BAC Information

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BAC

Clone NameB6Ng01-249D18
Chromosome18 (Build37)
Map Location 3,388,481 - 3,513,188
singlet/doubletdoublet
Overlap geneCul2, EG621501, Bambi
Upstream geneLOC664794, Crem, EG621440
Downstream geneLOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249D18.bB6Ng01-249D18.g
ACCGA057108GA057109
length1,2091,115
definitionB6Ng01-249D18.b B6Ng01-249D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,511,985 - 3,513,188)(3,388,481 - 3,389,619)
sequence
gaattcctagagcttggggagtagcttagtggtagagactgtgcacttag
catgcacaacttttagcacaaacaagcaaagttcttacatgaaaactaaa
accagaaccattctggaaaacaactgtaagtgagacactcgacaatggtc
attacacaaagataattaattatacgtttgtgtaagaatgaacaagatca
aaacctacatttgagaagtatgagtaaacggattttcattcatataatta
acatgtactctcatacacttccaaatcaaatgttttttgactgattggct
ttctgtggtgctggagaaatcacagccagggcctcacgcacaccagacaa
gcaagcatcttaccactgcactgcaccaccaccagcctccccacacccgt
ctgaagttttaattcatgaaagacaccactaaattttcggacaaaaatat
atatattttaaaaaatctttacaataaatgaggatgtaggagcttacaga
gagcacagtgtttttacttcagtcagctgcagctccctaggacacaaaga
accctgggaaagtgtgcagagtcctctctttgctttttataactttaaag
caaattaatccatttgactgtagaatctgtgcaaataatccttcagaaga
aatacccaagattctcttttcagaggtcattttgtttctccaagatgact
aagcgagttagttgtctccagataaaagtgctcctgtcagcagaactcag
aaggccttcaagggttccatttatagttcagacatgactgtcatatgaat
tccagctttccatgaccactgtacatgccccagtgcacaagggagaggat
cttctcattactgagctctgcttgccgcattttgtcacaggtcagacagc
agttctcctgcccactgacaggcaccatgcactccaagtccaactttgca
acttgccccttcttggaatggtgtccgtgaaagctgtagtgcagacggga
cagcatctgctgccgctcatcctgcagcctcttgttctcacttcgaagca
ttcgcaaggcccaacaatattgagcagcacaagatcagttccgctagcat
ggaacgctatcacagctggcgcggaaccatcagttctttgggaggaggtc
agcttctgcaatctagtgatgaggtttgctgccgtgtcatgctgtatacc
ggagtttcc

gaattcactataaagactcagagatctaattgcctcttcccatcaagtcc
ttagataagaggagagttccacagtgcctgcctaagattcttaaattttc
tttggtgttttgaaacttggcttcttctagcataacctgatctggaactt
actatgggatggacagtaaccttgaactctcctgcttccacttctgaagt
agggtttctgagtgctctggcacactttgtttctatgtgtgttttgctct
cttggaatgttgtttactactttgaattctctctgctgaagaatttagac
gggagacaagttttcttaaattgttttaaactttgtttcttttttaattt
gagacctggtcttgctgtgcagcccaggctaggctagaattcattgtgta
tccttgcctagcctcacactcttactcctcctgttcttagcctctgaagt
ggctgggttgcagctgtgtgcaaacagatacttacaaagttgttatgaac
tctcaggtagttgtcttagatatttctggaaaaaaattggtctttttttt
ttttttttgagactgctcattctttgtatcctctccctttccatgatggt
gtgtagttaagactggcctcaaaaatatttaataagtgccaccacatatg
attttatgagcagtggccaggcaggcactcttaccaactaagcttcgtct
cacgctcagggtggttctcgacctagaactgggccagtgaacttcttgtt
gttgctgctgttatctttgtctctttttggtttatacaggagattaaaga
gtcaatttccagtccagagcaacaacctttgagaaagtagtactttttga
agtattagacaccactgacaagacattaaatgtggttatcttattgctta
aaactctaaatgtgcaggtgttaatgccaatttgaaggttttcattaacc
aaagggattttctgtatagacttcatccattagtgtaaccatgtagtcat
taaatatagctcatacatgtcagaatttcataaaaataggttgacagcta
taattattccatctgccataggctagtacatctgcaacattcttggcagc
ctagacactaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_3511985_3513188
seq2: B6Ng01-249D18.b_50_1258 (reverse)

