BAC Information

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BAC

Clone NameB6Ng01-253L09
Chromosome18 (Build37)
Map Location 31,085,673 - 31,250,411
singlet/doubletdoublet
Overlap geneRit2
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253L09.bB6Ng01-253L09.g
ACCGA060370GA060371
length1,161304
definitionB6Ng01-253L09.b B6Ng01-253L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,249,233 - 31,250,411)(31,085,673 - 31,085,976)
sequence
gaattctcttaccttctgtttgcacactgggtcaagtgaatagttagatt
catttcattttgtgctctcattacaggttttgtcaggaaaaatgaattac
cacagagttgcattatgtgatacatttagtgaattatggcagcaggcaaa
ggatggttaaccttctcataactgtatatcctgagtgacgatcctgccct
ttctccctgcctccagaataaaaatttacctcttaattgatacataaatt
tcaagatgataatgcttaaattaaactaatagaatggtagagaatatctc
cctgataagaaaatgactctacataataatttagcttcaatcaaaagtat
gatcccatcatactttactatccaacaaatataaaaattacttcaagatc
tcataaaatagcatttgataaagcttgacatgtctttcgcatgtagaaca
ttttctagggtttttagatatgatggtgcctgcgctataaaagtctaatg
gtagatttctttctttatccacttgcttgttgctcttggctctttcaaaa
tttctccatcaaaaattattagggttatgaatccaataagagagaaagcc
atttcacagattcttggtgcctcaaaagtattaagttaggagaaagcagt
tgtaaggtttgggacctcagctgtaatttgggggtagaagttgcgagaga
gaggtaattgttcacatttattcagaatttatgccattaacatattagct
agatagatacagaaagatagaagccataacaccacttttaatctgcaagg
ccttgtcttcaagatgtttcagtgagtgagtagtcttgtctttcagagta
gatgtttcttacagcatggtgaatctgagtctcagtactaatacattgtt
tacatgacagtttaaataggaatggcccccataggctcgtaaatttgaat
gcttagccttgtgggattggcactacttgacaggataagggtatgctgtc
agaagaaagtgtgtcactggggtcagtttgagtttcaatgcctggatcag
tcacgtatcactctctcccgtcctgctgcctgcagatctgatgtagaact
ctagcttacttctcaggccaatgtctgctgatgcactgctccacctatac
tgataatggat
tgtctctaagggagagaggaaaggagggagagacaaagagacatagagct
acatttagagaagtaatgttcatggcctttgatctggattaagtgcagga
taggaaatgattgaacacagacaggattgtgggcttcccatgctggagcc
cagtggtcatacaccaagtgaggaaaaaattaactgtgtggaggtatgga
gatatggaggctcttctttatagataataaaaaaggagaaaagagctata
atcatactctattactgggaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31249233_31250411
seq2: B6Ng01-253L09.b_46_1206 (reverse)

seq1  ATCCATTATCAGTATAGGTGGAAGCAGGTGGCATTCAGGCAGACATTGTG  50
      ||||||||||||||||||||| |||||   ||| ||| |||||||||| |
seq2  ATCCATTATCAGTATAGGTGG-AGCAG--TGCA-TCA-GCAGACATTG-G  44

seq1  CTGGAGAAGT-AGCTAAGAGTTCTACATCCAGATCTGCAGGCAGCAGGAA  99
      |  ||||||| |||| |||||||||||| |||||||||||||||||||| 
seq2  CCTGAGAAGTAAGCT-AGAGTTCTACAT-CAGATCTGCAGGCAGCAGGAC  92

seq1  GGGAGAGAGTGATACGTGACCTGGATCAAGCATTTGAAACCTCAAACCTG  149
      ||||||||||||||||||||   |||| ||   |||||| |||||| |||
seq2  GGGAGAGAGTGATACGTGAC--TGATCCAGGCATTGAAA-CTCAAA-CTG  138

seq1  ACCCCAAGTGACACACTTTC-TCTGACAAGGCCATACCCCTTAATCCCTG  198
      ||||| |||||||||||||| |||||||    |||| ||||||   ||||
seq2  ACCCC-AGTGACACACTTTCTTCTGACA---GCATA-CCCTTA--TCCTG  181

seq1  TCAAGTAGTGCCAATCCCACAAGGCTAAGCATTCAAATTTACGAGCCTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTAGTGCCAATCCCACAAGGCTAAGCATTCAAATTTACGAGCCTAT  231

seq1  GGGGGCCATTCCTATTTAAACTGTCATGTAAACAATGTATTAGTACTGAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCATTCCTATTTAAACTGTCATGTAAACAATGTATTAGTACTGAG  281

seq1  ACTCAGATTCACCATGCTGTAAGAAACATCTACTCCTGAAAGACAAGACT  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTCAGATTCACCATGCTGTAAGAAACATCTACT-CTGAAAGACAAGACT  330

