BAC Information

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BAC

Clone NameB6Ng01-248P02
Chromosome18 (Build37)
Map Location 45,477,611 - 45,478,721
singlet/doubletsinglet
Overlap genenone
Upstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
Downstream geneKcnn2, Trim36, LOC100042905, Pggt1b, Ccdc112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248P02.bB6Ng01-248P02.g
ACCGA056889GA056890
length1,1111,137
definitionB6Ng01-248P02.b B6Ng01-248P02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaactgaggaatcatgaatggctgagaagcacctaagcaatgt
tcaaagttcttagtgatcagagaaatgcaaatcaaaacgaccctgagagt
ccacctaattccaatcagaattactaagattttttttttcttttcaaaac
agttatgttcttgtttatgaatgaccagtggatggacttgaaactttgca
ctcgtttttaagtatgggtgaatctacagtcgtttatgtgtaggcgtcca
gtgtgctgtttgagctctactcctaaaacgcacatcctagggtcattctg
gcaattgcatttcagtgtactcatattggaatctcccagcccagtggatg
ctccaggagttgttcagtttaaagtctaggctttctgtatttcacaattg
ttctttagtaagtcctgtgttgtcacatttgcacatatgtgatagtagaa
tagaacctcggggggacgcctatgtagatgtgtggaacacttttcttcaa
attccatatttccagtttcagaagtgggtgcttatgagattcgagtgttt
gcttgtcttagacaagttatttattctcttcttctatttccccttttgaa
attgtgtcagaatttttttcccaggcaggaagccaaggcaataatattcc
tgtgtttttaaaaatttttcatttatcagaaaatatactgtagattaaac
cacaatcctgtaggagagcaatcatctcagatcttctagaattttctgaa
ctccttattatgcaatataagtgcaacttagtgacatgaatatgttactt
tgcttaaaatacttctctacacattcattcatttaaaggatggtttacac
ttttgtcttcataagtctggttgtgtctcaagaaaaaaaaaagttcagat
aaaatctccaagcaagttcaacagtgatcaaatattgtaaagacaaggtt
aaaaaatatgatattttgattctttaaaggtagctctatggtaatactta
tattgagaagaagaaaaaaaaaaaccaaggtaatatatccatgaaccgcc
tcagccatgtttataactaggagaaagaccttattttctctgtagagaat
tagatatgagt
gaattcaaggtcatctaggattaagggtgtggtggcacacacagctttaa
tctaggccacaccttctgctagaggcctacataaggacattggaagaagg
aagatttattctctctctttgcctgcttgccttgtgggactgagcaactg
ctagatccttggacttccattcacagctgctgttgactattgttgggagt
tggactacagactgtaagtcatcaacaaattccattactatatagagact
acctatacgttctgtgactctacagaactctgagtaatacagtggcctag
agactgtacttaaaatactttggctaagactgtggctgtttttttgtcct
ctggaaaagtctgctgagtttaaagttatgagtttggattaattgcattg
acaaaggaaatcttgaaaccacctagttcagactctgtcatgtggttatt
agtgttcactctaatgaagatttataaatgaaaaggaacaagctgagcaa
gtaaaactacaaagcatacagatgagaagaaaaggggcaccagaaagtgg
aatgaagatatagcctatattcaaggagataaacaaactaaagaagagcc
ctatgttaaatggaataaagggaatggtgacttcagagaaagaccctacc
tggataagttttcaaggagttaatgaaaagcttagaaccaggtatggtgg
tgattctttaagcccagcactcagaaggcataggttcgggtatttaaatt
caaaggcagcctgttctacagaacagtcaagcttaggcaatgaaggaaaa
cattggaaacagaaaaccaatgaagatgtacttgaatgagggtcactgtt
ccagtttcagcaagcagaagaacttggcatctttgatcatgtgattctgg
ctttagagtcaaggatagaagaatggagttatggaatctccctttgtgac
taacaaaagtcactgaagcctgtgttggggggtatcttctgcatgagcta
gaagcagtgattggagctcttaggtgagccgatcaacattagaaactgga
aaattgttgagatgaccgacctggcatactcctagaggtgaactgatgac
tagctaagcaagaccattgtctgcagttccaccgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45477611_45478721
seq2: B6Ng01-248P02.b_47_1157

seq1  GAATTCACAACTGAGGAATCATGAATGGCTGAGAAGCACCTAAGCAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAACTGAGGAATCATGAATGGCTGAGAAGCACCTAAGCAATGT  50

seq1  TCAAAGTTCTTAGTGATCAGAGAAATGCAAATCAAAACGACCCTGAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTCTTAGTGATCAGAGAAATGCAAATCAAAACGACCCTGAGAGT  100

