BAC Information

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BAC

Clone NameB6Ng01-250D14
Chromosome18 (Build37)
Map Location 12,124,797 - 12,275,166
singlet/doubletdoublet
Overlap gene6030446N20Rik
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1
Downstream geneRiok3, 3110002H16Rik, Npc1, Ankrd29, Lama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250D14.bB6Ng01-250D14.g
ACCGA057831GA057832
length1,0831,128
definitionB6Ng01-250D14.b B6Ng01-250D14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,274,079 - 12,275,166)(12,124,797 - 12,125,939)
sequence
gaattcagtcagaggccaggagagaagccagattgaatcattcgacttga
agaggagtctgagccatatcatctgagttgaaccagcctgccagagctca
aaaagaacaagaaagggcaagcttactccgcatccagtctcagaggctga
agacaatctaggcctggatacgattgtactgaggctagaagcttccagga
ctaggactaggttaacagatagaagcagtaagcctaagatgacaattaat
acacgagaataaaaattacatttacccaactaataatatgctcattgtgt
aatccttccttttgcctttgggtccttaaagcaatgtatagttagtcttc
tgtggtctttttttgggggggtattcttttgttaagtttttagggagaag
agctgctgactttttttttttaggcatgtgccatttacttttgtatagag
cacctccctcatgcttctctgtagagatgtgtttgggggatggagacatg
gcgtcatggttaagagcacaagctgttcctaaagacccgagcacacacat
gatgtcgcataactgtctataattccaattcctgaggacacccactccat
gcctccataggcgctgcatacttgtgctgcacagacctgaatacaaaaac
acccgtactctgccacatgtctctttgggtggaaaactgaccatgtttaa
acctctgctctagacctggtggattcatgaggtctgttctagttggcctg
ttctcagctggaccattgaaacactaggcttactgctgactaggtgtctt
ctatgccttgggagatggggcatattatggagaatgtgggcagtgtctac
aattcccacactatgaatttacatggacattttgaggttgcatgtctgtg
ctttgggaatccctaggcaggagagagagtttatcgtgggaagggactgt
ctaagtatagatagattctttaattatcatcttttctctcgtagaccaag
gtatcattggataatatcactaccaatggttggtgttaaggtccatcttg
agagtagagttctctcatgtcattgagaactaa
gaattcttgctttaagcacttactctctgacagtgtaaacctagggagtc
cccaggctgagctgagacgagatactcaggaagctgctcgagatactcag
gaagctgctcgcctcagcagaggcaaccctgccttccctgaccaagacaa
ctggcaaagaccatggaggatgaggagagagaagactctagaagaggaga
attcaactttgctaccgaataaaaagctctttgccttaggacaaggcgga
atttcctcccatagtgaattccccacaaaggggtggggagttggctaact
atgaactaagtctcctcaagcaagtctgagcaaagctgcccttccccaga
ctgcctctcagctctcctccactccacccccacacttgggtacccaatct
ctaaggcttcttgagttgccctcccccagctgtatctggcacttagatgt
tgctttaaaaagtattccccaaaacttggctctcaaggtaactaagctgg
aagaaaggccctgttttcatttggtgtctgcctctggatcacctggcctc
ctctgcatggacattactcaccaaaagtgtatccatgtagataactaaca
tactccaacaaagtcactgtcccaaagctgcagtcccctttaattctagg
gatagcaaggtctataggcaggacagcccaacctcaaataactacagcaa
ttatggaggagagcctagccctccagtaagacccaacgtctaccatgcag
gatctaggcagagacaatgacagcaagacacaccctggccagaacagctg
agtttatacataccattgaccctctcctgattcttgtaagaacacaggcc
tgcccctaaaagacagtggtccctttaaaaggccagacccatcccatagc
ctgcagagatctggcccccacctcctggcagctctctctggaacagagtt
aggaagcctgtcagtgctgctaaccagcagctcctgattttatagtccta
tcactacctgctcctcatgctctctgtcacgtactctgtctccactaaat
cacatgagtgaaaattctgtcaccccaaaagtcatatttctttcttgggg
gaatgactaaaactgctagaattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_12274079_12275166
seq2: B6Ng01-250D14.b_44_1126 (reverse)