seq1  GGAAA--CCGGTAT-CAGCATGACAGCAGCAG-AAACCTCATCACTAAGA  46
      |||||  ||||||| |||||||||| | |||| ||||||||||||||   
seq2  GGAAACTCCGGTATACAGCATGACA-CGGCAGCAAACCTCATCACTAGAT  49

seq1  TGCAGGAGCTGACTTCCT-CCAAAGAACTG-TGGTTCCGCG-CAGCTGTG  93
      ||||| ||||||| |||| ||||||||||| |||||||||| ||||||||
seq2  TGCAGAAGCTGACCTCCTCCCAAAGAACTGATGGTTCCGCGCCAGCTGTG  99

seq1  ATAGCGGTTCCCATTGCTGGCGG-ACTGATCTTGGTGCTGCTCATTA-TG  141
      ||||| |||||   |||| |||| ||||||||| |||||||||| || ||
seq2  ATAGC-GTTCC--ATGCTAGCGGAACTGATCTT-GTGCTGCTCAATATTG  145

seq1  TT-GGCCTTGCGAATGCTTCGAAGTGAGAACAAGAGGCTGCAGGATGAGC  190
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTTGCGAATGCTTCGAAGTGAGAACAAGAGGCTGCAGGATGAGC  195

seq1  GGCAGCAGATGCTGTCCCGTCTGCACTACAGCTTTCACGGACACCATTCC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGATGCTGTCCCGTCTGCACTACAGCTTTCACGGACACCATTCC  245

seq1  AAGAAGGGGCAAGTTGCAAAGTTGGACTTGGAGTGCATGGTGCCTGTCAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGGCAAGTTGCAAAGTTGGACTTGGAGTGCATGGTGCCTGTCAG  295

seq1  TGGGCAGGAGAACTGCTGTCTGACCTGTGACAAAATGCGGCAAGCAGAGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGGAGAACTGCTGTCTGACCTGTGACAAAATGCGGCAAGCAGAGC  345

seq1  TCAGTAATGAGAAGATCCTCTCCCTTGTGCACTGGGGCATGTACAGTGGT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATGAGAAGATCCTCTCCCTTGTGCACTGGGGCATGTACAGTGGT  395

seq1  CATGGAAAGCTGGAATTCATATGACAGTCATGTCTGAACTATAAATGGAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGCTGGAATTCATATGACAGTCATGTCTGAACTATAAATGGAA  445

seq1  CCCTTGAAGGCCTTCTGAGTTCTGCTGACAGGAGCACTTTTATCTGGAGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAGGCCTTCTGAGTTCTGCTGACAGGAGCACTTTTATCTGGAGA  495

seq1  CAACTAACTCGCTTAGTCATCTTGGAGAAACAAAATGACCTCTGAAAAGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAACTCGCTTAGTCATCTTGGAGAAACAAAATGACCTCTGAAAAGA  545

seq1  GAATCTTGGGTATTTCTTCTGAAGGATTATTTGCACAGATTCTACAGTCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGGGTATTTCTTCTGAAGGATTATTTGCACAGATTCTACAGTCA  595

seq1  AATGGATTAATTTGCTTTAAAGTTATAAAAAGCAAAGAGAGGACTCTGCA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATTAATTTGCTTTAAAGTTATAAAAAGCAAAGAGAGGACTCTGCA  645

seq1  CACTTTCCCAGGGTTCTTTGTGTCCTAGGGAGCTGCAGCTGACTGAAGTA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCCAGGGTTCTTTGTGTCCTAGGGAGCTGCAGCTGACTGAAGTA  695

