BAC Information

Click to search

BAC

Clone NameB6Ng01-254C13
Chromosome18 (Build37)
Map Location 48,727,432 - 48,884,184
singlet/doubletdoublet
Overlap geneLOC545470
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
Downstream geneDtwd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254C13.bB6Ng01-254C13.g
ACCGA060701GA060702
length9691,169
definitionB6Ng01-254C13.b B6Ng01-254C13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,727,432 - 48,728,405)(48,883,022 - 48,884,184)
sequence
gaattcatttcttccattaaataagtgttgatcaataaacttgcaatccc
catttacatgggacaatagctcatatcacaataattgtttgatctccatc
tcatttggcatcctcataaccaattattttctttattcctgggttctcct
ctttttctcattataatcttagttggcagaaggtaccgacccaatgtcaa
agactggcagtctacctagaatctgtctgggttacaagcacaatgctaat
ctttagagaaactaaaggaatatattaaacctgatttttactgttttatt
ttattcgttttcctttctattacctaacaactatattgctgaaggtattc
tttagtaattgagaataatattagcaaaaatatgtgtgttattgcagtgc
cttccttagattcacctataaatatcagaaataactttaccaatgtaatt
gacattgtaaaagatatgatatgaaacgttattagtgaagtagatatcta
ctcaattgttttactgtacaaagctaaaaggattccaaaccctttctcaa
taaggtacaggaaaacacaaaccaagaagtattaactgtgattcaagatg
gcaagacaggagcctagcatggctgttcttcaacaggcccaacaagcaac
tgaaagagacagatgtagatacttacacccaaccaatggacagaagccgg
gaacccctgtggttgaattagggagaggctggaagaagctgaggaagagg
gagacccccataggaagactagcagactcaactaacctggaccctcgaga
tgtctcacacacagtcaccaacgaggcagcatacaccagctgatatgagg
ccctgacacatatacagcttagactgcctggtctgggctcaaggagagac
gatgcacctaaccctcagagacttagccccaggaagtagggaagtctgga
gaggtgggggagggatgtc

gaattctcttcaacttgtcccagaagcatggtttgctgatggctgaacca
cttttatttttcttcacttcatttcttgtcctgataaatttctcactttt
tctctagtagatctggtggagtagttgttaatgacatccatccccacaaa
ttattttaatctgtagtcttgtactgaaaaacgtatatcacttgacgtta
aaatgttcctataacttctatgagtatttttctcaaagagggaaaacaaa
caaaacaaagataggctaagagtcacccattattctcaggatcatgcatg
accagaacgaaaggaatataaataaggagctaatttagttcacatcaaat
tctattagtctctcattctctctcagtttaatatttctcctatctcccaa
tgtgcaccatttatgccaattaggaatcccacagccagccatgtttttcc
tgtcctaacttatgcaaattttactcattcttctaatcactgcttctcat
tatatattccttgcctattttcaatcttcattgatcttcctttgcttgaa
aatccaataggattatagtttgcagaaaactcttctatatttaattgcac
aaggtcagatgtgtgcaccagcatttcaattgctttgttctatcacccaa
tatattgtagaccttaaaagtacagattttggttcctccacaaaaacaaa
caaacaaacaaacaaacaaacccctgccactaaaagtcctcagtgagtgc
cctcttcttgctctaattgaagaatgagactcacaaaggaaaactctgct
catctataaagggtgtactcatggtctggtttaaatatgtaggcatttga
atcagcatataaccttttatatccttaatcagttatactttctaaaggct
gattgcagctttacattttttcaaagaataaatctggcctagataatttt
ggatctattatcctgaaagtagaaattgacagccatgtttattttatcca
tgaagtcagtaaaattatgtttaagaaatgttcccaacaaaaagaatgca
tttcttcttaacttatcttttagtgaattcagaaagacagtaaaattcat
ctaccttgcctttaaattatgatttgatgcttcaggccttataaccgtag
gagtatctcatttagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48727432_48728405
seq2: B6Ng01-254C13.b_46_1014

seq1  GAATTCATTTCTTCCATTAAATAAGTGTTGATCAATAAACTTGCAATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTCCATTAAATAAGTGTTGATCAATAAACTTGCAATCCC  50

seq1  CATTTACATGGGACAATAGCTCATATCACAATAATTGTTTGATCTCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATGGGACAATAGCTCATATCACAATAATTGTTTGATCTCCATC  100

seq1  TCATTTGGCATCCTCATAACCAATTATTTTCTTTATTCCTGGGTTCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGGCATCCTCATAACCAATTATTTTCTTTATTCCTGGGTTCTCCT  150

