BAC Information

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BAC

Clone NameB6Ng01-252A13
Chromosome18 (Build37)
Map Location 45,128,538 - 45,275,288
singlet/doubletdoublet
Overlap geneLOC626309
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
Downstream geneLOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252A13.bB6Ng01-252A13.g
ACCGA059141GA059142
length1,033639
definitionB6Ng01-252A13.b B6Ng01-252A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,274,256 - 45,275,288)(45,128,538 - 45,129,176)
sequence
gaattctacagctagtatgagagtctgttatgtactgagacagttacaat
tccaattctattaaacactgttctgaaatagagaatgcttcctgaaatat
gtgccaccgttgttgttgactgtaatagtagaactgctcccagaatccaa
tgggatgtagagaaagtcaattcctatgctgactgcatagtcactgtctg
ccaagctactctagctctgctgatgtcacttagggcatttaccagcctga
tctaaggacattgcatgactcctgcctgtctaacagggaggcttcccttt
gcttcctccgctgtacactctttgcactttctccacagtctacaggtctt
tgctctcacatcttggtacatccctccttcaactcttgcaactttgacca
ttaggtttctcagaataccagtgagcaatcctacctctcaccgatgacta
tggttttgatgactaactataaatcaagaagcacccatctcccaattaca
catctaacaaatggctcctcctccacctgctttcaggctgagcatgtgac
aactcatcacaactaacacttgattgatatgttctagccttcttacctct
gacattgttcctataaaagaacaactgttataccctccccatctaaccac
tcgcaccctttagtctatatcttagattcctcagttatatccatttcttt
tctttttattgctccttattagcagcttcgtatcagtgtgatgaaatatc
agagtcagctaacttcatttaaaaaagaagtctatttaggtcacagtttt
acaagttgaaaacataaatattgtggtgtaactctgttgagagtcaatat
gagggtggtaggagtgtgtgggaatgagaatgcccacaaagccagacaga
aagtagaaaaagggacaggcccatgattctctttaaatcccatcctctct
ccctcacgcacgcgcgcacatgcacactcactcacccacaaacatatgtg
tgtgtgtgttgtgtggtgtgagagaaagagaga

gaattccatttgaaataacatctgtatgaaacatagccttatctgctgtt
gggctggggaatgaaggggtgatatggatctcacctgtatgtttagtgct
ttagtaaggcctgtttcctgcttcctgttcttgttgctcttcctccctcc
catcctcctcccctccgctctcctccctcctcctcttcctccatcttttc
ctcctttttcttcttcaccttttagttcaaaagaggaagcagggcctggg
gtcagagtatggtctctggatctagatgagatgtgcttgaattccagcac
tgttgggtatctttatcattttgagtaagttctttaatctctcttcattt
cacttttaccatccatagattttttaaactaataataacccacatcttaa
agttattttaaattaatgttttacaggttgggtatggtgatatatgcctg
tgatctcagtactccataggcaaaggcaggaggaacaagagtttgaggca
accctaagatactactagcaagaccctctcttagaaacaaccaaaggaaa
gagaacagagggtgtagttcatgtaaatacataaagtagtggattttttt
gtttgtttgtttgtggttggttagttggttttttgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45274256_45275288
seq2: B6Ng01-252A13.b_44_1076 (reverse)

seq1  TCTCTCTCTCTCTCACA-CACAC-ACACACACACACATATGTTTGTGTGT  48
      ||||||| ||||||||| ||||| ||||||||||||||||||||||| ||
seq2  TCTCTCTTTCTCTCACACCACACAACACACACACACATATGTTTGTGGGT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGATTTT  98
      | ||| |||||  |||| | | ||| ||| | | | | | ||| ||||| 
seq2  GAGTGAGTGTGCATGTGCGCGCGTGCGTGAGGGAGAGAGGATGGGATTT-  99

seq1  AAAGGAGAATC-TTGGCCTGTCCCTTTTTTCTACTTTCTGTCTGGCCTTG  147
       || ||||||| | |||||||||| ||||||||||||||||||||| |||
seq2  -AAAGAGAATCATGGGCCTGTCCC-TTTTTCTACTTTCTGTCTGGCTTTG  147

seq1  TGCGCATTCTCATTCCCACACACTCCTACCACCCTCATATTGACTCTCAA  197
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTCTCATTCCCACACACTCCTACCACCCTCATATTGACTCTCAA  197

seq1  CAGAGTTACACCACAATATTTATGTTTTCAACTTGTAAAACTGTGACCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTACACCACAATATTTATGTTTTCAACTTGTAAAACTGTGACCTA  247

seq1  AATAGACTTCTTTTTTAAATGAAGTTAGCTGACTCTGATATTTCATCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTTCTTTTTTAAATGAAGTTAGCTGACTCTGATATTTCATCACA  297

seq1  CTGATACGAAGCTGCTAATAAGGAGCAATAAAAAGAAAAGAAATGGATAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACGAAGCTGCTAATAAGGAGCAATAAAAAGAAAAGAAATGGATAT  347

seq1  AACTGAGGAATCTAAGATATAGACTAAAGGGTGCGAGTGGTTAGATGGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGAATCTAAGATATAGACTAAAGGGTGCGAGTGGTTAGATGGGG  397

seq1  AGGGTATAACAGTTGTTCTTTTATAGGAACAATGTCAGAGGTAAGAAGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAACAGTTGTTCTTTTATAGGAACAATGTCAGAGGTAAGAAGGC  447