seq1  AAAACACTGTGCTCTCTGTAAGCTCCTACATCCTCATTTATTGTAAAGAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGTGCTCTCTGTAAGCTCCTACATCCTCATTTATTGTAAAGAT  745

seq1  TTTTTAAAATATATATATTTTTGTCCGAAAATTTAGTGGTGTCTTTCATG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAATATATATATTTTTGTCCGAAAATTTAGTGGTGTCTTTCATG  795

seq1  AATTAAAACTTCAGACGGGTGTGGGGAGGCTGGTGGTGGTGCAGTGCAGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACTTCAGACGGGTGTGGGGAGGCTGGTGGTGGTGCAGTGCAGT  845

seq1  GGTAAGATGCTTGCTTGTCTGGTGTGCGTGAGGCCCTGGCTGTGATTTCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATGCTTGCTTGTCTGGTGTGCGTGAGGCCCTGGCTGTGATTTCT  895

seq1  CCAGCACCACAGAAAGCCAATCAGTCAAAAAACATTTGATTTGGAAGTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCACAGAAAGCCAATCAGTCAAAAAACATTTGATTTGGAAGTGT  945

seq1  ATGAGAGTACATGTTAATTATATGAATGAAAATCCGTTTACTCATACTTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTACATGTTAATTATATGAATGAAAATCCGTTTACTCATACTTC  995

seq1  TCAAATGTAGGTTTTGATCTTGTTCATTCTTACACAAACGTATAATTAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTAGGTTTTGATCTTGTTCATTCTTACACAAACGTATAATTAAT  1045

seq1  TATCTTTGTGTAATGACCATTGTCGAGTGTCTCACTTACAGTTGTTTTCC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTGTAATGACCATTGTCGAGTGTCTCACTTACAGTTGTTTTCC  1095

seq1  AGAATGGTTCTGGTTTTAGTTTTCATGTAAGAACTTTGCTTGTTTGTGCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTTCTGGTTTTAGTTTTCATGTAAGAACTTTGCTTGTTTGTGCT  1145

seq1  AAAAGTTGTGCATGCTAAGTGCACAGTCTCTACCACTAAGCTACTCCCCA  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTGCATGCTAAGTGCACAGTCTCTACCACTAAGCTACTCCCCA  1195

seq1  AGCTCTAGGAATTC  1204
      ||||||||||||||
seq2  AGCTCTAGGAATTC  1209


seq1: chr18_3388481_3389619
seq2: B6Ng01-249D18.g_67_1181

seq1  GAATTCACTATAAAGACTCAGAGATCTAATTGCCTCTTCCCATCAAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATAAAGACTCAGAGATCTAATTGCCTCTTCCCATCAAGTCC  50

seq1  TTAGATAAGAGGAGAGTTCCACAGTGCCTGCCTAAGATTCTTAAATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATAAGAGGAGAGTTCCACAGTGCCTGCCTAAGATTCTTAAATTTTC  100

seq1  TTTGGTGTTTTGAAACTTGGCTTCTTCTAGCATAACCTGATCTGGAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTTGAAACTTGGCTTCTTCTAGCATAACCTGATCTGGAACTT  150

seq1  ACTATGGGATGGACAGTAACCTTGAACTCTCCTGCTTCCACTTCTGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGGATGGACAGTAACCTTGAACTCTCCTGCTTCCACTTCTGAAGT  200

seq1  AGGGTTTCTGAGTGCTCTGGCACACTTTGTTTCTATGTGTGTTTTGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTGAGTGCTCTGGCACACTTTGTTTCTATGTGTGTTTTGCTCT  250

seq1  CTTGGAATGTTGTTTACTACTTTGAATTCTCTCTGCTGAAGAATTTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATGTTGTTTACTACTTTGAATTCTCTCTGCTGAAGAATTTAGAC  300

seq1  GGGAGACAAGTTTTCTTAAATTGTTTTAAACTTTGTTTCTTTTTTAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACAAGTTTTCTTAAATTGTTTTAAACTTTGTTTCTTTTTTAATTT  350

