BAC Information

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BAC

Clone NameB6Ng01-248L12
Chromosome18 (Build37)
Map Location 35,425,784 - 35,426,846
singlet/doubletsinglet
Overlap geneSil1
Upstream geneApc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2
Downstream geneLOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248L12.bB6Ng01-248L12.g
ACCGA056724GA056725
length7901,071
definitionB6Ng01-248L12.b B6Ng01-248L12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattttagtttgtcaggataccagcagtccagttctgtagtgtc
aggttaccaacagttttaaagaatcgctaaacacagatcagcagtggcag
cacagccaggcctctgctgaattgacgttgagtcagtcggagtgactagg
acccgctgaatatacagtaagtcaaacaaaacaacctgaaattcttacca
atatacaataattcaaacaaaacaacctgaaattttaatagtatataata
aaaacaagacaaccttaaattcctatcagtatataatgattcaaacaaag
caaccttaagttcctatcaatatacaataaaaacaaaacaaccttaaatt
tctatcaatgtataataaaaacaaaaccttaaattcctatcagtgtacaa
caatttaaatctaccatcctagatgataacaaccatagcatatcaaacac
acaaactgtccattccaatttaaggggtttggggtgacggtcttcttata
attgcttcatgctgaattggggtgaagaattcctgtttggagcccaaggg
gcaaaatgattaatccctagcacgtatgtagcagatgtggatctcaaaca
actaaagtgggggctatcccaaatgctgttgcctgtacatgggatatgtt
cttctagttgggctggctgccttgtctgtcctgagtgggagaggatgctc
ctagcctcacagagacttgaagtgccaatactcaggggtacccctatatg
cacagaggagaaggggataggggaaagggtttgtgggagg
gaattcttacgcacttactaggtcctgggagcagggactaggtccccatt
ttggtttctgcagcacccagcactgtgtgctggtgttttgaatgggcagg
cagatagacacagatggatgagggagcatgtaaaaagccagaaacctagc
tggttgcctcccaggaggtccctggtgtcccaaagtcatctagaaagtag
atgcgcttctcctaatgggaggagctagcccagagcaagctgactgctgt
ctgtcttctctccaccccaccctggctgtgaagatgtttgctgaggagga
ggcagagttgacccaggattcatccccagagaagctgcagcagtatcgcc
aggtgcagctcctgccaggcctgcaggaacagggttggtgtgagatcacc
gcccagctcctggcccttccagagcatgatgctcgggagaaggtgctgca
gacactgggtgccctcctgaccacctgccgggatcgctaccgtcaggacc
tccagttgagcaggacactagggcgtctccaagcagagtaccaagccctg
gcctccctggagctccaagaaggcgaagatgatggctacttccgggaact
gctggcctccatcaacagcttgatgaaggaactaagatgaggctgccatg
ccgagaccaggactggacggatgctgctagtgagagctttggtgggctct
tcaggggacatcaactacgaggaggacttaacctgctggggcatgagtgt
cacctgggcagagcttgctaggtcattaaacagagacatgatgacaatgg
tctgtctcttgtgtctgtcagggagggctgagccctgtgactgggcgcct
gagggtagttcagtgagccgctgtgatgggcctctagagacaagctgggc
aggaaaaggcctggtctaagagttggcaacctctggctatttcattggga
aagccaatttaacctctcagaataaaaaagaatgcgattagtaagaacat
gggacacagggaaaagcactgtgcacccagcgccccaccccttatccctt
gcttcaccttcagcctatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35425784_35426846
seq2: B6Ng01-248L12.g_66_1136 (reverse)

seq1  CTCATAGCCTG-AGGTG-AGCAGGGGATTAGGGGT-GGGCGCTGGGTGCA  47
      ||||||| ||| ||||| |||| ||||| |||||| ||||||||||||||
seq2  CTCATAGGCTGAAGGTGAAGCAAGGGATAAGGGGTGGGGCGCTGGGTGCA  50

seq1  CAGTGCTTTT-CCTGTGTCCCATGTCTTTACTAATCGCATTCTTTTT--A  94
      |||||||||| ||||||||||||||  ||||||||||||||||||||   
seq2  CAGTGCTTTTCCCTGTGTCCCATGTTCTTACTAATCGCATTCTTTTTTAT  100

seq1  TCTGAGAGGTT-AATTGGCTTTCCAAATGAAATAGCCAGAGGTTGCCAAC  143
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TCTGAGAGGTTAAATTGGCTTTCCCAATGAAATAGCCAGAGGTTGCCAAC  150

