BAC Information

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BAC

Clone NameB6Ng01-252H14
Chromosome18 (Build37)
Map Location 31,118,175 - 31,119,295
singlet/doubletsinglet
Overlap genenone
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252H14.bB6Ng01-252H14.g
ACCGA059460GA059461
length1,1261,200
definitionB6Ng01-252H14.b B6Ng01-252H14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatttatatttttttataatgaaggaaacaaagcttagaaga
atataattttttgtgaacaaaatttctattattaatcttaattttttcaa
gtattttctctttcccaattctcacattcctatttttttaaagtgagata
acatcgtaaaagagatgtttgtgctagtctgcatgtctaactctgttgaa
ctttgactcatttctttagccagaggagaaaatgtgaatgatcagagatg
ttgtttcaggacttttcctgggatggattttgaacatgctaggctgctcc
cagccctgccaaaatgctgaggaggattctgctgcagactgcacagcctc
tcagctgtgtcagcagcagctgctctccctggcaacaccgtgaaggcctt
cacgggtcactgttaaggaagaagtgccaaatggattggggatggatgac
tgaggactgcaaaagtctcctgcttcatggcagcatgcacaaactgtggc
tgttgttattacttttggagaattttcaaaatgctgtgctaaatagccca
tgagaaagagaattagcactgaatcaccacgagtaactgattctgaacca
gccagacatgggggctgaagatgtccctctcatgcatcaccatggacctt
ctttcttgatcacttggctcgttgattctgttctcgtcatttaaccattg
gcttagctgcatccctttgctttaaatccttcccccatcaagtcaatttt
acacaatattgcctagttctggaagggttccattttccttcaaaataaaa
tcccaattttcttggcattgtatgtaaggcttgtcttgggatattgactc
ttccaagtgctagctcagcctttccctttaagtgcccacttgatacacaa
acttaccagcctttgcaatcttggtcaaccctgcagtcattagagcataa
tgcctaagtgaataatttacaaaaaagaaagtgggttgttgttgtgattg
tagtagtttgctgtttagttcacagtttgtgaaattcctatctaacagtg
gccaaccttcttggctttggctctcggtgggcatgctataacactggcca
ggtaggatcgaatggacttttatttt
gaattctccacactgatttccatagtggctggactagtatggtccccttt
cccttttctccacaacctctccagcatttcttcttggttgtttcttagat
ctctgcccttctcattcggttaggatgaaatctcaacatttcttttgatt
tacatttctgtaattcctaggtgcaatgtggtcttttttttgtttgtttg
tttgttttaatttcttagccaatttcttttatgcagtctcttttatatct
caggtactttctagaattgtggtgtttgttattcagcatttttagttcat
tttctgtattctacatattagtcctctgtcagatgtgtaactggaaaaga
ttttctcccattctgtgggcttctgtaccaggttgattgtttccttagct
gtaacaattgttttgtttatttgtttgtttgttttttaatgtagtcacac
ttattaattgttggctgtaattcttgggcaaatagagtcctatccagaag
gtccttgcctacacacatatcacgtagagtactgcctacacatataccac
agggttcttcccatgcttctattaactgtttcatctttcactttttgttc
tttggtttatcaggagttagtttttgtgcaaagttatagaatggttataa
tttcatttttttttctgcatgggatttcagatttcctagcaccacttttt
ttaaagatacttttccctccagcttgtgattttgatatctttatcaaata
ttaagttgctgaagttctatgcacccatgtttgggtgtttgattttgtga
cattggtagagatacccctttcaatgccataccatattgttttaataagt
atggctctgcaatgtatcttaagtcttggaatgaaaatccatccaacact
gtccctttttatcaggatttttgactatttgtaattattataattataaa
tgtatataataatttaataatcatatatttataatcatataatgtatttt
aatatactctttctgtgagatgagatgagatcttgaatgggaaatgcatg
aaatagctttggtaaatggtcattttacaaatatattctatccacacaat
ggagcatgggatggttccaatttctaatgcctgttcctgaagattagtta
atgaagcttcactaaccttgattagatctactctatagaaaattgtgctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31118175_31119295
seq2: B6Ng01-252H14.b_47_1172

seq1  GAATTCACTATTTATATTTTTTTATAATGAAGGAAACAAAGCTTAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTATATTTTTTTATAATGAAGGAAACAAAGCTTAGAAGA  50

seq1  ATATAATTTTTTGTGAACAAAATTTCTATTATTAATCTTAATTTTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTTTTTGTGAACAAAATTTCTATTATTAATCTTAATTTTTTCAA  100

seq1  GTATTTTCTCTTTCCCAATTCTCACATTCCTATTTTTTTAAAGTGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCTCTTTCCCAATTCTCACATTCCTATTTTTTTAAAGTGAGATA  150

