BAC Information

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BAC

Clone NameB6Ng01-250C05
Chromosome18 (Build37)
Map Location 49,736,405 - 49,857,298
singlet/doubletdoublet
Overlap geneDtwd2
Upstream geneLOC545470
Downstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250C05.bB6Ng01-250C05.g
ACCGA057767GA057768
length1,1551,112
definitionB6Ng01-250C05.b B6Ng01-250C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,736,405 - 49,737,564)(49,856,191 - 49,857,298)
sequence
gaattctcctgttgcaaagtgaccgcaagagcctaagaccgcttcctttc
aatttacgccaatgaaacagaaattgatgtattgctctttgtataacttt
gggttttggtctcaattgtatctctagtgacaagaacaaataggtctgta
ggatttgtctcctatctttccctgacagtgatttcaggacaggctagtga
caaccagaaaagcacatttctctctgactggttcacaattactctaaagt
gacaaagtattgcataggctaaaaaaaaaatcacataatggagaggaaaa
aatgttttatgtttaatatcacacaaaaatgtataaacatgaagacagtc
ttagctaggcatggttgagcacattagtaatctgggcagaggcaggggga
ttacaaatttgaggccagccaaacttacaaagttcgacccccatctcaaa
acaaattttgttaattaatactattattaaaaatgtagatcagtttcact
tgcttcaccttggtttgagtcccagcaacataaaaggaataaatcaataa
aagaagcattattcttgggttgttaatcactccatattccctatcactaa
taattttgcatctttactatttctgttctctgagaagttgacacagatta
atgtttctctgtgtgttcttagagataaagggaactcccccaagaactct
gctgtctcttttcggaactcaaaccaaatttgcacattgtagatccaaaa
ctcaagtctttaacctaagtctgatgcaatcatatcaggagacatatgtg
cccaaacaccatggcaactgagccagtgttgcttgggagctcagtcattc
gctcacctttcctcaatccaaaatcatttgtgcttcacctgttcccacat
caaattatcctataattgcgtttcccattacagagttctatcaacagcat
caatggcaccaactggctcctggacctcaggatgtgtgcagctgctcctt
tttcctccccttggatgtacagtcagtgtttacagtgtttagagaattat
ttagagaagagagaaattgttcttgaatcatagaatggactaggagaatc
agggtggtgcctttgcaggtatgagatgtgtcctcaaagtccaaacctta
cacac
gaattcctgtggagacatataattttgaaataacctgcattctctatggg
ggatgctgtgcataactttcagtgttcactgagcaagctaactggtggta
agaggtttttgatgaagtttctacatggaaatgactgaagtaaattataa
taaagctatcattttaagaacatatttctataagtagctctacttacttt
tttttttttttttttttaaagaaaaacaactttcaatgtggaagatacat
gcccttaccttatttggagaatatttactgatattttgtatagaaaaaga
gaaatttatacattttatatttatatccaatttacagttaagcatacact
ttggcaagatcacgatgtttcattttgactgttgttcacaattgctaagg
tttcctaaattcagggtgacagtggaagggagagtcaagcatgacttagt
ttgtgatctttagttgtgattttgataaatacctctgtgtgtggcatgaa
cacacaccagtttctgattatttttatgctttttttgtttgtttgttatt
gggttagatcagacactcattaagaacttggctggtcctaattagaatgc
taacagatatgtagcatgttacagaaagatattaaaatttaggtttgtct
taagttgctgacttatatttgcatttaaaaataagtcggtcttttataac
ctaaatgtctagtatcaattgaatatttatataataatgaaatagtagta
ttatgtataatggtttcttaaggaatgagttaaaatcatctcataataat
tttttatgttgaaaataaactttataaaatctttttgaattgctatgatt
gctctttaagaacaatctgacaaatgatactatttatattttccaaacat
caatttggtgtttaccatttagaataaccttttatgtttaacataatact
taaattacttaaggttattactttggctacatattttttccttctttctt
ttaagaaattttatctggatggaagaaagatggcaagttgagaatcctgg
cactttgatgcattcggtgatatccttaccgcatcagatacctggcttac
tggggtgtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_49736405_49737564
seq2: B6Ng01-250C05.b_45_1199

seq1  GAATTCTCCTGTTGCAAAGTGACCGCAAGAGCCTAAGACCGCTTCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTTGCAAAGTGACCGCAAGAGCCTAAGACCGCTTCCTTTC  50

seq1  AATTTACGCCAATGAAACAGAAATTGATGTATTGCTCTTTGTATAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACGCCAATGAAACAGAAATTGATGTATTGCTCTTTGTATAACTTT  100

seq1  GGGTTTTGGTCTCAATTGTATCTCTAGTGACAAGAACAAATAGGTCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTGGTCTCAATTGTATCTCTAGTGACAAGAACAAATAGGTCTGTA  150

seq1  GGATTTGTCTCCTATCTTTCCCTGACAGTGATTTCAGGACAGGCTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGTCTCCTATCTTTCCCTGACAGTGATTTCAGGACAGGCTAGTGA  200

