BAC Information

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BAC

Clone NameB6Ng01-252E06
Chromosome18 (Build37)
Map Location 36,924,439 - 37,120,356
singlet/doubletdoublet
Overlap geneDnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5
Upstream geneLOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55
Downstream genePcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252E06.bB6Ng01-252E06.g
ACCGA059307GA059308
length1,096850
definitionB6Ng01-252E06.b B6Ng01-252E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,119,265 - 37,120,356)(36,924,439 - 36,925,288)
sequence
gaattcacaaacaaaatgccattctgcagatttccctccagaaggtcccc
gcggtccttggacgccactctgaacaggcggggcaccagctccgtcagct
ccagccccaggtcctgcgcgatgcggcccacgaaggtgccgtgtttggcc
tcctcggggatggagtagtggagctggccgctccctgcctcccaggctgc
gagaagcacaaaggagatcagcaggcgccgaaatcccggacttcctccct
ggaaatataccatcacaatcttgttccacttctccagtctctattgcagc
accacacaaagtcctttgacaacttagttccaatttacaatagatttgat
ttccttgctttttgtgagcttctgtagcagatccaaaaatggaagatcct
tttcctaagtaaaatgtactactctccgtatccttttttgacgttggaag
ctaaaaatgtctcttgtggtgtctagcgacaccatgtggataaaagggta
agtatttttctttgttttattttattcacttaagcttttattttgaaatt
atttcgcccaatactcaatgtccattacatgtttttatgcttcggtgtat
ttcgcctctccgttccctgattgcatgtaacctcattaacccttctccta
aatagttgcttgacttaccaactgcactagatgctctgcaggtgatctcg
agacagtagctcactgggacaacacagtcggagggaggaccgcatatgag
cgtacccctgcataaggatcaatctgcaggactccccccaaaagattgtg
cccaattatctatcctcagatccatcttcaaactgatcaaataacttata
ttgaatattttggtggcagtattctgttgttcactagtatcctttccata
cttagctatagcctaatttttttagtttgcctatattaacctaatgaaca
tgaaatttcctggggattattgaaacaaaaattcctagatttatgtttat
tactggcgatttgtttatgattgattctatctccaaaaagaatttaatac
gcttaaatattctacttcagggtcccttttttgaatccttcccaaa
gaattcacctttaatcccagcaattgagaggcacagttaggtatatcatt
gagtttgacaccagcctaatttacaaagttaagtccaggacagcctgggc
tattacaaagagaaacccggtctcggaaaaaacgaactaacaaacaaaca
aaaaaccacccaaaactagtaagacaagtgacttaaatataggtaagtag
tggtagtagcattaatatggcagtagttcaggaactccacttgtgcctga
ctatagatttgggggtatgttgttaagtagccagccacccttccgcacct
tccacccctaccttctaccagggcctttttgggcatagcaccagctcggt
gcgtactgaacttgagcagcgcaatctgagagggcgcagacccagggctg
ggtagcagcagtgtctcctggaggcagggaccgaacggttgcagggcgag
cagtaacgctcggcggtttaagctaagaggcagcccgtccaccgtcagct
cgcacttctcggtgcttcggcacaccaggagctggcaagaaggccgcagc
tggtggttgtgcagcgtagcaatggcggcctgtgcaccgcgccgcgagct
gtagcgcgcataggcaaagccgcggttcaaaccactgaaggtcatcatta
ggcggaactcatagaggcgccccacgcgctggaagagtgggattagctgg
tgctcggacacgtcctgcggaaatcttccgatatacatctcggaccctga
cggtggcgggctgcccacccagcctggagggaaggattttgttggttact
gtggtccacaaggatgtactttaagctccaggacagactcgggggggggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37119265_37120356
seq2: B6Ng01-252E06.b_43_1138 (reverse)

seq1  TTTGGGAA-GATTTCAAAAAGGGA-CCTGAAGTTAGAATATTTAAACTGT  48
      |||||||| ||||  ||||||||| ||||||| |||||||||||| |   
seq2  TTTGGGAAGGATTCAAAAAAGGGACCCTGAAG-TAGAATATTTAAGCGTA  49

seq1  TTGAATTCTTTTTGAAGATAGAATCAATCAATAAACAAATCGCCAGTAAT  98
      || ||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTAAATTCTTTTTGGAGATAGAATCAATC-ATAAACAAATCGCCAGTAAT  98

seq1  AAACATTAAATCTA-GAATATTTTGTTCAATAATACCCAGGAAA-TTCAT  146
      ||||| |||||||| |||| |||  ||||||||| ||||||||| |||||
seq2  AAACA-TAAATCTAGGAATTTTTGTTTCAATAATCCCCAGGAAATTTCAT  147

