BAC Information

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BAC

Clone NameB6Ng01-249G06
Chromosome18 (Build37)
Map Location 62,152,678 - 62,274,425
singlet/doubletdoublet
Overlap geneSh3tc2
Upstream geneSlc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249G06.bB6Ng01-249G06.g
ACCGA057225GA057226
length1,0341,140
definitionB6Ng01-249G06.b B6Ng01-249G06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,273,886 - 62,274,425)(62,152,678 - 62,153,819)
sequence
gaattccctgtgtgatcccataaatcaagtccctggagcgatggttctca
atctgtgggtcccgacccctttaaaggtcgggggcacttttgcagaggat
gcctaagactatcagaaaaacacatatgtacgcgtcataaccatagtaaa
actaaagttataaagtagcaaggaaataattttatggttgaggggaatca
ctacaacatgaagaactgtattaaagggttagaattagaatggttgagaa
ccactgccctcgagtcaaggaatgaggtcacttcagataggaacagtgcc
atgacaaagtgcaattcagcccagagcattggacctaggatctaatcaga
actcatgtgattctgccaaagtaacatgacctggggattaatgttgattc
ctaaatgaagttaatcataatcttccccagatgacctagcaattctacta
ctaggcatttacccaagggaaatgaacacagttgtcaaaacaaagatttg
tacgtgagtgttcagagaactttattccagcagccgaaagctggagctag
cccggcagatgtctgtcagcaagaggacgagtaaacaaaatgtgctatat
gaagtggaatgcctctcagaaattgaaaggattgaacccctaataaagcc
aaattgtggggactctgaaaactaccccactaggcaaagcagccgacagc
cagtagccagcagccagaagagcttgcatagtagccatttccacagaata
ttctagaagcagccagaatttcacagcagagcccacatcagttgctgcct
ttagctgcagcggaagtgggattggcaattgaacacctagaggaatttcc
aatgggagcagacgttgctccatctcaaactaggatggggatctgtcatg
tgtatgcttgggtcaaaatccatcaaattgtacaataaaagttaattcac
tttgactggctcagtcagtaagacctggaacatgcgttcaggaggacctg
ctttggatccttaagcactcacgggataaaaagc
gaattcagaaaattcctacaggcttgcccacagcccaattttatagaggc
attttcttaagtgaggctccctcctctcagatgactgtgtcaagttgaca
taaaagtagccagcactggtaccatggtaactgtgaggatgcaggcatca
gacaatagttaattacatggtgaactctcgttctctatgtatttctcccc
gctcactctatttctttttgttcctgttctcttaccaaaaaaaaaaaaaa
aaaaaatcaggcatcttctgagcttcccattgcctttggtgccagggaga
gaattttgagacatacagcctgtgggaggcaatggaatgcctgcccagcc
tgtcctgcctccatttctgcacactctaggagtatggatgcctctggaca
ggctttaggaaagtcagatataaaggaccaggacaaggatgctgaattta
catctgacttatcgctgcctcccccatactgtgtatcctgtgtattttca
gttttagattactcctgtgcccagctaccatcctttgctctcagctctgg
cttagttgtcaaaaatattgatattttggcaacagcgggagggagagaca
gagacagggagagacagggagaggagaataggtgggcagaaggagagaga
gtatgaatcactgttcttagatgatgcaggtgatacagaagagacatgaa
gtggatactgcaagaagatagcagctacaaacctggacaagtggctggaa
ttaggagtctggaaaccaagtcctgctgtgacctgataacattgcccttt
acaagccacttgccttggttgctgtgttcatagagtcaatttgagtcagg
aatcttcttgatgagtctgagaccagctaactatatcaacctgacactgg
ctaacaggctaccagtgcctccaaagaggcttcagttgtttgaggcagat
cctttaaagctattgaggctttcagatagggcatggaagccagtgaccta
agggcttttgggggaggagggtctgaaacattccaaagtgtgtcagagtt
ctgcaggccaatgtatcaagttgcagaactatgctatctatgtgcctcac
tgggctgtctgatgatactgacttgtagcctgaagggatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_62273886_62274425
seq2: B6Ng01-249G06.b_42_581 (reverse)