seq1  CAACCAGAAAAGCACATTTCTCTCTGACTGGTTCACAATTACTCTAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGAAAAGCACATTTCTCTCTGACTGGTTCACAATTACTCTAAAGT  250

seq1  GACAAAGTATTGCATAGGCTAAAAAAAAAATCACATAATGGAGAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGTATTGCATAGGCTAAAAAAAAAATCACATAATGGAGAGGAAAA  300

seq1  AATGTTTTATGTTTAATATCACACAAAAATGTATAAACATGAAGACAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTATGTTTAATATCACACAAAAATGTATAAACATGAAGACAGTC  350

seq1  TTAGCTAGGCATGGTTGAGCACATTAGTAATCTGGGCAGAGGCAGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAGGCATGGTTGAGCACATTAGTAATCTGGGCAGAGGCAGGGGGA  400

seq1  TTACAAATTTGAGGCCAGCCAAACTTACAAAGTTCGACCCCCATCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATTTGAGGCCAGCCAAACTTACAAAGTTCGACCCCCATCTCAAA  450

seq1  ACAAATTTTGTTAATTAATACTATTATTAAAAATGTAGATCAGTTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTGTTAATTAATACTATTATTAAAAATGTAGATCAGTTTCACT  500

seq1  TGCTTCACCTTGGTTTGAGTCCCAGCAACATAAAAGGAATAAATCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCACCTTGGTTTGAGTCCCAGCAACATAAAAGGAATAAATCAATAA  550

seq1  AAGAAGCATTATTCTTGGGTTGTTAATCACTCCATATTCCCTATCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCATTATTCTTGGGTTGTTAATCACTCCATATTCCCTATCACTAA  600

seq1  TAATTTTGCATCTTTACTATTTCTGTTCTCTGAGAAGTTGACACAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGCATCTTTACTATTTCTGTTCTCTGAGAAGTTGACACAGATTA  650

seq1  ATGTTTCTCTGTGTGTTCTTAGAGATAAAGGGAACTCCCCCAAGAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTCTGTGTGTTCTTAGAGATAAAGGGAACTCCCCCAAGAACTCT  700

seq1  GCTGTCTCTTTTCGGAACTCAAACCAAATTTGCACATTGTAGATCCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCTTTTCGGAACTCAAACCAAATTTGCACATTGTAGATCCAAAA  750

seq1  CTCAAGTCTTTAACCTAAGTCTGATGCAATCATATCAGGAGACATATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCTTTAACCTAAGTCTGATGCAATCATATCAGGAGACATATGTG  800

seq1  CCCAAACACCATGGCAACTGAGCCAGTGTTGCTTGGGAGCTCAGTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACACCATGGCAACTGAGCCAGTGTTGCTTGGGAGCTCAGTCATTC  850

seq1  GCTCACCTTTCCTCAATCCAAAATCATTTGTGCTTCACCTGTTCCCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTTTCCTCAATCCAAAATCATTTGTGCTTCACCTGTTCCCACAT  900

seq1  CAAATTATCCTATAATTGCGTTTCCCATTACAGAGTTCTATCAACAGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATCCTATAATTGCGTTTCCCATTACAGAGTTCTATCAACAGCAT  950

seq1  CAATGGCACCAACTGGCTCCTGGACCTCAGGGATGTGGTGCAGGCTGCTC  1000
      ||||||||||||||||||||||||||||| |||||| ||||| |||||||
seq2  CAATGGCACCAACTGGCTCCTGGACCTCA-GGATGT-GTGCA-GCTGCTC  997

seq1  CTTTTTCCTCCCCTTGGATGTACAGGTCAGTGTTTACAGTGTTTAGAGAA  1050
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTTTTCCTCCCCTTGGATGTACA-GTCAGTGTTTACAGTGTTTAGAGAA  1046

seq1  TTATTTAAGAGAAGGAGA-AAATTGTTC-TGAATCCATAG-ATGGACTAA  1097
      |||||| |||||| |||| ||||||||| ||||| ||||| ||||||| |
seq2  TTATTT-AGAGAA-GAGAGAAATTGTTCTTGAAT-CATAGAATGGACT-A  1092

seq1  GGAG-ATCA-GGTGGTGCCTTTTTGCA-GTATGAGATGT-TCCTCAAAGT  1143
      |||| |||| |||||||||  |||||| ||||||||||| ||||||||||
seq2  GGAGAATCAGGGTGGTGCC--TTTGCAGGTATGAGATGTGTCCTCAAAGT  1140

seq1  CACAAAACTTAACACAC  1160
      | |||| ||| ||||||
seq2  C-CAAACCTT-ACACAC  1155

seq1: chr18_49856191_49857298
seq2: B6Ng01-250C05.g_69_1180 (reverse)

seq1  CCCCACA-CCCTGT-AGCCATGTATCTGATGCTGTTAGGAT-TCACAG-A  46
      ||||||| ||| || ||||| ||||||||||| || ||||| |||| | |
seq2  CCCCACACCCCAGTAAGCCAGGTATCTGATGCGGTAAGGATATCACCGAA  50