seq1  GTTCATTAGGTTAATATAGACAAACTAAAAAAATTAGGCTATAGCTAAGT  196
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTCATTAGGTTAATATAGGCAAACTAAAAAAATTAGGCTATAGCTAAGT  197

seq1  ATGGAAAGGATACTAGTGAACAACAGAA-ACTGTTGAAAAAATAACCAAT  245
      |||||||||||||||||||||||||||| ||||     ||||||  ||||
seq2  ATGGAAAGGATACTAGTGAACAACAGAATACTGCCACCAAAATATTCAAT  247

seq1  GGAAGTTATTTCATCAGTTTGAATATAAATCTGTCTATAAATAAATGGAC  295
        ||||||||| ||||||||||| ||  |||||   ||| |||| ||| |
seq2  ATAAGTTATTTGATCAGTTTGAAGATGGATCTGAGGATAGATAATTGGGC  297

seq1  AAAATC-TTTGGGGTGTCTACTGAAGATTTATCCATATGCAGTGGTATGC  344
      | |||| ||||||| |  | ||| ||||| |||| ||||||| |||| ||
seq2  ACAATCTTTTGGGGGGAGTCCTGCAGATTGATCCTTATGCAGGGGTACGC  347

seq1  TCATATGCTGTTTTACTTTAGATTGTGTTTATAAAGTTAGGTCCAGTCCG  394
      |||||||| ||  | | |  || ||||||     ||| || | | |||  
seq2  TCATATGCGGTCCTCCCTCCGACTGTGTTGTCCCAGTGAGCTACTGTCTC  397

seq1  GAGATCACCTGCAGAGCATCTAGTG-GGTTGGTAAGTCAAGCAACTAAAT  443
      |||||||||||||||||||||||||  ||||||||||||||||||||  |
seq2  GAGATCACCTGCAGAGCATCTAGTGCAGTTGGTAAGTCAAGCAACTATTT  447

seq1  AGGAGACTGGTTAAAGAGGTGACATCTAATTAGAGAACAGAGAGCAGAAA  493
      ||||||  |||||| ||||| ||||  ||| || |||| |||||  ||||
seq2  AGGAGAAGGGTTAATGAGGTTACATGCAATCAGGGAACGGAGAGGCGAAA  497

seq1  TATACAGAAGCATAAAAACATGTAATTGAAATTGAGTATTATTGAGAAAT  543
      || || |||||||||||||||||||| || ||||||||||   | |||||
seq2  TACACCGAAGCATAAAAACATGTAATGGACATTGAGTATT-GGGCGAAAT  546

seq1  AATTTCAAAATAAAAG-GTAAGTGAATAAAATAAAACAAAGAAAAATACT  592
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  AATTTCAAAATAAAAGCTTAAGTGAATAAAATAAAACAAAGAAAAATACT  596

seq1  TACCCTTTTATCCACATGGTGTCGCTAGACACCACAAGATACATTTTTAG  642
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACCCTTTTATCCACATGGTGTCGCTAGACACCACAAGAGACATTTTTAG  646

seq1  CTTCCAACGTCAAAAAAGGATACGGAGAGTAGTACATTTTACTTAGGAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACGTCAAAAAAGGATACGGAGAGTAGTACATTTTACTTAGGAAA  696

seq1  AGGATCTTCCATTTTTGGATCTGCTACAGAAGCTCACAAAAAGCAAGGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTCCATTTTTGGATCTGCTACAGAAGCTCACAAAAAGCAAGGAA  746

seq1  ATCAAATCTATTGTAAATTGGAACTAAGTTGTCAAAGGACTTTGTGTGGT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTATTGTAAATTGGAACTAAGTTGTCAAAGGACTTTGTGTGGT  796

seq1  GCTGCAATAGAGACTGGAGAAGTGGAACAAGATTGCGATGGTATATTTCC  842
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTGCAATAGAGACTGGAGAAGTGGAACAAGATTGTGATGGTATATTTCC  846

seq1  AGCGAGGAAGTCCGGGATTTCGGCGCCTGCTGATCTCCTTTGTGCTTCTC  892
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAAGTCCGGGATTTCGGCGCCTGCTGATCTCCTTTGTGCTTCTC  896

seq1  GCAGCCTGGGAGGCAGGGAGCGGCCAGCTCCACTACTCCATCCCCGAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGGGAGGCAGGGAGCGGCCAGCTCCACTACTCCATCCCCGAGGA  946

seq1  GGCCAAACACGGCACCTTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAACACGGCACCTTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGG  996