seq1  GAGACCTGGTCTTGCTGTGCAGCCCAGGCTAGGCTAGAATTCATTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGGTCTTGCTGTGCAGCCCAGGCTAGGCTAGAATTCATTGTGTA  400

seq1  TCCTTGCCTAGCCTCACACTCTTACTCCTCCTGTTCTTAGCCTCTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCTAGCCTCACACTCTTACTCCTCCTGTTCTTAGCCTCTGAAGT  450

seq1  GGCTGGGTTGCAGCTGTGTGCAAACAGATACTTACAAAGTTGTTATGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGTTGCAGCTGTGTGCAAACAGATACTTACAAAGTTGTTATGAAC  500

seq1  TCTCAGGTAGTTGTCTTAGATATTTCTGGAAAAAAATTGGTCTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTAGTTGTCTTAGATATTTCTGGAAAAAAATTGGTCTTTTTTTT  550

seq1  TTTTTTTTGAGACTGCTCATTCTTTGTATCCTCTCCCTTTCCATGATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGAGACTGCTCATTCTTTGTATCCTCTCCCTTTCCATGATGGT  600

seq1  GTGTAGTTAAGACTGGCCTCAAAAATATTTAATAAGTGCCACCACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTAAGACTGGCCTCAAAAATATTTAATAAGTGCCACCACATATG  650

seq1  ATTTTATGAGCAGTGGCCAGGCAGGCACTCTTACCAACTAAGCTTCGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGAGCAGTGGCCAGGCAGGCACTCTTACCAACTAAGCTTCGTCT  700

seq1  CACGCTCAGGGTGGTTCTCGACCTAGAACTGGGCCAGTGAACTTCTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTCAGGGTGGTTCTCGACCTAGAACTGGGCCAGTGAACTTCTTGTT  750

seq1  GTTGCTGCTGTTATCTTTGTCTCTTTTTGGTTTATACAGGAGATTAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGCTGTTATCTTTGTCTCTTTTTGGTTTATACAGGAGATTAAAGA  800

seq1  GTCAATTTCCAGTCCAGAGCAACAACCTTTGAGAAAGTAGTACTTTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTCCAGTCCAGAGCAACAACCTTTGAGAAAGTAGTACTTTTTGA  850

seq1  AGTATTAGACACCACTGACAAGACATTAAATGT-GTTATCTTA-TGCTTA  898
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  AGTATTAGACACCACTGACAAGACATTAAATGTGGTTATCTTATTGCTTA  900

seq1  AAACTCTAAAATGTGCAGGTGTTAATGCCAATTTGAAGGTTTCAATTAAC  948
      ||||||| ||||||||||||||||||||||||||||||||||  ||||||
seq2  AAACTCT-AAATGTGCAGGTGTTAATGCCAATTTGAAGGTTTTCATTAAC  949

seq1  CAAA-GGATTTTCTGTTATAGACTTCATCATTTAGTGTTAACCATTGTTA  997
      |||| |||||||||| |||||||||||||  |||||| |||||||   ||
seq2  CAAAGGGATTTTCTG-TATAGACTTCATCCATTAGTG-TAACCAT--GTA  995

seq1  GTCATTAAATTATAGCCTCATTAACATGTCAGAATTTTTCATAAAAATAG  1047
      ||||||||| ||||| |||||  |||||||||||  ||||||||||||||
seq2  GTCATTAAA-TATAG-CTCAT--ACATGTCAGAA--TTTCATAAAAATAG  1039

seq1  GTTGACAGCTTATTATTTTTTATTTTTCTAATCTGCTATAAGCTTAGTTA  1097
      ||||||||| ||| ||| ||          |||||| ||| || ||| ||
seq2  GTTGACAGC-TATAATTATT--------CCATCTGCCATAGGC-TAG-TA  1078

seq1  CATCTGCAACATTCTTTGGCAGTCTAGAACACACTAAATATT  1139
      |||||||||||||| ||||||| ||||   ||||| ||||||
seq2  CATCTGCAACATTC-TTGGCAGCCTAG---ACACT-AATATT  1115


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