seq1  CTTTTTCTCATTATAATCTTAGTTGGCAGAAGGTACCGACCCAATGTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCATTATAATCTTAGTTGGCAGAAGGTACCGACCCAATGTCAA  200

seq1  AGACTGGCAGTCTACCTAGAATCTGTCTGGGTTACAAGCACAATGCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCAGTCTACCTAGAATCTGTCTGGGTTACAAGCACAATGCTAAT  250

seq1  CTTTAGAGAAACTAAAGGAATATATTAAACCTGATTTTTACTGTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGAAACTAAAGGAATATATTAAACCTGATTTTTACTGTTTTATT  300

seq1  TTATTCGTTTTCCTTTCTATTACCTAACAACTATATTGCTGAAGGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGTTTTCCTTTCTATTACCTAACAACTATATTGCTGAAGGTATTC  350

seq1  TTTAGTAATTGAGAATAATATTAGCAAAAATATGTGTGTTATTGCAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTAATTGAGAATAATATTAGCAAAAATATGTGTGTTATTGCAGTGC  400

seq1  CTTCCTTAGATTCACCTATAAATATCAGAAATAACTTTACCAATGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAGATTCACCTATAAATATCAGAAATAACTTTACCAATGTAATT  450

seq1  GACATTGTAAAAGATATGATATGAAACGTTATTAGTGAAGTAGATATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTAAAAGATATGATATGAAACGTTATTAGTGAAGTAGATATCTA  500

seq1  CTCAATTGTTTTACTGTACAAAGCTAAAAGGATTCCAAACCCTTTCTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTGTTTTACTGTACAAAGCTAAAAGGATTCCAAACCCTTTCTCAA  550

seq1  TAAGGTACAGGAAAACACAAACCAAGAAGTATTAACTGTGATTCAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACAGGAAAACACAAACCAAGAAGTATTAACTGTGATTCAAGATG  600

seq1  GCAAGACAGGAGCCTAGCATGGCTGTTCTTCAACAGGCCCAACAAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAGGAGCCTAGCATGGCTGTTCTTCAACAGGCCCAACAAGCAAC  650

seq1  TGAAAGAGACAGATGTAGATACTTACACCCAACCAATGGACAGAAGCCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGACAGATGTAGATACTTACACCCAACCAATGGACAGAAGCCGG  700

seq1  GAACCCCTGTGGTTGAATTAGGGAGAGGCTGGAAGAAGCTGAGGAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTGTGGTTGAATTAGGGAGAGGCTGGAAGAAGCTGAGGAAGAGG  750

seq1  GAGACCCCCATAGGAAGACTAGCAGACTCAACTAACCTGGACCCTCGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCCATAGGAAGACTAGCAGACTCAACTAACCTGGACCCTCGAGA  800

seq1  TGTCTCACACACAGTCACCAACGAGGCAGCATACACCAGCTGATATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACACACAGTCACCAACGAGGCAGCATACACCAGCTGATATGAGG  850

seq1  CCCTGACACATATACAGCTTAGGACTGCCTGGTCTGGGCTCAAGGAGAGA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCCTGACACATATACAGCTTA-GACTGCCTGGTCTGGGCTCAAGGAGAGA  899

seq1  CGATGCACCTAACCCTCAAGAGACTTAGGCCCCAGGAAGTAGGGAAGTCT  950
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CGATGCACCTAACCCTC-AGAGACTTA-GCCCCAGGAAGTAGGGAAGTCT  947

seq1  GGAGAGGTGGGGGAGGGGAATGTC  974
      |||||||||||||||||  |||||
seq2  GGAGAGGTGGGGGAGGG--ATGTC  969


seq1: chr18_48883022_48884184
seq2: B6Ng01-254C13.g_68_1236 (reverse)

seq1  AGTTCTAAATGAGTACCTCTTTACTGTTTATAGCCCTGGAGCATCAAATC  50
      |||||||||||||   |||  ||| |||   || |||| |||||||||||
seq2  AGTTCTAAATGAGATACTC-CTACGGTTATAAGGCCTGAAGCATCAAATC  49

seq1  AT-ATTTAAA-GCAA-GTAGATG-ATTTTACTGTCTTTTCTGAATTCACT  96
      || ||||||| |||| ||||||| ||||||||||| ||||||||||||||
seq2  ATAATTTAAAGGCAAGGTAGATGAATTTTACTGTC-TTTCTGAATTCACT  98

seq1  AAAGATTAAGTTAAAGAAGAAAATTGCATTCTTTT--GTGGGAACATTTC  144
      |||   |||||| |||||||||  |||||||||||   ||||||||||||
seq2  AAAAGATAAGTT-AAGAAGAAA--TGCATTCTTTTTGTTGGGAACATTTC  145

