BAC Information

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BAC

Clone NameB6Ng01-252E08
Chromosome18 (Build37)
Map Location 69,558,112 - 69,691,866
singlet/doubletdoublet
Overlap geneTcf4
Upstream geneMc2r, LOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252E08.bB6Ng01-252E08.g
ACCGA059311GA059312
length1,1441,106
definitionB6Ng01-252E08.b B6Ng01-252E08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,558,112 - 69,559,274)(69,690,745 - 69,691,866)
sequence
gaattcactattaagaggaaatccaatttttgaagtaatacactggggca
agtctaagtatttgatgacatataattttaggccattcatctctaagtct
catgattagtgagtttaggattattatagcagtaaaataggagtgctgta
tacaagtgaactggctatattagtagactaattatcctaatgtatttgca
tatgatttacatgtatgcatttatagttccatgtttgtcttcatatgtgt
caaaactgtggttttgaaagctttaattcattttgagatctttgttggaa
ctcctaacgttactttaaattactttcctacctccattctctggttatgt
atggtgggacttctttgtctatggcaaacctagtgtgaagtaccagggat
ctagagattaacaagccccagacttcgcactcagggctggatgcaaataa
gttactctctggtgggagttggatcaaagcagaaacccttgtcctgagag
catgcccattcagcttcagaggagccctggtaccaagagtgtggccattc
agcttcatagtgtagctcccaaaagctcaccagggaacgccatttacaat
ctagacaaaaattccatacagtgtttctttctacacttccaacagcctta
gtttttattagttctaattgcctaacatttcagtcaagggggaaaaaaaa
acatgcagataaatttgaaacaatgtcttctatgtgagtaactttataaa
agtatcttttttttaattacttcattttcctcctggcttttaaatatact
taaaaatatttttaaccgtatctaatttttgcaacttctaaacaactttc
taagcagtcacctcctgaccccctttttcccccttccctacttccccctc
ctggggccacctccctttctttagagcccccgcataatgctattccttta
cagtccagccatctgcctggtttagcctcttcttcactctccctgtttct
tctatatagatttcccatatgtctgcttctcctttatccacagtcagaca
ctcctcatagctttcttacaacccatctgtgtccgtctgtcataattact
cttcatcgctggatcccagccccactcgttctaaagagtgcgga

gaattctgtattcctgggagggaaccatgaacagggcagaaaatatccta
atagaatgaagatttgcctaaaaaaatctcatggtagcgggtaatcccaa
gcggaaccaaatgaagactgattttaagtaatcttactactgggggggga
aatgatttaaatgtgcaactgtgtttagccagggatgcttatcaatattt
gatttttctgacctctgccatagtgctcttaggaagcattcactttccga
cggcctagaagaatctatcccctgagcctatgctctccttggagaaagaa
tataccacccccttgagcagcccgttcccttacaatcatctggagtaata
cagaaaggttttgctaaaaaactgtaaggcataacttgtttacccatctt
gacattttctgtataatttgtatattgcctttgcattctgttttctatga
taatttgagactcatttataaacttccttcttgattaaactttcttttta
attaactcaccataatattggcaatacccgctgacacaaagacctagata
ggcggttcacatacattaagtgagccataggtattttaatcactattatt
ttaaaactttggttttgttttactattttatatcacaataactcatcaaa
atttactctaaaatagtctagacttctcttagacagttagaaaagcttta
tgaaactcgataccaaagcaaggtatagactctactctctaatgacagta
gcacagactaccaatcacacggctgaatatagcttgtttggttggtttat
tattctttgaaagtataatgtctgcatgctatgcatctttatcacgtgta
gacctcggtcgcttctcctctaccacttccctaagtccttgagtcagagt
tccctcacaacactgtaccctttcttattttcattttttaccctaattag
ttctgcctctatggaatactgggggtggtggctattcactagcatgagga
cctacagcagccacactgatgagaaatgtcaaaaatgttctcttttgata
atatggtcagcgggcagtggttggagcatgcctttactcagcactgggag
gcagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69558112_69559274
seq2: B6Ng01-252E08.b_42_1185

seq1  GAATTCACTATTAAGAGGAAATCCAATTTTTGAAGTAATACACTGGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTAAGAGGAAATCCAATTTTTGAAGTAATACACTGGGGCA  50

seq1  AGTCTAAGTATTTGATGACATATAATTTTAGGCCATTCATCTCTAAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGTATTTGATGACATATAATTTTAGGCCATTCATCTCTAAGTCT  100

seq1  CATGATTAGTGAGTTTAGGATTATTATAGCAGTAAAATAGGAGTGCTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTAGTGAGTTTAGGATTATTATAGCAGTAAAATAGGAGTGCTGTA  150

seq1  TACAAGTGAACTGGCTATATTAGTAGACTAATTATCCTAATGTATTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTGAACTGGCTATATTAGTAGACTAATTATCCTAATGTATTTGCA  200

seq1  TATGATTTACATGTATGCATTTATAGTTCCATGTTTGTCTTCATATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTACATGTATGCATTTATAGTTCCATGTTTGTCTTCATATGTGT  250