seq1  TCTTAGACCAGGCC-TTTCCTGCCCAGCTTGTCTCTAGAGGCCCATCACA  192
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTAGACCAGGCCTTTTCCTGCCCAGCTTGTCTCTAGAGGCCCATCACA  200

seq1  GCGGCTCACTGAACTACCCTCAGGCGCCCAGTCACAGGGCTCAGCCCTCC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTCACTGAACTACCCTCAGGCGCCCAGTCACAGGGCTCAGCCCTCC  250

seq1  CTGACAGACACAAGAGACAGACCATTGTCATCATGTCTCTGTTTAATGAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGACACAAGAGACAGACCATTGTCATCATGTCTCTGTTTAATGAC  300

seq1  CTAGCAAGCTCTGCCCAGGTGACACTCATGCCCCAGCAGGTTAAGTCCTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGCTCTGCCCAGGTGACACTCATGCCCCAGCAGGTTAAGTCCTC  350

seq1  CTCGTAGTTGATGTCCCCTGAAGAGCCCACCAAAGCTCTCACTAGCAGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTAGTTGATGTCCCCTGAAGAGCCCACCAAAGCTCTCACTAGCAGCA  400

seq1  TCCGTCCAGTCCTGGTCTCGGCATGGCAGCCTCATCTTAGTTCCTTCATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCCAGTCCTGGTCTCGGCATGGCAGCCTCATCTTAGTTCCTTCATC  450

seq1  AAGCTGTTGATGGAGGCCAGCAGTTCCCGGAAGTAGCCATCATCTTCGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTGATGGAGGCCAGCAGTTCCCGGAAGTAGCCATCATCTTCGCC  500

seq1  TTCTTGGAGCTCCAGGGAGGCCAGGGCTTGGTACTCTGCTTGGAGACGCC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAGCTCCAGGGAGGCCAGGGCTTGGTACTCTGCTTGGAGACGCC  550

seq1  CTAGTGTCCTGCTCAACTGGAGGTCCTGACGGTAGCGATCCCGGCAGGTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCCTGCTCAACTGGAGGTCCTGACGGTAGCGATCCCGGCAGGTG  600

seq1  GTCAGGAGGGCACCCAGTGTCTGCAGCACCTTCTCCCGAGCATCATGCTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGGGCACCCAGTGTCTGCAGCACCTTCTCCCGAGCATCATGCTC  650

seq1  TGGAAGGGCCAGGAGCTGGGCGGTGATCTCACACCAACCCTGTTCCTGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCCAGGAGCTGGGCGGTGATCTCACACCAACCCTGTTCCTGCA  700

seq1  GGCCTGGCAGGAGCTGCACCTGGCGATACTGCTGCAGCTTCTCTGGGGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCAGGAGCTGCACCTGGCGATACTGCTGCAGCTTCTCTGGGGAT  750

seq1  GAATCCTGGGTCAACTCTGCCTCCTCCTCAGCAAACATCTTCACAGCCAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGGTCAACTCTGCCTCCTCCTCAGCAAACATCTTCACAGCCAG  800

seq1  GGTGGGGTGGAGAGAAGACAGACAGCAGTCAGCTTGCTCTGGGCTAGCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGAGAGAAGACAGACAGCAGTCAGCTTGCTCTGGGCTAGCTC  850

seq1  CTCCCATTAGGAGAAGCGCATCTACTTTCTAGATGACTTTGGGACACCAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTAGGAGAAGCGCATCTACTTTCTAGATGACTTTGGGACACCAG  900

seq1  GGACCTCCTGGGAGGCAACCAGCTAGGTTTCTGGCTTTTTACATGCTCCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCCTGGGAGGCAACCAGCTAGGTTTCTGGCTTTTTACATGCTCCC  950

seq1  TCATCCATCTGTGTCTATCTGCCTGCCCATTCAAAACACCAGCACACAGT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTGTGTCTATCTGCCTGCCCATTCAAAACACCAGCACACAGT  1000

seq1  GCTGGGTGCTGCAGAAACCAAAATGGGGACCTAGTCCCTGCTCCCAGGAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGCTGCAGAAACCAAAATGGGGACCTAGTCCCTGCTCCCAGGAC  1050

seq1  CTAGTAAGTGCGTAAGAATTC  1063
      |||||||||||||||||||||
seq2  CTAGTAAGTGCGTAAGAATTC  1071