seq1  TTAGTTACAAATGACATGAGGGACCTCATCTC---AGATGTGACTGTAAC  47
      ||||||   ||||||||||| || |||  |||   ||||| |||  ||||
seq2  TTAGTTCTCAATGACATGAGAGAACTCTACTCTCAAGATG-GACCTTAAC  49

seq1  A-CACCCATGTGTTGTGATATTATACCAAGAACCCCTGGCCT-CCAGGAC  95
      | || ||||  || |||||||||| | | ||  || ||| || | ||   
seq2  ACCAACCATTGGTAGTGATATTATCCAATGATACCTTGGTCTACGAGAGA  99

seq1  AAAGTCTCTTATGTATGATTCAACTCT-GACTTAGGCCAGTCCCTCCCCA  144
      ||||    | ||  | || || | |||  ||||| | |||||||| ||||
seq2  AAAGATGATAATTAAAGAATCTA-TCTATACTTA-GACAGTCCCTTCCCA  147

seq1  GGATAAACTCTCTCTCCCTGCCTTGGGGATTCCCAAAGCACACGACATGC  194
       |||||||||||||| |||||| | ||||||||||||||||| |||||||
seq2  CGATAAACTCTCTCT-CCTGCC-TAGGGATTCCCAAAGCACA-GACATGC  194

seq1  AACCTCAAAATGTGCCATGTTAATTCCTACTTCTTGGAATTTGTAGACAC  244
      ||||||||||||| |||||| ||||| || |   ||| | ||||||||||
seq2  AACCTCAAAATGT-CCATGTAAATTCATAGT--GTGGGAATTGTAGACAC  241

seq1  TGCCCACATTCTCCATAATATGCCCCATCTCCCAATGCATTAGAAGACAA  294
      ||||||||||||||||||||||||||||||||||| ||| ||||||||| 
seq2  TGCCCACATTCTCCATAATATGCCCCATCTCCCAAGGCA-TAGAAGACAC  290

seq1  CTAGTCAGCAGTAAGACCTAGTGTTTCACTGGTCCAGCTGAGAACAGGCC  344
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CTAGTCAGCAGTAAG-CCTAGTGTTTCAATGGTCCAGCTGAGAACAGGCC  339

seq1  AACTAGAACAGGCCTCCTGAATCCACCAGGTCTAGAGCAGAGGTCTAAAC  394
      ||||||||||| |||| ||||||||||||||||||||||||||| |||||
seq2  AACTAGAACAGACCTCATGAATCCACCAGGTCTAGAGCAGAGGTTTAAAC  389

seq1  CTGGTCAGTTTTCCACCCAAAGAGACATGTGGCAGAGTATGGGTGTTTTT  444
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGGTCAGTTTTCCACCCAAAGAGACATGTGGCAGAGTACGGGTGTTTTT  439

seq1  GTCTTCATGTCTGTGCAGCACAAGTATGCAGCGCCTATGGAGGCATGGAG  494
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCAGGTCTGTGCAGCACAAGTATGCAGCGCCTATGGAGGCATGGAG  489

seq1  TGGGTGTCCTCTGGAATTGGAATTATAGACAGTTATGCGACATCACGTGT  544
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  TGGGTGTCCTCAGGAATTGGAATTATAGACAGTTATGCGACATCATGTGT  539

seq1  GTGCTCGGGTCTTTAGGAACAGCTTGTGCTCTTAACCATGACGCCATGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCGGGTCTTTAGGAACAGCTTGTGCTCTTAACCATGACGCCATGTC  589

seq1  TCCATCCCCCAAACACATCTCTACAGAGAAGCATGAGGGAGGTGCTCTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCCCAAACACATCTCTACAGAGAAGCATGAGGGAGGTGCTCTAT  639

seq1  ACATATGTAAATGGCATATGCTTAAAAAAAAAAAGTCAGCAGCTCTTCTC  694
      ||| | |||||||||| |||| ||||||||||||||||||||||||||||
seq2  ACAAAAGTAAATGGCACATGCCTAAAAAAAAAAAGTCAGCAGCTCTTCTC  689