seq1  ACTCACTCACTGAAACATCTTGAAGACAAGGCCTTGCAGATTAAAAGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCACTGAAACATCTTGAAGACAAGGCCTTGCAGATTAAAAGTGG  380

seq1  TGTTATGGCTTCTATCTTTCTGTATCTATCTAGCTAATATGTTAATGGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGCTTCTATCTTTCTGTATCTATCTAGCTAATATGTTAATGGCA  430

seq1  TAAATTCTGAATAAATGTGAACAATTACCTCTCTCTCGCAACTTCTACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGAATAAATGTGAACAATTACCTCTCTCTCGCAACTTCTACCC  480

seq1  CCAAATTACAGCTGAGGTCCCAAACCTTACAACTGCTTTCTCCTAACTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTACAGCTGAGGTCCCAAACCTTACAACTGCTTTCTCCTAACTTA  530

seq1  ATACTTTTGAGGCACCAAGAATCTGTGAAATGGCTTTCTCTCTTATTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTGAGGCACCAAGAATCTGTGAAATGGCTTTCTCTCTTATTGGA  580

seq1  TTCATAACCCTAATAATTTTTGATGGAGAAATTTTGAAAGAGCCAAGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACCCTAATAATTTTTGATGGAGAAATTTTGAAAGAGCCAAGAGC  630

seq1  AACAAGCAAGTGGATAAAGAAAGAAATCTACCATTAGACTTTTATAGCGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCAAGTGGATAAAGAAAGAAATCTACCATTAGACTTTTATAGCGC  680

seq1  AGGCACCATCATATCTAAAAACCCTAGAAAATGTTCTACATGCGAAAGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCATCATATCTAAAAACCCTAGAAAATGTTCTACATGCGAAAGAC  730

seq1  ATGTCAAGCTTTATCAAATGCTATTTTATGAGATCTTGAAGTAATTTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAGCTTTATCAAATGCTATTTTATGAGATCTTGAAGTAATTTTTA  780

seq1  TATTTGTTGGATAGTAAAGTATGATGGGATCATACTTTTGATTGAAGCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGGATAGTAAAGTATGATGGGATCATACTTTTGATTGAAGCTA  830

seq1  AATTATTATGTAGAGTCATTTTCTTATCAGGGAGATATTCTCTACCATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTATGTAGAGTCATTTTCTTATCAGGGAGATATTCTCTACCATTC  880

seq1  TATTAGTTTAATTTAAGCATTATCATCTTGAAATTTATGTATCAATTAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTTAATTTAAGCATTATCATCTTGAAATTTATGTATCAATTAAG  930

seq1  AGGTAAATTTTTATTCTGGAGGCAGGGAGAAAGGGCAGGATCGTCACTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATTTTTATTCTGGAGGCAGGGAGAAAGGGCAGGATCGTCACTCA  980

seq1  GGATATACAGTTATGAGAAGGTTAACCATCCTTTGCCTGCTGCCATAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATACAGTTATGAGAAGGTTAACCATCCTTTGCCTGCTGCCATAATT  1030

seq1  CACTAAATGTATCACATAATGCAACTCTGTGGTAATTCATTTTTCCTGAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAATGTATCACATAATGCAACTCTGTGGTAATTCATTTTTCCTGAC  1080

seq1  AAAACCTGTAATGAGAGCACAAAATGAAATGAATCTAACTATTCACTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGTAATGAGAGCACAAAATGAAATGAATCTAACTATTCACTTGA  1130

seq1  CCCAGTGTGCAAACAGAAGGTAAGAGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  CCCAGTGTGCAAACAGAAGGTAAGAGAATTC  1161

seq1: chr18_31085673_31085976
seq2: B6Ng01-253L09.g_72_375

seq1  TGTCTCTAAGGGAGAGAGGAAAGGAGGGAGAGACAAAGAGACATAGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAGGGAGAGAGGAAAGGAGGGAGAGACAAAGAGACATAGAGCT  50

seq1  ACATTTAGAGAAGTAATGTTCATGGCCTTTGATCTGGATTAAGTGCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGAGAAGTAATGTTCATGGCCTTTGATCTGGATTAAGTGCAGGA  100

seq1  TAGGAAATGATTGAACACAGACAGGATTGTGGGCTTCCCATGCTGGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATGATTGAACACAGACAGGATTGTGGGCTTCCCATGCTGGAGCC  150

seq1  CAGTGGTCATACACCAAGTGAGGAAAAAATTAACTGTGTGGAGGTATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCATACACCAAGTGAGGAAAAAATTAACTGTGTGGAGGTATGGA  200

seq1  GATATGGAGGCTCTTCTTTATAGATAATAAAAAAGGAGAAAAGAGCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAGGCTCTTCTTTATAGATAATAAAAAAGGAGAAAAGAGCTATA  250

seq1  ATCATACTCTATTACTGGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTCTATTACTGGGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTG  304
      ||||
seq2  TGTG  304