seq1  CTTTCGGCTGCTGGAATAAAGTTCTCTGAACACTCACGTACAAATCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGGCTGCTGGAATAAAGTTCTCTGAACACTCACGTACAAATCTTTG  50

seq1  TTTTGACAACTGTGTTCATTTCCCTTGGGTAAATGCCTAGTAGTAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAACTGTGTTCATTTCCCTTGGGTAAATGCCTAGTAGTAGAATT  100

seq1  GCTAGGTCATCTGGGGAAGATTATGATTAACTTCATTTAGGAATCAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTCATCTGGGGAAGATTATGATTAACTTCATTTAGGAATCAACAT  150

seq1  TAATCCCCAGGTCATGTTACTTTGGCAGAATCACATGAGTTCTGATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCAGGTCATGTTACTTTGGCAGAATCACATGAGTTCTGATTAGA  200

seq1  TCCTAGGTCCAATGCTCTGGGCTGAATTGCACTTTGTCATGGCACTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTCCAATGCTCTGGGCTGAATTGCACTTTGTCATGGCACTGTTC  250

seq1  CTATCTGAAGTGACCTCATTCCTTGACTCGAGGGCAGTGGTTCTCAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGAAGTGACCTCATTCCTTGACTCGAGGGCAGTGGTTCTCAACCA  300

seq1  TTCTAATTCTAACCCTTTAATACAGTTCTTCATGTTGTAGTGATTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTCTAACCCTTTAATACAGTTCTTCATGTTGTAGTGATTCCCCT  350

seq1  CAACCATAAAATTATTTCCTTGCTACTTTATAACTTTAGTTTTACTATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAAAATTATTTCCTTGCTACTTTATAACTTTAGTTTTACTATGG  400

seq1  TTATGACGCGTACATATGTGTTTTTCTGATAGTCTTAGGCATCCTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACGCGTACATATGTGTTTTTCTGATAGTCTTAGGCATCCTCTGCA  450

seq1  AAAGTGCCCCCGACCTTTAAAGGGGTCGGGACCCACAGATTGAGAACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCCCCGACCTTTAAAGGGGTCGGGACCCACAGATTGAGAACCAT  500

seq1  CGCTCCAGGGACTTGATTTATGGGATCACACAGGGAATTC  540
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCAGGGACTTGATTTATGGGATCACACAGGGAATTC  540

seq1: chr18_62152678_62153819
seq2: B6Ng01-249G06.g_65_1204

seq1  GAATTCAGAAAATTCCTACAGGCTTGCCCACAGCCCAATTTTATAGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAATTCCTACAGGCTTGCCCACAGCCCAATTTTATAGAGGC  50

seq1  ATTTTCTTAAGTGAGGCTCCCTCCTCTCAGATGACTGTGTCAAGTTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTAAGTGAGGCTCCCTCCTCTCAGATGACTGTGTCAAGTTGACA  100

seq1  TAAAAGTAGCCAGCACTGGTACCATGGTAACTGTGAGGATGCAGGCATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTAGCCAGCACTGGTACCATGGTAACTGTGAGGATGCAGGCATCA  150

seq1  GACAATAGTTAATTACATGGTGAACTCTCGTTCTCTATGTATTTCTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATAGTTAATTACATGGTGAACTCTCGTTCTCTATGTATTTCTCCCC  200

seq1  GCTCACTCTATTTCTTTTTGTTCCTGTTCTCTTACCAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCTATTTCTTTTTGTTCCTGTTCTCTTACCAAAAAAAAAAAAAA  250

seq1  AAAAAATCAGGCATCTTCTGAGCTTCCCATTGCCTTTGGTGCCAGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGGCATCTTCTGAGCTTCCCATTGCCTTTGGTGCCAGGGAGA  300

seq1  GAATTTTGAGACATACAGCCTGTGGGAGGCAATGGAATGCCTGCCCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGAGACATACAGCCTGTGGGAGGCAATGGAATGCCTGCCCAGCC  350