seq1  CCACCTAATTCCAATCAGAATTACTAAGATTTTTTTTTTCTTTTCAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAATTCCAATCAGAATTACTAAGATTTTTTTTTTCTTTTCAAAAC  150

seq1  AGTTATGTTCTTGTTTATGAATGACCAGTGGATGGACTTGAAACTTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTTCTTGTTTATGAATGACCAGTGGATGGACTTGAAACTTTGCA  200

seq1  CTCGTTTTTAAGTATGGGTGAATCTACAGTCGTTTATGTGTAGGCGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTTTAAGTATGGGTGAATCTACAGTCGTTTATGTGTAGGCGTCCA  250

seq1  GTGTGCTGTTTGAGCTCTACTCCTAAAACGCACATCCTAGGGTCATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTGTTTGAGCTCTACTCCTAAAACGCACATCCTAGGGTCATTCTG  300

seq1  GCAATTGCATTTCAGTGTACTCATATTGGAATCTCCCAGCCCAGTGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCATTTCAGTGTACTCATATTGGAATCTCCCAGCCCAGTGGATG  350

seq1  CTCCAGGAGTTGTTCAGTTTAAAGTCTAGGCTTTCTGTATTTCACAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGAGTTGTTCAGTTTAAAGTCTAGGCTTTCTGTATTTCACAATTG  400

seq1  TTCTTTAGTAAGTCCTGTGTTGTCACATTTGCACATATGTGATAGTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGTAAGTCCTGTGTTGTCACATTTGCACATATGTGATAGTAGAA  450

seq1  TAGAACCTCGGGGGGACGCCTATGTAGATGTGTGGAACACTTTTCTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTCGGGGGGACGCCTATGTAGATGTGTGGAACACTTTTCTTCAA  500

seq1  ATTCCATATTTCCAGTTTCAGAAGTGGGTGCTTATGAGATTCGAGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATATTTCCAGTTTCAGAAGTGGGTGCTTATGAGATTCGAGTGTTT  550

seq1  GCTTGTCTTAGACAAGTTATTTATTCTCTTCTTCTATTTCCCCTTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTAGACAAGTTATTTATTCTCTTCTTCTATTTCCCCTTTTGAA  600

seq1  ATTGTGTCAGAATTTTTTTCCCAGGCAGGAAGCCAAGGCAATAATATTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCAGAATTTTTTTCCCAGGCAGGAAGCCAAGGCAATAATATTCC  650

seq1  TGTGTTTTTAAAAATTTTTCATTTATCAGAAAATATACTGTAGATTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTAAAAATTTTTCATTTATCAGAAAATATACTGTAGATTAAAC  700

seq1  CACAATCCTGTAGGAGAGCAATCATCTCAGATCTTCTAGAATTTTCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCTGTAGGAGAGCAATCATCTCAGATCTTCTAGAATTTTCTGAA  750

seq1  CTCCTTATTATGCAATATAAGTGCAACTTAGTGACATGAATATGTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATTATGCAATATAAGTGCAACTTAGTGACATGAATATGTTACTT  800

seq1  TGCTTAAAATACTTCTCTACACATTCATTCATTTAAAGGATGGTTTACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAATACTTCTCTACACATTCATTCATTTAAAGGATGGTTTACAC  850

seq1  TTTTGTCTTCATAAGTCTGGTTGTGTCTCAAGAAAAAAAAAAGTTCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTCATAAGTCTGGTTGTGTCTCAAGAAAAAAAAAAGTTCAGAT  900

seq1  AAAATCTCCAAGCAAAGTTCAACAGTGATCAAATATTGTAAAGACAAGGT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCCAAGC-AAGTTCAACAGTGATCAAATATTGTAAAGACAAGGT  949

seq1  TAAAAAAATATGATATTTTGATTCTTTAAAGGTAGCTCCTATGGT-ATAC  999
      | ||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  T-AAAAAATATGATATTTTGATTCTTTAAAGGTAGCT-CTATGGTAATAC  997

seq1  TTAATATGAGAAGAAG-AAAAAAAAAACCAAGGTAAAATATCCATGAAAC  1048
      |||   |||||||||| ||||||||||||||||||| ||||||||||| |
seq2  TTATATTGAGAAGAAGAAAAAAAAAAACCAAGGTAATATATCCATGAACC  1047

seq1  GCCTCAG-CATGTTTATAACCTAGGAG-AAGACCTTATTTTCCTCTGTAG  1096
      ||||||| ||||||||||| ||||||| ||||||||||||| ||||||||
seq2  GCCTCAGCCATGTTTATAA-CTAGGAGAAAGACCTTATTTT-CTCTGTAG  1095

seq1  AGAA-TAGATATGAGT  1111
      |||| |||||||||||
seq2  AGAATTAGATATGAGT  1111