BAC Information

Click to search

BAC

Clone NameB6Ng01-252P21
Chromosome18 (Build37)
Map Location 24,114,000 - 24,115,205
singlet/doubletsinglet
Overlap geneLOC100040623, Zfp397
Upstream geneNol4, LOC100040579, LOC665797, Dtna, Mapre2, EG665813
Downstream geneC230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252P21.bB6Ng01-252P21.g
ACCGA059844GA059845
length1,1761,192
definitionB6Ng01-252P21.b B6Ng01-252P21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcactaaattcattcgtaagccaatccttttattaatactggc
tcagaacaaagcccacacaaactaagggcctccatgtttgctgaatattt
cagtatatgaatgggaccaattggcaaatacacaaaattttaaacaaatt
tatgttcagtgcagattttaaaatgttactaccttaaatgcacaccagca
ctacatgctataaacagtaactaaagaaaaaaaaaattagagcttgcatt
aagttctgccaaaagcagggtttggtgctgcatgcctttagtcaaagaac
tgcaggggcaggaaagctctgagctcaaggtcagcctacactacatagca
ggttccaggactacatagaggccctgtcttaaaaacaaacaggaacaatc
tgcagcctgtattttattaaaattttctgtgattggggatgcggccccgt
ggtagaatgcctgtctagcatgaacctgagttcactgtcaaggagtggca
aagatgtagcttactagcaaagtaaaagtgttacctatcattcctaagac
cctgagttcgttcccagcactgagaaaagttcccgtttacagagttagga
atttaatgaggactgaaagataactgaaaaggagataatctcaccatgta
atcatgttaatattgcattcttacacttctaaaattttttctctcagtgg
taggagtttgatatagtaggagatatgactgttagtacttcatcaatata
tttagtcttgaacgtacttactttcaatgttacaagtttttagaggcttt
tttcctatgctgtaagttacaatgctttcatgtattgtaggaaagaagag
gttacacctgggccccgagaggctctggaaactcctccccaagcacaaaa
cccaactgtactaagctttttgtgagctatttcagcccagaatggctgtg
gaatccagagcaatttcaactttaaaacctcaggaccatcagagattata
ctagtgaaaatagaagatagtagcttttcttgagtcagaaatgtaacaga
atggagtgccatcttggcagatatttcgcagcatcaagagtttgcctatc
atgaaactggccgaaggctctggctactcaggaactgcatcatgcctatg
tcgagtgtgcaccacaaaggagcaga
gaattcagtaagaaagttgcctattcagtaactaattaagcattacaaag
gacggagccagagcagctcagggctggtctgcagagtgtttacttgggac
agtagccagtcttacccaaacacaatggcctagcgaataggtggatttac
catgaaagagctatagagtcccactgagatagaaatcttcagtacaggct
acattgcatattagaagcaagttggtgaattcttctgacaaatggagatt
ctccacagatacttaaaagttacaatcatacaagaatttatcagggccca
ggaaataggggggttgtggtattgcattattcatgagaaggtctgctaga
gcagaaccccctggtgctagctttcacaaggctcaaaggagtagcactaa
ttgtgactagggtgtgaaatccttacctgtcattaagctgaccctaggca
ggactgctttatctttactgtaaacatttacctggttcccgtaagtcctt
ttgaagtcatttctttgttttgtgtcaggtaacttcaatgtactttgcct
gctgtgacttcctaccccctttattttctgtattatataagactggtgtt
cactttgtgacaatacattcagattctacacaatctcctgtgtgcatctg
tctgtcattgtccttgcctgactccttgcccatctgcacccagagacccg
tcctacgcagacaagggacccaagggggtctgcagctgcctttaatgcta
gttgtctctccacatattcttaattttaccctttccccatccccctccat
atttaatcttcatattctacattaccaccagtctgtgtctctataacact
acattttaattcctcttgcttagaagatttttctccccagcctggtcctt
tacgagctacctaacctcactattgttctgattgaagcacagatacctaa
agcttaaagttaatacatggaatatttgtcttttggggtctgggttacct
cactcagataactctttttttattctcttatcatttatatgcaaatacat
ttttttacattctgatataatatccaatcggtataaggtacccacatttt
caattatcattcatcagtggatgggaatctaagcctgtaccattctgcta
ttaggaatagagcgagccagtgaattattgtgaagttgacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_24114000_24115205
seq2: B6Ng01-252P21.b_47_1222

seq1  GAATTCCTCACTAAATTCATTCGTAAGCCAATCCTTTTATTAATACTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACTAAATTCATTCGTAAGCCAATCCTTTTATTAATACTGGC  50

seq1  TCAGAACAAAGCCCACACAAACTAAGGGCCTCCATGTTTGCTGAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAAAGCCCACACAAACTAAGGGCCTCCATGTTTGCTGAATATTT  100

seq1  CAGTATATGAATGGGACCAATTGGCAAATACACAAAATTTTAAACAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATATGAATGGGACCAATTGGCAAATACACAAAATTTTAAACAAATT  150

