BAC Information

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BAC

Clone NameB6Ng01-249A20
Chromosome18 (Build37)
Map Location 45,155,998 - 45,156,959
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
Downstream geneLOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249A20.bB6Ng01-249A20.g
ACCGA056973GA056974
length1,199970
definitionB6Ng01-249A20.b B6Ng01-249A20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccataccaagcatcatacagcctccacttcttctcagatccagag
agggcaacaaaaaccaacgaataaaatatgcaccaaaaaaaaaaaaaaga
aagaaagaaaaaggaaaggctagatatcagctcctagaattacaatcatc
ccaaacccagacagatactagtgtaaaagcacaatcaataatagccagga
aaatgtgtccccactagaactcagcaacctatcacaatagattctgagaa
ttgtaacatatctgaataagagacaaagaccttaaaatagcctttatgaa
tatgatagagacccttcaaaaggaaactaataggtttcttaaagaaatct
atgaaaacacaaacaaacagtggaagaaaatgaatgaaacagttagatac
ataaaagtagaaattgaattagtgaaccaaaactgatggaaatctagaaa
agaaagtttaggaacatgagcagaaaccacagtggcaagcctctccaaca
aaatagaagagatggaatggagaagagttggcatagaagacaccatagga
aaaacagatacctcagtcaaagaaaatgctaaatacataacaaaacatcc
tgcataagtcatccagaaaatctggaatacgatgaaaagaccaaatctaa
ggataataggaatagagaaagaagaaacccaggtcaaaggcaccaagcat
aattacaataaaattacaggagaaaaatttcttagcatgagggaacacat
ggctgcctatcaagatataagaatcatatagactggaccagagaagaaag
tctcttcggcacataataatcaaaacactaagcatacagaacaaagggta
aaaaacaaatagcttataaaggcagacctactagaataacaccttacttt
tcactggagactttaagccagaagcatctggatggatgatccaagaggcc
acaaccaagatttcacttacaatagctgagaaaaattctacaataaaaac
caaatgtaatcatatctatctgcaactcagctctacagaagtattagaaa
gaaatttcaactgacatatcaagacacccagaaacatgagaatatctcag
agtagcatatcaagagtggagaaccatacacacataacacggattcactc
tttatatgatcctccaatccaattgattatgttccctataaaagggtac
gaattctaaccattacacagaattacaaagcattaggtagatattaactt
ctgagttcaggcttttgataaacctacacatagaaggtacttctgaacag
ctgatggggacttacctagatttattgtaatctttgggtgtatatgtgtg
tttatttgcatgtgtatgagtgcatacatgttcactcacatgcatgcact
tctagaaaagaacttagtttttatttatgtatttatttatttagagataa
tgttttgtgtgtgtttcaggctgtctttgactcataggctcacctgtcat
ctaatctcagctttctaaatagctgggactataggtgtatgagccaccat
ggccagatcataaccatccttatgttaactgaatgaccctttgctatgag
gaactcttctcttaggtttctaggcgtcagtatatagtctgtttgctata
catttgttagtaagaggcccagatcagagtcaagccctcttactggagag
gtcatgtatgttttgcctgagaatgtctagtgctctagggaaatgataat
ttgaaccgaagtataattaaagaagaaacaggactaaaatggtcattatt
tgaaagtcagggtagagatggaagagagagaatgaagactaatggcagaa
tgcaattgtgaagcagagtttctggctttgcttgaataatacataaagct
gtaattaagatttaagacgatgctcatgggagatgttcttttgagccaga
attcaatatttcttgtggtcattaaagacaagatgatcaatcttcttttt
cactctctgttggaagcagaggagtgggccactgaaaccacagagaaatt
gctgaaggcatttagatgaagaaaggaggtttgctagggagtgggtggga
gctgggaagaatagacctagagtatcccattagctgaactttaagggcaa
acccaatagagctatgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45155998_45156959
seq2: B6Ng01-249A20.g_67_1036

seq1  GAATTCTAACCATTACACAGAATTACAAAGCATTAGGTAGATATTAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCATTACACAGAATTACAAAGCATTAGGTAGATATTAACTT  50

seq1  CTGAGTTCAGGCTTTTGATAAACCTACACATAGAAGGTACTTCTGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAGGCTTTTGATAAACCTACACATAGAAGGTACTTCTGAACAG  100