seq1  CCTAAAAACTTAACAAAAGAATACCCCCCCAAAAAAAGACCACAGAAGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAACTTAACAAAAGAATACCCCCCCAAAAAAAGACCACAGAAGAC  739

seq1  TAACTATACATTGCTTTAAGGACCCAAAGGCAAAAGGAAGGATTACACAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATACATTGCTTTAAGGACCCAAAGGCAAAAGGAAGGATTACACAA  789

seq1  TGAGCATATTATTAGTTGGGTAAATGTAATTTTTATTCTCCTGTATTAAT  844
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGCATATTATTAGTTGGGTAAATGTAATTTTTATTCTCGTGTATTAAT  839

seq1  TGTCATCTTAGGCTTACTGCTTCTATCTGTTAACCTAGTCCTAGTCCTGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTTAGGCTTACTGCTTCTATCTGTTAACCTAGTCCTAGTCCTGG  889

seq1  AAGCTTCTAGCCTCAGTACAATCGTATCCAGGCCTAGATTGTCTTCAGCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTAGCCTCAGTACAATCGTATCCAGGCCTAGATTGTCTTCAGCC  939

seq1  TCTGAGACTGGCTGCGGAGTAAGCTTGCCCTTTCTTGTTCTTTCTGAGCT  994
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  TCTGAGACTGGATGCGGAGTAAGCTTGCCCTTTCTTGTTCTTTTTGAGCT  989

seq1  CTGGCAGGCTGGTTCAACTCAGCTGCTCTGGCTCAGACTCCTCTCCAAGC  1044
      |||||||||||||||||||||| || | |||||||||||||||| |||| 
seq2  CTGGCAGGCTGGTTCAACTCAGATGATATGGCTCAGACTCCTCTTCAAGT  1039

seq1  TGACTGATTCAATCTGGCTTCTCTCCTGGCCTCTGACTGAATTC  1088
       || ||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGATTCAATCTGGCTTCTCTCCTGGCCTCTGACTGAATTC  1083

seq1: chr18_12124797_12125939
seq2: B6Ng01-250D14.g_66_1193

seq1  GAATTCTTTCAATAAAGCACTTACTCTCTGACAGTGTAAACCTAGGGAGT  50
      |||||||| |  | ||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGC-TTTAAGCACTTACTCTCTGACAGTGTAAACCTAGGGAGT  49

seq1  AACCCAGGCTGAGCTGAGACGAGATACTCAGGAAGCTGCTCGAGATACTC  100
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CCCCAGGCTGAGCTGAGACGAGATACTCAGGAAGCTGCTCGAGATACTC  98

seq1  AGGAAGCTGCTCGCCTCAGCAGAGGCAACCCTGCCTTCCCTGACCAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGCTCGCCTCAGCAGAGGCAACCCTGCCTTCCCTGACCAAGAC  148

seq1  AACTGGC-AAGACCATGGAGGATGAGGAGAGAGAAGACTCTAGAAGAGGA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCAAAGACCATGGAGGATGAGGAGAGAGAAGACTCTAGAAGAGGA  198

seq1  GAATTCAGCTTTGCTACCGAATAAAAAGCTCTTTGCCTTAGGACAAGGCG  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTTGCTACCGAATAAAAAGCTCTTTGCCTTAGGACAAGGCG  248

seq1  GAATTTCCTCCCATAGTGAATTCCCCACAAAGGGGTGGGGAGTTGGCTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCTCCCATAGTGAATTCCCCACAAAGGGGTGGGGAGTTGGCTAA  298

seq1  CTATAAACTAAGTCTCCTCAGGCAAGTCTGAGCAAAACTGCCCTTCCCCA  349
      |||| ||||||||||||||| ||||||||||||||| |||||||||||||
seq2  CTATGAACTAAGTCTCCTCAAGCAAGTCTGAGCAAAGCTGCCCTTCCCCA  348

