCTACCCAAATTT  848

seq1  ATTTTGGTCATTTTTTTTTTTTATCCTAGGAATAGGAACCCTCAGAAGAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCATTTTTTTTTTTTATCCTAGGAATAGGAACCCTCAGAAGAT  898

seq1  AGCTACCAGTAATTCACATCTAAATTTCATATGGACATAAATTTCTAATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAGTAATTCACATCTAAATTTCATATGGACATAAATTTCTAATT  948

seq1  TCTGAGAAAATACTAAGAAATGTGATTATTGGATAGTTTGCAAGATTATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAATACTAAGAAATGTGATTATTGGATAGTTTGCAAGATTATT  998

seq1  TTATCTGTGTAAGAAACTACTGCATGGTCTTTCAC  1030
      |||||||||||||||||||||||||||||||||||
seq2  TTATCTGTGTAAGAAACTACTGCATGGTCTTTCAC  1033

seq1: chr18_50138022_50139086
seq2: B6Ng01-248G16.g_68_1148

seq1  GAATTCATTCTGTAGACCAGGCTGGCCTCGAGCTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGACCAGGCTGGCCTCGAGCTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCAGAGTGCTGGGATTAACGGCATGTGCCACCACGCCCGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCAGAGTGCTGGGATTAACGGCATGTGCCACCACGCCCGGCTT  100

seq1  CTCTGCCGGGCTATTAAGAGCTACAATCATAGACTGTTGAGAGGATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCGGGCTATTAAGAGCTACAATCATAGACTGTTGAGAGGATTAGA  150

seq1  ATGGTTGCGTGTACATTTTTAATTTGTTAATAGTATTCCTGACCGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGCGTGTACATTTTTAATTTGTTAATAGTATTCCTGACCGGCTTT  200

seq1  ACAGAGCTAGTCTCAAGAGTGGATGTTTACGGTATGAGTGGGTTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTAGTCTCAAGAGTGGATGTTTACGGTATGAGTGGGTTCCTCTT  250

seq1  ACTCACAAGTGGTCTTTGCCAGTTACCATAGCCACCCAGGAATGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACAAGTGGTCTTTGCCAGTTACCATAGCCACCCAGGAATGGCTCTT  300

seq1  TAACAGAAAGAAACTGCAGAATCAGCTTCATCCCCGTGTTTCCTTTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAGAAACTGCAGAATCAGCTTCATCCCCGTGTTTCCTTTGGAG  350

seq1  TTTCCTGGTTCCTAGGGCAAAGGCAGTCAGTCATGCTAGAGTGGTGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGTTCCTAGGGCAAAGGCAGTCAGTCATGCTAGAGTGGTGTGAG  400

seq1  TCTGAGTGTGTGCCCAAGACCACAGGCTTCCCACGGGGAAGCCAATGCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGTGTGCCCAAGACCACAGGCTTCCCACGGGGAAGCCAATGCGA  450

seq1  GACTAACCGAGAGATGAATTCCACGATCTCTGACAATGAAAGCCAAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACCGAGAGATGAATTCCACGATCTCTGACAATGAAAGCCAAGAAT  500

seq1  CCACAAGTGCTTGGAATGTCTTTGAGTAATCTTAACACGAGGAGGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTGCTTGGAATGTCTTTGAGTAATCTTAACACGAGGAGGGAGAG  550

seq1  AGGAAGAAAGATGGAAAAGAAGCAGGATCCAGAGACTTCTGCAGATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAAGATGGAAAAGAAGCAGGATCCAGAGACTTCTGCAGATCATC  600

seq1  AGTCACGTACATGGGTTAAGTGTCAGTCATGGTGCAAAAGAGAGTGGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGTACATGGGTTAAGTGTCAGTCATGGTGCAAAAGAGAGTGGCCC  650

seq1  TATTTGACCATAACAACTACAAAGGCAATTTCATTTATGCAAAGAAACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGACCATAACAACTACAAAGGCAATTTCATTTATGCAAAGAAACTG  700

seq1  AGAGATCTCACAAGCAGATCTTGGCCGCCAGCTACCAAAG-TTTGTGC-T  748
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  AGAGATCTCACAAGCAGATCTTGGCCGCCAGCTACCAAAGTTTTGTGCTT  750

seq1  TCGCTGCCCGGTGACCTTCCATAC-TGCCTGCCCTGAGTAACACCGTCCT  797
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCGCTGCCCGGTGACCTTCCATACTTGCCTGCCCTGAGTAACACCGTCCT  800

seq1  GCGCGGACCATTGTGTACTGGGGCCC-TTGGAGGTGCAGATCTACCCGCT  846
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCGCGGACCATTGTGTACTGGGGCCCTTTGGAGGTGCAGATCTACCCGCT  850

seq1  CTGCTTCCAGCTCCCTGGCCACACTGCCTGGTCTCTGCCGCCAGACCCCG  896
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGCTTCCAGCTCCCTGGGCACACTGCCTGGTCTCTGCCGCCAGACCCCG  900

seq1  CCCTAATAGGTGG--CCTTTGCTTTTCCTCCCGCCCAGCAGCTCAGCCCC  944
      || ||||||||||  | |||||||||||||||| ||||||||||||||||
seq2  CCTTAATAGGTGGGCCTTTTGCTTTTCCTCCCG-CCAGCAGCTCAGCCCC  949

seq1  T-CCCCAC-TGATCCTACAGCT-GAGTTCC-TGCCCCGGCCACGCCCCC-  989
      | |||||| ||||| ||||||| ||||||| ||||| | |||||||||| 
seq2  TCCCCCACTTGATCTTACAGCTGGAGTTCCTTGCCCGGTCCACGCCCCCT  999

seq1  TTCCCATCATGCCACGCCCC-TGACCTCCTCTC-TGCTTCG-TCCAGC-A  1035
      |||||||||||||||||||| |||||||||||| ||||||| |||||| |
seq2  TTCCCATCATGCCACGCCCCTTGACCTCCTCTCTTGCTTCGTTCCAGCAA  1049

seq1  GT-CTGGCCCC-TCCCCTAGTCCACCTCCCAG  1065
      || |||||||| ||||||||||||||| ||||
seq2  GTCCTGGCCCCTTCCCCTAGTCCACCTTCCAG  1081