seq1  AGCTGACGGAGCTGGTGCCCCGCCTGTTCAGAGTGGCGTCCAAGGACCGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACGGAGCTGGTGCCCCGCCTGTTCAGAGTGGCGTCCAAGGACCGC  1046

seq1  GGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTC  1092
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGGACCTTCTGGAGGGAAATCTGCAGAATGGCATTTTGTTTGTGAATTC  1096

seq1: chr18_36924439_36925288
seq2: B6Ng01-252E06.g_67_916

seq1  GAATTCACCTTTAATCCCAGCAATTGAGAGGCACAGTTAGGTATATCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTTAATCCCAGCAATTGAGAGGCACAGTTAGGTATATCATT  50

seq1  GAGTTTGACACCAGCCTAATTTACAAAGTTAAGTCCAGGACAGCCTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGACACCAGCCTAATTTACAAAGTTAAGTCCAGGACAGCCTGGGC  100

seq1  TATTACAAAGAGAAACCCGGTCTCGGAAAAAACGAACTAACAAACAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAAGAGAAACCCGGTCTCGGAAAAAACGAACTAACAAACAAACA  150

seq1  AAAAACCACCCAAAACTAGTAAGACAAGTGACTTAAATATAGGTAAGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCACCCAAAACTAGTAAGACAAGTGACTTAAATATAGGTAAGTAG  200

seq1  TGGTAGTAGCATTAATATGGCAGTAGTTCAGGAACTCCACTTGTGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTAGCATTAATATGGCAGTAGTTCAGGAACTCCACTTGTGCCTGA  250

seq1  CTATAGATTTGGGGGTATGTTGTTAAGTAGCCAGCCACCCTTCCGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATTTGGGGGTATGTTGTTAAGTAGCCAGCCACCCTTCCGCACCT  300

seq1  TCCACCCCTACCTTCTACCAGGGCCTTTTTGGCCATAGCAGCAGCTCGGT  350
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TCCACCCCTACCTTCTACCAGGGCCTTTTTGGGCATAGCACCAGCTCGGT  350

seq1  GCGTACTGAACTTGAGCAGCGCAATCTGAGAGGGCGCAGACCCAGGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACTGAACTTGAGCAGCGCAATCTGAGAGGGCGCAGACCCAGGGCTG  400

seq1  GGTAGCAGCAGTGTCTCCTGGAGGCAGGGACCGAACGGTTGCAGGGCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAGCAGTGTCTCCTGGAGGCAGGGACCGAACGGTTGCAGGGCGAG  450

seq1  CAGTAACGCTCGGCGGTTTAAGCTAAGAGGCAGCCCGTCCACCGTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACGCTCGGCGGTTTAAGCTAAGAGGCAGCCCGTCCACCGTCAGCT  500

seq1  CGCACTTCTCGGTGCTTCGGCACACCAGGAGCTGGCAAGAAGGCCGCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTCTCGGTGCTTCGGCACACCAGGAGCTGGCAAGAAGGCCGCAGC  550

seq1  TGGTGGTTGTGCAGCGTAGCAATGGCGGCCTGGGCACCGCGCCGCGAGCT  600
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGTGGTTGTGCAGCGTAGCAATGGCGGCCTGTGCACCGCGCCGCGAGCT  600

seq1  GTAGCGCGCATAGGCAAAGCCGCGGTTCAAACCACTGAAGGTCATCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGCGCATAGGCAAAGCCGCGGTTCAAACCACTGAAGGTCATCATTA  650

seq1  GGCGGAACTCATAGAGGCGCCCCACGCGCTGGAAGAGTGGGATTAGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAACTCATAGAGGCGCCCCACGCGCTGGAAGAGTGGGATTAGCTGG  700

seq1  TGCTCGTACACGTCCTGCGGAAGTCGTCCGATATACACCTCGGACCCTGA  750
      |||||| ||||||||||||||| || ||||||||||| ||||||||||||
seq2  TGCTCGGACACGTCCTGCGGAAATCTTCCGATATACATCTCGGACCCTGA  750

seq1  CGGTGGCGGGCTGCCCACCCAGCCTGGAGGGAAAGGATTTTGTTGGTTAC  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGTGGCGGGCTGCCCACCCAGCCTGGAGGG-AAGGATTTTGTTGGTTAC  799

seq1  TGTGGTCCACAAGGATGT-TTTTAAGCTCCAGGATAAAGCTGGGGGGGGG  849
      ||||||||||||||||||  |||||||||||||| | |   |||||||||
seq2  TGTGGTCCACAAGGATGTACTTTAAGCTCCAGGACAGACTCGGGGGGGGG  849

seq1  G  850
      |
seq2  G  850