seq1  TGTCCTGCCTCCATTTCTGCACACTCTAGGAGTATGGATGCCTCTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCTCCATTTCTGCACACTCTAGGAGTATGGATGCCTCTGGACA  400

seq1  GGCTTTAGGAAAGTCAGATATAAAGGACCAGGACAAGGATGCTGAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAGGAAAGTCAGATATAAAGGACCAGGACAAGGATGCTGAATTTA  450

seq1  CATCTGACTTATCGCTGCCTCCCCCATACTGTGTATCCTGTGTATTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACTTATCGCTGCCTCCCCCATACTGTGTATCCTGTGTATTTTCA  500

seq1  GTTTTAGATTACTCCTGTGCCCAGCTACCATCCTTTGCTCTCAGCTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGATTACTCCTGTGCCCAGCTACCATCCTTTGCTCTCAGCTCTGG  550

seq1  CTTAGTTGTCAAAAATATTGATATTTTGGCAACAGCGGGAGGGAGAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTGTCAAAAATATTGATATTTTGGCAACAGCGGGAGGGAGAGACA  600

seq1  GAGACAGGGAGAGACAGGGAGAGGAGAATAGGTGGGCAGAAGGAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGAGAGACAGGGAGAGGAGAATAGGTGGGCAGAAGGAGAGAGA  650

seq1  GTATGAATCACTGTTCTTAGATGATGCAGGTGATACAGAAGAGACATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATCACTGTTCTTAGATGATGCAGGTGATACAGAAGAGACATGAA  700

seq1  GTGGATACTGCAAGAAGATAGCAGCTACAAACCTGGACAAGTGGCTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATACTGCAAGAAGATAGCAGCTACAAACCTGGACAAGTGGCTGGAA  750

seq1  TTAGGAGTCTGGAAACCAAGTCCTGCTGTGACCTGATAACATTGCCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTCTGGAAACCAAGTCCTGCTGTGACCTGATAACATTGCCCTTT  800

seq1  ACAAGCCACTTGCCTTGGTTGCTGTGTTCATAGAGTCAATTTGAGTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCACTTGCCTTGGTTGCTGTGTTCATAGAGTCAATTTGAGTCAGG  850

seq1  AATCTTCTTGATGAGTCTGAGACCAGCTAACTATATCAACCTGACACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTGATGAGTCTGAGACCAGCTAACTATATCAACCTGACACTGG  900

seq1  CTAACAGGCTACCAGTGCCTCCAAAGAGGCTTCAGTTG-TTGAGGCAGAT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAACAGGCTACCAGTGCCTCCAAAGAGGCTTCAGTTGTTTGAGGCAGAT  950

seq1  CC-TTAAAGCTA-TGAGGCTTTCAGATAGGGGCATGG-AGCCAGTGACCT  996
      || ||||||||| ||||||||||||||| |||||||| ||||||||||||
seq2  CCTTTAAAGCTATTGAGGCTTTCAGATA-GGGCATGGAAGCCAGTGACCT  999

seq1  AAGGGCTTTTGGGGGAAGGAGGGGTCTGAAACATTCCAAAGTGTGGTCAG  1046
      ||||||||||||||| |||| ||||||||||||||||||||||| |||||
seq2  AAGGGCTTTTGGGGG-AGGA-GGGTCTGAAACATTCCAAAGTGT-GTCAG  1046

seq1  AGTTCTTGCAGGCAGATGTATCAAG-TGCAGAACTATGCTATCTATGTG-  1094
      ||||| |||||||  |||||||||| ||||||||||||||||||||||| 
seq2  AGTTC-TGCAGGCCAATGTATCAAGTTGCAGAACTATGCTATCTATGTGC  1095

seq1  CTCACGTGGGCTG-CTGAGTGATAACTGAGTTTGTTAGCCTG-AGGGATC  1142
      ||||| ||||||| |||| |||| ||||| ||   ||||||| |||||||
seq2  CTCAC-TGGGCTGTCTGA-TGAT-ACTGACTT--GTAGCCTGAAGGGATC  1140