seq1  GACTGCCTCTCAGCTCTCCTCCACTCCACCCCCACACTTGGGTACCCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCTCAGCTCTCCTCCACTCCACCCCCACACTTGGGTACCCAAT  398

seq1  CTCTAAGGCTTCTTGAGTTGCCCTCCCCCAGCTGTATCTGGCACTTAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGCTTCTTGAGTTGCCCTCCCCCAGCTGTATCTGGCACTTAGAT  448

seq1  GTTGCTTTAAAAAGTATTCCCCAAAACTTGGCTCTCAAGGTAACTAAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTAAAAAGTATTCCCCAAAACTTGGCTCTCAAGGTAACTAAGCT  498

seq1  GGAAGAAAGGCCCTGTTTTCATTTGGTGTCTGCCTCTGGATCACCTGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGGCCCTGTTTTCATTTGGTGTCTGCCTCTGGATCACCTGGCC  548

seq1  TCCTCTGCATGGACATTAGTCACCAAAAGTGTATCCATGTAGATAACTAA  599
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCTCTGCATGGACATTACTCACCAAAAGTGTATCCATGTAGATAACTAA  598

seq1  CATACTCCAAC-AAGTCACTGTCCCAAAGCTGCAGTCCCCTTTAATTCTA  648
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCAACAAAGTCACTGTCCCAAAGCTGCAGTCCCCTTTAATTCTA  648

seq1  GGGATAGCAAGGTCTATAGGCAGGACAGCCCAACCTCAAATAACTACAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGCAAGGTCTATAGGCAGGACAGCCCAACCTCAAATAACTACAGC  698

seq1  AATTATGGTGGAGAGCCTAGCCCTCCAGTAAGACCCAAGGTCTACCATGC  748
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AATTATGGAGGAGAGCCTAGCCCTCCAGTAAGACCCAACGTCTACCATGC  748

seq1  AGGATCTAGGCAGAGACAATGACAGGCAAGGACACACCCTGGCCAGAACA  798
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AGGATCTAGGCAGAGACAATGACA-GCAA-GACACACCCTGGCCAGAACA  796

seq1  GCTGAGTTTATACATACCATTGACCCTCTCCTGATTCTTGTAAGAACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTTATACATACCATTGACCCTCTCCTGATTCTTGTAAGAACACA  846

seq1  GGCCTGCCCCTAAAAGACAGTGGTCCCTTTAAAAGGCCAGACCCATCCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCCCTAAAAGACAGTGGTCCCTTTAAAAGGCCAGACCCATCCCA  896

seq1  TAGCCTGCAGAGATCTGG-CCCCACCTCCTGGCAGCTCTCTCTGGAACAG  947
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGCCTGCAGAGATCTGGCCCCCACCTCCTGGCAGCTCTCTCTGGAACAG  946

seq1  AGTTAGGAAG-CTGTCAGTGCTGCTAA-CAGCAGCTCCTGA-TTTATGGT  994
      |||||||||| |||||||||||||||| ||||||||||||| ||||| ||
seq2  AGTTAGGAAGCCTGTCAGTGCTGCTAACCAGCAGCTCCTGATTTTATAGT  996

seq1  CCTAACCACTACCTGGCTCCTCCATGCTCTCTGTCACGTACTCTGTCTTC  1044
      ||| | |||||||| |||||| ||||||||||||||||||||||||| ||
seq2  CCT-ATCACTACCT-GCTCCT-CATGCTCTCTGTCACGTACTCTGTC-TC  1042

seq1  AACTAAATCACATGGTGTGAAAATTCTGGTCACCCCAAAAAGGTCATATT  1094
       |||||||||||| | ||||||||||| ||||||||||||  ||||||||
seq2  CACTAAATCACAT-GAGTGAAAATTCT-GTCACCCCAAAA--GTCATATT  1088

seq1  TCTTTCCTTTGGGGGAGTGACCTAGAAACTGCTTAGGGAAAATTTTTTT  1143
      ||||||  |||||||| ||| ||| ||||||||     | |||||||||
seq2  TCTTTC--TTGGGGGAATGA-CTA-AAACTGCT-----AGAATTTTTTT  1128