seq1  CAAAACTGTGGTTTTGAAAGCTTTAATTCATTTTGAGATCTTTGTTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGTGGTTTTGAAAGCTTTAATTCATTTTGAGATCTTTGTTGGAA  300

seq1  CTCCTAACGTTACTTTAAATTACTTTCCTACCTCCATTCTCTGGTTATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACGTTACTTTAAATTACTTTCCTACCTCCATTCTCTGGTTATGT  350

seq1  ATGGTGGGACTTCTTTGTCTATGGCAAACCTAGTGTGAAGTACCAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGACTTCTTTGTCTATGGCAAACCTAGTGTGAAGTACCAGGGAT  400

seq1  CTAGAGATTAACAAGCCCCAGACTTCGCACTCAGGGCTGGATGCAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATTAACAAGCCCCAGACTTCGCACTCAGGGCTGGATGCAAATAA  450

seq1  GTTACTCTCTGGTGGGAGTTGGATCAAAGCAGAAACCCTTGTCCTGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCTCTGGTGGGAGTTGGATCAAAGCAGAAACCCTTGTCCTGAGAG  500

seq1  CATGCCCATTCAGCTTCAGAGGAGCCCTGGTACCAAGAGTGTGGCCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCATTCAGCTTCAGAGGAGCCCTGGTACCAAGAGTGTGGCCATTC  550

seq1  AGCTTCATAGTGTAGCTCCCAAAAGCTCACCAGGGAACGCCATTTACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATAGTGTAGCTCCCAAAAGCTCACCAGGGAACGCCATTTACAAT  600

seq1  CTAGACAAAAATTCCATACAGTGTTTCTTTCTACACTTCCAACAGCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAAAAATTCCATACAGTGTTTCTTTCTACACTTCCAACAGCCTTA  650

seq1  GTTTTTATTAGTTCTAATTGCCTAACATTTCAGTCAAGGGGGAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTAGTTCTAATTGCCTAACATTTCAGTCAAGGGGGAAAAAAAA  700

seq1  ACATGCAGATAAATTTGAAACAATGTCTTCTATGTGAGTAACTTTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGATAAATTTGAAACAATGTCTTCTATGTGAGTAACTTTATAAA  750

seq1  AGTATCTTTTTTTTAATTACTTCATTTTCCTCCTGGCTTTTAAATATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTTTTTTTTAATTACTTCATTTTCCTCCTGGCTTTTAAATATACT  800

seq1  TAAAAATATTTTTAACCGTATCTAATTTTTGCAACTTCTAAACAACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTTTAACCGTATCTAATTTTTGCAACTTCTAAACAACTTTC  850

seq1  TAAGCAGTCACCTCCTGACCCCCTTTTTCCCCCTTCCCTACTTCCCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTCACCTCCTGACCCCCTTTTTCCCCCTTCCCTACTTCCCCCTC  900

seq1  CTGGGGCCACCTCCCTTTCTTTAGAGCCCCCGCATAATGCTATTCCTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCACCTCCCTTTCTTTAGAGCCCCCGCATAATGCTATTCCTTTA  950

seq1  CAGTCCAGCCATCTGCCTGGTTTAGCCTCTTCTTCACTCTCCCTGTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAGCCATCTGCCTGGTTTAGCCTCTTCTTCACTCTCCCTGTTTCT  1000

seq1  TCTATATAGATTTCCCCATATGTCTGCTTCCTCCTTTATCCACAAGTCCA  1050
      ||||||||||||| ||||||||||||||| ||||||||||||| ||| ||
seq2  TCTATATAGATTT-CCCATATGTCTGCTT-CTCCTTTATCCAC-AGT-CA  1046

seq1  GACACTCCTCCATAGCTTTCTTACCACCCCATCCTGGTGTCCCGTCTGTT  1100
      ||||||||| ||||||||||||| || ||||||   |||| ||||||| |
seq2  GACACTCCT-CATAGCTTTCTTA-CAACCCATC--TGTGT-CCGTCTG-T  1090

seq1  CATAAATAACTCTTTCATCCGCTTTGGATCCCCAGCCCCCACTCGTTCTA  1150
      ||| ||| |||| ||||| |||  ||||| ||||| ||||||||||||| 
seq2  CAT-AATTACTC-TTCAT-CGC--TGGAT-CCCAG-CCCCACTCGTTCT-  1132

seq1  AAAAGAGTGCGGA  1163
       ||||||||||||
seq2  -AAAGAGTGCGGA  1144


seq1: chr18_69690745_69691866
seq2: B6Ng01-252E08.g_65_1170 (reverse)

seq1  CTCTGCCTCCCAAGTGCTGGGGTTAAAGGCATGCTCC-ACCACTGCCCGG  49
      ||||||||||| ||||||| |  |||||||||||||| |||||||||| |
seq2  CTCTGCCTCCC-AGTGCTGAG--TAAAGGCATGCTCCAACCACTGCCC-G  46