seq1  ACATCGTAAAAGAGATGTTTGTGCTAGTCTGCATGTCTAACTCTGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCGTAAAAGAGATGTTTGTGCTAGTCTGCATGTCTAACTCTGTTGAA  200

seq1  CTTTGACTCATTTCTTTAGCCAGAGGAGAAAATGTGAATGATCAGAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTCATTTCTTTAGCCAGAGGAGAAAATGTGAATGATCAGAGATG  250

seq1  TTGTTTCAGGACTTTTCCTGGGATGGATTTTGAACATGCTAGGCTGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCAGGACTTTTCCTGGGATGGATTTTGAACATGCTAGGCTGCTCC  300

seq1  CAGCCCTGCCAAAATGCTGAGGAGGATTCTGCTGCAGACTGCACAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGCCAAAATGCTGAGGAGGATTCTGCTGCAGACTGCACAGCCTC  350

seq1  TCAGCTGTGTCAGCAGCAGCTGCTCTCCCTGGCAACACCGTGAAGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGTCAGCAGCAGCTGCTCTCCCTGGCAACACCGTGAAGGCCTT  400

seq1  CACGGGTCACTGTTAAGGAAGAAGTGCCAAATGGATTGGGGATGGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTCACTGTTAAGGAAGAAGTGCCAAATGGATTGGGGATGGATGAC  450

seq1  TGAGGACTGCAAAAGTCTCCTGCTTCATGGCAGCATGCACAAACTGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGCAAAAGTCTCCTGCTTCATGGCAGCATGCACAAACTGTGGC  500

seq1  TGTTGTTATTACTTTTGGAGAATTTTCAAAATGCTGTGCTAAATAGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTATTACTTTTGGAGAATTTTCAAAATGCTGTGCTAAATAGCCCA  550

seq1  TGAGAAAGAGAATTAGCACTGAATCACCACGAGTAACTGATTCTGAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGAGAATTAGCACTGAATCACCACGAGTAACTGATTCTGAACCA  600

seq1  GCCAGACATGGGGGCTGAAGATGTCCCTCTCATGCATCACCATGGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACATGGGGGCTGAAGATGTCCCTCTCATGCATCACCATGGACCTT  650

seq1  CTTTCTTGATCACTTGGCTCGTTGATTCTGTTCTCGTCATTTAACCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATCACTTGGCTCGTTGATTCTGTTCTCGTCATTTAACCATTG  700

seq1  GCTTAGCTGCATCCCTTTGCTTTAAATCCTTCCCCCATCAAGTCAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTGCATCCCTTTGCTTTAAATCCTTCCCCCATCAAGTCAATTTT  750

seq1  ACACAATATTGCCTAGTTCTGGAAGGGTTCCATTTTCCTTCAAAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATATTGCCTAGTTCTGGAAGGGTTCCATTTTCCTTCAAAATAAAA  800

seq1  TCCCAATTTTCTTGGCATTGTATGTAAGGCTTGTCTTGGGATATTGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTTTCTTGGCATTGTATGTAAGGCTTGTCTTGGGATATTGACTC  850

seq1  TTCCAAGTGCTAGCTCAGCCTTTCCCTTTAAGTGCCCACTTGATACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGCTAGCTCAGCCTTTCCCTTTAAGTGCCCACTTGATACACAA  900

seq1  ACTTACCAGCCTTTGCAATCTTGGTCAA-CCTGCAGTCATTAGAGCATAA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACTTACCAGCCTTTGCAATCTTGGTCAACCCTGCAGTCATTAGAGCATAA  950

seq1  TGCCTAAAGTGAATAATTTAC-AAAAAGAAAGTGGGTTGTTGTTGTGATT  998
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCCT-AAGTGAATAATTTACAAAAAAGAAAGTGGGTTGTTGTTGTGATT  999

seq1  GTAGTAG-TTGCTGTTTAGTTCACAGTTTGTGAAATTCCTATCTAACAGT  1047
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGTTTGCTGTTTAGTTCACAGTTTGTGAAATTCCTATCTAACAGT  1049

seq1  TGGCAAACTCTTTGCTTTTGGCTCTCGGTGGGCATGCTTAATAACACT-G  1096
       | ||| ||  |||  ||||||||||||||||||||||  |||||||| |
seq2  GGCCAACCTTCTTGGCTTTGGCTCTCGGTGGGCATGCT--ATAACACTGG  1097

seq1  CCA-GTA-GATCGA--TGACATTTATTTT  1121
      ||| ||| ||||||   ||| ||||||||
seq2  CCAGGTAGGATCGAATGGACTTTTATTTT  1126