seq1  TATGTTCAGTGCAGATTTTAAAATGTTACTACCTTAAATGCACACCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGTGCAGATTTTAAAATGTTACTACCTTAAATGCACACCAGCA  200

seq1  CTACATGCTATAAACAGTAACTAAAGAAAAAAAAAATTAGAGCTTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCTATAAACAGTAACTAAAGAAAAAAAAAATTAGAGCTTGCATT  250

seq1  AAGTTCTGCCAAAAGCAGGGTTTGGTGCTGCATGCCTTTAGTCAAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGCCAAAAGCAGGGTTTGGTGCTGCATGCCTTTAGTCAAAGAAC  300

seq1  TGCAGGGGCAGGAAAGCTCTGAGCTCAAGGTCAGCCTACACTACATAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGCAGGAAAGCTCTGAGCTCAAGGTCAGCCTACACTACATAGCA  350

seq1  GGTTCCAGGACTACATAGAGGCCCTGTCTTAAAAACAAACAGGAACAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGGACTACATAGAGGCCCTGTCTTAAAAACAAACAGGAACAATC  400

seq1  TGCAGCCTGTATTTTATTAAAATTTTCTGTGATTGGGGATGCGGCCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGTATTTTATTAAAATTTTCTGTGATTGGGGATGCGGCCCCGT  450

seq1  GGTAGAATGCCTGTCTAGCATGAACCTGAGTTCACTGTCAAGGAGTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATGCCTGTCTAGCATGAACCTGAGTTCACTGTCAAGGAGTGGCA  500

seq1  AAGATGTAGCTTACTAGCAAAGTAAAAGTGTTACCTATCATTCCTAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTAGCTTACTAGCAAAGTAAAAGTGTTACCTATCATTCCTAAGAC  550

seq1  CCTGAGTTCGTTCCCAGCACTGAGAAAAGTTCCCGTTTACAGAGTTAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCGTTCCCAGCACTGAGAAAAGTTCCCGTTTACAGAGTTAGGA  600

seq1  ATTTAATGAGGACTGAAAGATAACTGAAAAGGAGATAATCTCACCATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAGGACTGAAAGATAACTGAAAAGGAGATAATCTCACCATGTA  650

seq1  ATCATGTTAATATTGCATTCTTACACTTCTAAAATTTTTTCTCTCAGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTAATATTGCATTCTTACACTTCTAAAATTTTTTCTCTCAGTGG  700

seq1  TAGGAGTTTGATATAGTAGGAGATATGACTGTTAGTACTTCATCAATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTTTGATATAGTAGGAGATATGACTGTTAGTACTTCATCAATATA  750

seq1  TTTAGTCTTGAACGTACTTACTTTCAATGTTACAAGTTTTTAGAGGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCTTGAACGTACTTACTTTCAATGTTACAAGTTTTTAGAGGCTTT  800

seq1  TTTCCTATGCTGTAAGTTACAATGCTTTCATGTATTGTAGGAAAGAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTATGCTGTAAGTTACAATGCTTTCATGTATTGTAGGAAAGAAGAG  850

seq1  GTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACCTGGGCCCCGAGAGGCTCTGGAAACTCCTCCCCAAGCACAAAA  900

seq1  CCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGTACTAAGCTTTTTGTGAGCTATTTCAGCCCAGAATGGCTGTG  950

seq1  GAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATCAAGAAGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||    |||  |
seq2  GAATCCAGAGCAATTTCAACTTTAAAACCTCAGGACCATC----AGAGAT  996

seq1  AATACTAGTGAAAATAGAAGATAGTAGCTTTTCTTGGAGTCAGAAATGTA  1050
       |||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  TATACTAGTGAAAATAGAAGATAGTAGCTTTTCTT-GAGTCAGAAATGT-  1044

seq1  AACAGAATGGGAGTGCCCAATCTTGCCAAGAATTATTTCGCCAGCAATTC  1100
      |||||||| ||||||||  |||||| | |||  ||||||| |||||  ||
seq2  AACAGAAT-GGAGTGCC--ATCTTGGC-AGA--TATTTCG-CAGCA--TC  1085

seq1  AGGAAGTTTTGCTATCATGAAACACCTGGGCCCCGAGAGGCTCTGGGGCG  1150
      | | |||||  |||||||||||   ||||   |||| |||||||  ||| 
seq2  AAG-AGTTTGCCTATCATGAAA---CTGG---CCGA-AGGCTCT--GGCT  1125

seq1  ACTCCAGGAACTTTGCCATCAGTGGCTAATGCCAGAGT-TGCA-CACAAA  1198
      ||| ||||||||    ||||| || || ||| | |||| |||| ||||||
seq2  ACT-CAGGAACT---GCATCA-TGCCT-ATGTC-GAGTGTGCACCACAAA  1168

seq1  GGAGCAGA  1206
      ||||||||
seq2  GGAGCAGA  1176