seq1  CTGACCAATAATTTTTATACAAAAGAGGAACATTTTGTGACATTTTCCTT  99
      |||||||     | |||| ||||||| ||||||||| ||||||||    |
seq2  CTGACCA-----TATTAT-CAAAAGA-GAACATTTT-TGACATTT---CT  85

seq1  CATCAGTGTGGCTGCTGGTAGGTTCTTCATGCCTAGGTGAATAGCCACCA  149
      |||||||||||||||| ||||| || ||||| ||| ||||||||||||||
seq2  CATCAGTGTGGCTGCT-GTAGG-TCCTCATG-CTA-GTGAATAGCCACCA  131

seq1  -CCCCAGTA-TCCATAGAGGCAGAACTAATTAGGGTAAAAAATGAAAATA  197
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTATTCCATAGAGGCAGAACTAATTAGGGTAAAAAATGAAAATA  181

seq1  AGAAAGGGTACAGTGTTGTGAGGGAACTCTGACTCAAGGACTTAGGGAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTACAGTGTTGTGAGGGAACTCTGACTCAAGGACTTAGGGAAG  231

seq1  TGGTAGAGGAGAAGCGACCGAGGTCTACACGTGATAAAGATGCATAGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGAGGAGAAGCGACCGAGGTCTACACGTGATAAAGATGCATAGCAT  281

seq1  GCAGACATTATACTTTCAAAGAATAATAAACCAACCAAACAAGCTATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATTATACTTTCAAAGAATAATAAACCAACCAAACAAGCTATATT  331

seq1  CAGCCGTGTGATTGGTAGTCTGTGCTACTGTCATTAGAGAGTAGAGTCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGTGTGATTGGTAGTCTGTGCTACTGTCATTAGAGAGTAGAGTCTA  381

seq1  TACCTTGCTTTGGTATCGAGTTTCATAAAGCTTTTCTAACTGTCTAAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCTTTGGTATCGAGTTTCATAAAGCTTTTCTAACTGTCTAAGAG  431

seq1  AAGTCTAGACTATTTTAGAGTAAATTTTGATGAGTTATTGTGATATAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAGACTATTTTAGAGTAAATTTTGATGAGTTATTGTGATATAAAA  481

seq1  TAGTAAAACAAAACCAAAGTTTTAAAATAATAGTGATTAAAATACCTATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAACAAAACCAAAGTTTTAAAATAATAGTGATTAAAATACCTATG  531

seq1  GCTCACTTAATGTATGTGAACCGCCTATCTAGGTCTTTGTGTCAGCGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTTAATGTATGTGAACCGCCTATCTAGGTCTTTGTGTCAGCGGGT  581

seq1  ATTGCCAATATTATGGTGAGTTAATTAAAAAGAAAGTTTAATCAAGAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAATATTATGGTGAGTTAATTAAAAAGAAAGTTTAATCAAGAAGG  631

seq1  AAGTTTATAAATGAGTCTCAAATTATCATAGAAAACAGAATGCAAAGGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAAATGAGTCTCAAATTATCATAGAAAACAGAATGCAAAGGCA  681

seq1  ATATACAAATTATACAGAAAATGTCAAGATGGGTAAACAAGTTATGCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAATTATACAGAAAATGTCAAGATGGGTAAACAAGTTATGCCTT  731

seq1  ACAGTTTTTTAGCAAAACCTTTCTGTATTACTCCAGATGATTGTAAGGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTTTAGCAAAACCTTTCTGTATTACTCCAGATGATTGTAAGGGA  781

seq1  ACGGGCTGCTCAAGGGGGTGGTATATTCTTTCTCCAAGGAGAGCATAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTGCTCAAGGGGGTGGTATATTCTTTCTCCAAGGAGAGCATAGGC  831

seq1  TCAGGGGATAGATTCTTCTAGGCCGTCGGAAAGTGAATGCTTCCTAAGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGATAGATTCTTCTAGGCCGTCGGAAAGTGAATGCTTCCTAAGAG  881

seq1  CACTATGGCAGAGGTCAGAAAAATCAAATATTGATAAGCATCCCTGGCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGGCAGAGGTCAGAAAAATCAAATATTGATAAGCATCCCTGGCTA  931

seq1  AACACAGTTGCACATTTAAATCATTTCCCCCCCCAGTAGTAAGATTACTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTTGCACATTTAAATCATTTCCCCCCCCAGTAGTAAGATTACTT  981

seq1  AAAATCAGTCTTCATTTGGTTCCGCTTGGGATTACCCGCTACCATGAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTCTTCATTTGGTTCCGCTTGGGATTACCCGCTACCATGAGAT  1031

seq1  TTTTTTAGGCAAATCTTCATTCTATTAGGATATTTTCTGCCCTGTTCATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGGCAAATCTTCATTCTATTAGGATATTTTCTGCCCTGTTCATG  1081

seq1  GTTCCCTCCCAGGAATACAGAATTC  1122
      |||||||||||||||||||||||||
seq2  GTTCCCTCCCAGGAATACAGAATTC  1106


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