seq1  TGCATCAAAGTGCCAAGTATCTCAACTCTGCCATCTTTCTTCTATCTAGA  96
      ||||||||||||||| |  |||||||| |||||||||||||| ||| |||
seq2  TGCATCAAAGTGCCAGGATTCTCAACT-TGCCATCTTTCTTCCATCCAGA  99

seq1  TATATCTTCTTAAAAAAGAAAGAAAGAAAAAATATGTAGCCAAAGTAATA  146
      || |  |||||  ||||||||||| |||||||||||||||||||||||| 
seq2  TAAAATTTCTT--AAAAGAAAGAAGGAAAAAATATGTAGCCAAAGTAAT-  146

seq1  AACTTTAAGT-ATTTAAGTATTATGTTTAAAACATAAAA-GTTATTCTAA  194
      ||| |||||| ||||||||||||||||  |||||||||| ||||||||||
seq2  AACCTTAAGTAATTTAAGTATTATGTT--AAACATAAAAGGTTATTCTAA  194

seq1  ATGGTAAACA-CAAATTGATGTTTGG-AAATATAAATAGTATCATTTGTC  242
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  ATGGTAAACACCAAATTGATGTTTGGAAAATATAAATAGTATCATTTGTC  244

seq1  AGATTGTTCTTAAAGAGCAATCATAGCACT--CAAAAGATTTTATAAAGT  290
      |||||||||||||||||||||||||||| |   |||||||||||||||||
seq2  AGATTGTTCTTAAAGAGCAATCATAGCAATTCAAAAAGATTTTATAAAGT  294

seq1  TTATTTTCAACATAAAAAATTATTATGAGATGATTTTAACTCATTCCTTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAACATAAAAAATTATTATGAGATGATTTTAACTCATTCCTTA  344

seq1  AGAAACCATTATACATAATACTACTATTTCATTATTATATAAATATTCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCATTATACATAATACTACTATTTCATTATTATATAAATATTCAA  394

seq1  TTGATACTAGACATTTAGGTTATAAAAGACCGACTTATTTTTAAATGCAA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTAGACATTTAGGTTATAAAAGACCGACTTATTTTTAAATGCAA  444

seq1  ATATAAGTCAGCAACTTAAGACAAACCTAAATTTTAATATCTTTCTGTAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGTCAGCAACTTAAGACAAACCTAAATTTTAATATCTTTCTGTAA  494

seq1  CATGCTACATATCTGTTAGCATTCTAATTAGGACCAGCCAAGTTCTTAAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTACATATCTGTTAGCATTCTAATTAGGACCAGCCAAGTTCTTAAT  544

seq1  GAGTGTCTGATCTAACCCAATAACAAACAAACAAAAAAAGCATAAAAATA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGATCTAACCCAATAACAAACAAACAAAAAAAGCATAAAAATA  594

seq1  ATCAGAAACTGGTGTGTGTTCATGCCACACACAGAGGTATTTATCAAAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACTGGTGTGTGTTCATGCCACACACAGAGGTATTTATCAAAAT  644

seq1  CACAACTAAAGATCACAAACTAAGTCATGCTTGACTCTCCCTTCCACTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTAAAGATCACAAACTAAGTCATGCTTGACTCTCCCTTCCACTGT  694

seq1  CACCCTGAATTTAGGAAACCTTAGCAATTGTGAACAACAGTCAAAATGAA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAATTTAGGAAACCTTAGCAATTGTGAACAACAGTCAAAATGAA  744

seq1  ACATCGTGATCTTGCCAAAGTGTATGCTTAACTGTAAATTGGATATAAAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGTGATCTTGCCAAAGTGTATGCTTAACTGTAAATTGGATATAAAT  794

seq1  ATAAAATGTATAAATTTCTCTTTTTCTATACAAAATATCAGTAAATATTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTATAAATTTCTCTTTTTCTATACAAAATATCAGTAAATATTC  844

seq1  TCCAAATAAGGTAAGGGCATGTATCTTCCACATTGAAAGTTGTTTTTCTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATAAGGTAAGGGCATGTATCTTCCACATTGAAAGTTGTTTTTCTT  894

seq1  TAAAAAAAAAAAAAAAAAAAAGTAAGTAGAGCTACTTATAGAAATATGTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAAAAAAAAAAGTAAGTAGAGCTACTTATAGAAATATGTT  944

seq1  CTTAAAATGATAGCTTTATTATAATTTACTTCAGTCATTTCCATGTAGAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATGATAGCTTTATTATAATTTACTTCAGTCATTTCCATGTAGAA  994

seq1  ACTTCATCAAAAACCTCTTACCACCAGTTAGCTTGCTCAGTGAACACTGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAAAAACCTCTTACCACCAGTTAGCTTGCTCAGTGAACACTGA  1044

seq1  AAGTTATGCACAGCATCCCCCATAGAGAATGCAGGTTATTTCAAAATTAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCACAGCATCCCCCATAGAGAATGCAGGTTATTTCAAAATTAT  1094

seq1  ATGTCTCCACAGGAATTC  1108
      ||||||||||||||||||
seq2  ATGTCTCCACAGGAATTC  1112