seq1  TAAAACATAATTTTTACTGACTTCATGGAT-AAATAAACAATGGCTGTCA  193
      | |||||||| ||||||||||||||||||| |||||||| ||||||||||
seq2  TTAAACATAA-TTTTACTGACTTCATGGATAAAATAAAC-ATGGCTGTCA  193

seq1  A-TTCTACTTTCAGGATAATTGATCC-AAATTATCTAGGCCAGATTTATT  241
      | |||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  ATTTCTACTTTCAGGATAATAGATCCAAAATTATCTAGGCCAGATTTATT  243

seq1  CTTTG-AAAAATGT-AAGCTGCAATCAGCCTTTAG-AAGTATAACTGATT  288
      ||||| |||||||| |||||||||||||||||||| ||||||||||||||
seq2  CTTTGAAAAAATGTAAAGCTGCAATCAGCCTTTAGAAAGTATAACTGATT  293

seq1  AAGGATATAAAAGGTTATATGCTGATTCAAATG-CTACATATTTAAACCA  337
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGATATAAAAGGTTATATGCTGATTCAAATGCCTACATATTTAAACCA  343

seq1  GACCATGAGTACACCCTTTATAGATGAGCAGAGTTTTCCTTTGTGAGTCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGTACACCCTTTATAGATGAGCAGAGTTTTCCTTTGTGAGTCT  393

seq1  CATTCTTCAATTAGAGCAAGAAGAGGGCACTCACTGAGGACTTTTAGTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCAATTAGAGCAAGAAGAGGGCACTCACTGAGGACTTTTAGTGG  443

seq1  CAGGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTGGAGGAACCAAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTGGAGGAACCAAAA  493

seq1  TCTGTACTTTTAAGGTCTACAATATATTGGGTGATAGAACAAAGCAATTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTTTTAAGGTCTACAATATATTGGGTGATAGAACAAAGCAATTG  543

seq1  AAATGCTGGTGCACACATCTGACCTTGTGCAATTAAATATAGAAGAGTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGTGCACACATCTGACCTTGTGCAATTAAATATAGAAGAGTTT  593

seq1  TCTGCAAACTATAATCCTATTGGATTTTCAAGCAAAGGAAGATCAATGAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAACTATAATCCTATTGGATTTTCAAGCAAAGGAAGATCAATGAA  643

seq1  GATTGAAAATAGGCAAGGAATATATAATGAGAAGCAGTGATTAGAAGAAT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAATAGGCAAGGAATATATAATGAGAAGCAGTGATTAGAAGAAT  693

seq1  GAGTAAAATTTGCATAAGTTAGGACAGGAAAAACATGGCTGGCTGTGGGA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAATTTGCATAAGTTAGGACAGGAAAAACATGGCTGGCTGTGGGA  743

seq1  TTCCTAATTGGCATAAATGGTGCACATTGGGAGATAGGAGAAATATTAAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTGGCATAAATGGTGCACATTGGGAGATAGGAGAAATATTAAA  793

seq1  CTGAGAGAGAATGAGAGACTAATAGAATTTGATGTGAACTAAATTAGCTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGAATGAGAGACTAATAGAATTTGATGTGAACTAAATTAGCTC  843

seq1  CTTATTTATATTCCTTTCGTTCTGGTCATGCATGATCCTGAGAATAATGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATATTCCTTTCGTTCTGGTCATGCATGATCCTGAGAATAATGG  893

seq1  GTGACTCTTAGCCTATCTTTGTTTTGTTTGTTTTCCCTCTTTGAGAAAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTTAGCCTATCTTTGTTTTGTTTGTTTTCCCTCTTTGAGAAAAA  943

seq1  TACTCATAGAAGTTATAGGAACATTTTAACGTCAAGTGATATACGTTTTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATAGAAGTTATAGGAACATTTTAACGTCAAGTGATATACGTTTTT  993

seq1  CAGTACAAGACTACAGATTAAAATAATTTGTGGGGATGGATGTCATTAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAGACTACAGATTAAAATAATTTGTGGGGATGGATGTCATTAAC  1043

seq1  AACTACTCCACCAGATCTACTAGAGAAAAAGTGAGAAATTTATCAGGACA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTCCACCAGATCTACTAGAGAAAAAGTGAGAAATTTATCAGGACA  1093

seq1  AGAAATGAAGTGAAGAAAAATAAAAGTGGTTCAGCCATCAGCAAACCATG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAAGTGAAGAAAAATAAAAGTGGTTCAGCCATCAGCAAACCATG  1143

seq1  CTTCTGGGACAAGTTGAAGAGAATTC  1163
      ||||||||||||||||||||||||||
seq2  CTTCTGGGACAAGTTGAAGAGAATTC  1169


| Home | SequenceCutter | Blast | Download |