seq1  TAGAACATATCAATCAAGTGTTAGTTGTGATGAGTTGTCACATGCTCAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATATCAATCAAGTGTTAGTTGTGATGAGTTGTCACATGCTCAGC  497

seq1  CTGAAAGCAGGTGGAGGAGGAGCCATTTGTTAGATGTGTAATTGGGAGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGGTGGAGGAGGAGCCATTTGTTAGATGTGTAATTGGGAGAT  547

seq1  GGGTGCTTCTTGATTTATAGTTAGTCATCAAAACCATAGTCATCGGTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTCTTGATTTATAGTTAGTCATCAAAACCATAGTCATCGGTGAG  597

seq1  AGGTAGGATTGCTCACTGGTATTCTGAGAAACCTAATGGTCAAAGTTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGATTGCTCACTGGTATTCTGAGAAACCTAATGGTCAAAGTTGCA  647

seq1  AGAGTTGAAGGAGGGATGTACCAAGATGTGAGAGCAAAGACCTGTAGACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAAGGAGGGATGTACCAAGATGTGAGAGCAAAGACCTGTAGACT  697

seq1  GTGGAGAAAGTGCAAAGAGTGTACAGCGGAGGAAGCAAAGGGAAGCCTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAAGTGCAAAGAGTGTACAGCGGAGGAAGCAAAGGGAAGCCTCC  747

seq1  CTGTTAGACAGGCAGGAGTCATGCAATGTCCTTAGATCAGGCTGGTAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGACAGGCAGGAGTCATGCAATGTCCTTAGATCAGGCTGGTAAAT  797

seq1  GCCCTAAGTGACATCAGCAGAGCTAGAGTAGCTTGGCAGACAGTGACTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAGTGACATCAGCAGAGCTAGAGTAGCTTGGCAGACAGTGACTAT  847

seq1  GCAGTCAGCATAGGAATTGACTTTCTCTACATCCCATTGGATTCTGGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAGCATAGGAATTGACTTTCTCTACATCCCATTGGATTCTGGGAG  897

seq1  CAGTTCTACTATTACAGTCAACAACAACGGTGGCACATATTTCAGGAAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTACTATTACAGTCAACAACAACGGTGGCACATATTTCAGGAAGC  947

seq1  ATTCTCTATTTCAGAACAGTGTTTAATAGAATTGGAATTGTAACTGTCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTATTTCAGAACAGTGTTTAATAGAATTGGAATTGTAACTGTCTC  997

seq1  AGTACATAACAGACTCTCATACTAGCTGTAGAATTC  1033
      ||||||||||||||||||||||||||||||||||||
seq2  AGTACATAACAGACTCTCATACTAGCTGTAGAATTC  1033


seq1: chr18_45128538_45129176
seq2: B6Ng01-252A13.g_69_707

seq1  GAATTCCATTTGAAATAACATCTGTATGAAACATAGCCTTATCTGCTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTGAAATAACATCTGTATGAAACATAGCCTTATCTGCTGTT  50

seq1  GGGCTGGGGAATGAAGGGGTGATATGGATCTCACCTGTATGTTTAGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGAATGAAGGGGTGATATGGATCTCACCTGTATGTTTAGTGCT  100

seq1  TTAGTAAGGCCTGTTTCCTGCTTCCTGTTCTTGTTGCTCTTCCTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGGCCTGTTTCCTGCTTCCTGTTCTTGTTGCTCTTCCTCCCTCC  150

seq1  CATCCTCCTCCCCTCCGCTCTCCTCCCTCCTCCTCTTCCTCCATCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTCCCCTCCGCTCTCCTCCCTCCTCCTCTTCCTCCATCTTTTC  200

seq1  CTCCTTTTTCTTCTTCACCTTTTAGTTCAAAAGAGGAAGCAGGGCCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTTCTTCTTCACCTTTTAGTTCAAAAGAGGAAGCAGGGCCTGGG  250

seq1  GTCAGAGTATGGTCTCTGGATCTAGATGAGATGTGCTTGAATTCCAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTATGGTCTCTGGATCTAGATGAGATGTGCTTGAATTCCAGCAC  300

seq1  TGTTGGGTATCTTTATCATTTTGAGTAAGTTCTTTAATCTCTCTTCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTATCTTTATCATTTTGAGTAAGTTCTTTAATCTCTCTTCATTT  350

seq1  CACTTTTACCATCCATAGATTTTTTAAACTAATAATAACCCACATCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTACCATCCATAGATTTTTTAAACTAATAATAACCCACATCTTAA  400

seq1  AGTTATTTTAAATTAATGTTTTACAGGTTGGGTATGGTGATATATGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTAAATTAATGTTTTACAGGTTGGGTATGGTGATATATGCCTG  450

seq1  TGATCTCAGTACTCCATAGGCAAAGGCAGGAGGAACAAGAGTTTGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCAGTACTCCATAGGCAAAGGCAGGAGGAACAAGAGTTTGAGGCA  500

seq1  ACCCTAAGATACTACTAGCAAGACCCTCTCTTAGAAACAACCAAAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAGATACTACTAGCAAGACCCTCTCTTAGAAACAACCAAAGGAAA  550

seq1  GAGAACAGAGGGTGTAGTTCATGTAAATACATAAAGTAGTGGATTTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGAGGGTGTAGTTCATGTAAATACATAAAGTAGTGGATTTTTTT  600

seq1  GTTTGTTTGTTTGTGGTTGGTTAGTTGGTTTTTTGTTTT  639
      |||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTGGTTGGTTAGTTGGTTTTTTGTTTT  639


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