seq1  CTGATGGGGACTTACCTAGATTTATTGTAATCTTTGGGTGTATATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGGACTTACCTAGATTTATTGTAATCTTTGGGTGTATATGTGTG  150

seq1  TTTATTTGCATGTGTATGAGTGCATACATGTTCACTCACATGCATGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGCATGTGTATGAGTGCATACATGTTCACTCACATGCATGCACT  200

seq1  TCTAGAAAAGAACTTAGTTTTTATTTATGTATTTATTTATTTAGAGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGAACTTAGTTTTTATTTATGTATTTATTTATTTAGAGATAA  250

seq1  TGTTTTGTGTGTGTTTCAGGCTGTCTTTGACTCATAGGCTCACCTGTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTGTGTTTCAGGCTGTCTTTGACTCATAGGCTCACCTGTCAT  300

seq1  CTAATCTCAGCTTTCTAAATAGCTGGGACTATAGGTGTATGAGCCACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCAGCTTTCTAAATAGCTGGGACTATAGGTGTATGAGCCACCAT  350

seq1  GGCCAGATCATAACCATCCTTATGTTAACTGAATGACCCTTTGCTATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATCATAACCATCCTTATGTTAACTGAATGACCCTTTGCTATGAG  400

seq1  GAACTCTTCTCTTAGGTTTCTAGGCGTCAGTATATAGTCTGTTTGCTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTTCTCTTAGGTTTCTAGGCGTCAGTATATAGTCTGTTTGCTATA  450

seq1  CATTTGTTAGTAAGAGGCCCAGATCAGAGTCAAGCCCTCTTACTGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTAGTAAGAGGCCCAGATCAGAGTCAAGCCCTCTTACTGGAGAG  500

seq1  GTCATGTATGTTTTGCCTGAGAATGTCTAGTGCTCTAGGGAAATGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTATGTTTTGCCTGAGAATGTCTAGTGCTCTAGGGAAATGATAAT  550

seq1  TTGAACCGAAGTATAATTAAAGAAGAAACAGGACTAAAATGGTCATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCGAAGTATAATTAAAGAAGAAACAGGACTAAAATGGTCATTATT  600

seq1  TGAAAGTCAGGGTAGAGATGGAAGAGAGAGAATGAAGACTAATGGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTCAGGGTAGAGATGGAAGAGAGAGAATGAAGACTAATGGCAGAA  650

seq1  TGCAATTGTGAAGCAGAGTTTCTGGCTTTGCTTGAATAATACATAAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGTGAAGCAGAGTTTCTGGCTTTGCTTGAATAATACATAAAGCT  700

seq1  GTAATTAAGATTTAAGACGATGCTCATGGGAGATGTTCTTTTGAGCCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAGATTTAAGACGATGCTCATGGGAGATGTTCTTTTGAGCCAGA  750

seq1  ATTCAATATTTCTTGTGGTCATTAAAGACAAGATGATCAATCTTCTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATATTTCTTGTGGTCATTAAAGACAAGATGATCAATCTTCTTTTT  800

seq1  CACTCTCTGTTGGAAGCAGAGGAGT-GGCCACTGAAACCACAGAGAAATT  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTCTCTGTTGGAAGCAGAGGAGTGGGCCACTGAAACCACAGAGAAATT  850

seq1  GCTG-AGGCATTTAGATGAAGAAAGGAGG-TTGCTA-GGAGTGGGT-GGA  895
      |||| |||||||||||||||||||||||| |||||| ||||||||| |||
seq2  GCTGAAGGCATTTAGATGAAGAAAGGAGGTTTGCTAGGGAGTGGGTGGGA  900

seq1  GCT-GGAGGAATAGA-CTAGAGAATCCCATTAGCTGAACTCTAA-GGCAA  942
      ||| ||| ||||||| |||||| ||||||||||||||||| ||| |||||
seq2  GCTGGGAAGAATAGACCTAGAGTATCCCATTAGCTGAACTTTAAGGGCAA  950

seq1  ACCCAAAAGAGCTATGAGCT  962
      |||||| |||||||||||||
seq2  ACCCAATAGAGCTATGAGCT  970