BAC Information

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BAC

Clone NameB6Ng01-254H21
Chromosome18 (Build37)
Map Location 71,122,085 - 71,123,178
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254H21.bB6Ng01-254H21.g
ACCGA060944GA060945
length1,2261,101
definitionB6Ng01-254H21.b B6Ng01-254H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcttctatatgcatattagcctttaagccttcaatgggcaggct
gctatctgtttaataacagaagttagttatatagtaagtgactagggagg
tgggaaagaactcctaatataggagaaatacaatacatagccatggacaa
gcaggcatgagtgggatgtcaagaaggggagagtgttaaacagagaagag
aagggaagagagataaaggaggatgaataggcaacactaaggaccatctg
aggggccatatggaaacctaatacagtataaacctcttataatacacata
aatagaaattatccaaacaaaatcatcaaataacaaggagaaagagtcac
aaatagatctttcaccacaaagttaaacctccagcagtgggaatgtgtta
cagctaattgaattgttagcaaagggagtctttgaaaaccctaaaccaag
gtattaccaaggatattggttgctttctacaaactaatggtagggccttt
atagctggagacagcatctatatatctcattaaatgtggataaatcaagc
tggtccctagctagtctttccctcttctgactagtgttcatggtactgga
agatactaaaatatactaccagaggagaaagctaaaaaaccctttgatac
actggcaaactgtctgtatgatacactggtatcatagggacacaaatggt
gtaatatcagccaatcaatatctgattggattaaaaccatactccatgag
aaggaatctacccctgacactgcctgggtagccatgaacctgagactaga
taagtcatggaccaagggaacacaagttactattattttgctaaaggaaa
atatcaataaagtaaccttttaggacattttgttataaccttaaatatgt
gtttcacttagctgtcaactgagaacttccttcgtacaggaaatgggaaa
taatatagagacccacaactggacaatgtgcacagggtgagagaactaga
caataatcctaaatggaatgttcttcatcaatctatccactgtgagatct
cagcttacaaagatgagatggaaataattctaggagaaaggtatgggaca
ataaaagaataaacgagccttcagaaaccaacatgattctacacaccaac
ctcacagagattctaggccagaatgccaatattgaacaaaggccaaaaca
gagagtcccaagccctctgtgaaatg
gaattcactggaagatcacttcaccctgttcatcaaaatgtggcctttag
gtttgaccctccatctgtctatattttaagtttttaaatcactgtttctg
ttagtcactattcctgttttatgagtagacattttggaaagtataatttt
aaaataataatttatggactgctatctagtttagaatatgtgcagtaaca
gttctgagtcatagcccatggcacaaaatagttgtttaataaactaatag
acatctgaagaccaagtgaattattaaggattctccggcatgctgctttg
gtaaatgagtatgaggaaataaatggacttgtttctttttgtagttaagg
tttctagcacatccttagtttcttttgattttttattctccctttataac
atttggagattctctagtggctgagaccttttatggatcacgtgccagcc
catatggccatttgatgggtgaagccatctggtgccaacttgacagctgt
gatcaggtgcaagtttaactctaaagtttttcctgtgctttataacctgt
ttcttggaaggcacgtaagagagatgttttatgttgctacattgggttca
aaacacagtattagtctttagtatcatggtggatgcttaataatttcatg
tgaagtgtggatttgtttctgttcatgggatgaatagctttttaagtttg
gactctcctctggaatgtactcttctagacagagtgacaggaggttgggg
aacagatcattgtcaatctaacaatgaatgcagcgatggatagaaccggt
gtagcttggctgtagaagagtgtttcctgaatatagcatccggaaagcaa
agatggtgtcagcgtggaggctcgtgaagtgtctactgtagttcagacag
agcagcaactttgattagagtgcagaatgctacgatcccaaaacggagtc
aaagagaccaccaggaaataaggtctcctggtgaacaaaaaactacctag
agacaccgtagggggcaagtattaagttgttctccttggccagtaaagta
tactaaggacattgggtaccctaagctgggctgggtgggcaggaacatat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71122085_71123178
seq2: B6Ng01-254H21.g_67_1167

seq1  GAATTCACTGGAAGATCACTTCACCCTGTTCATCAAAATGTGGCCTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAGATCACTTCACCCTGTTCATCAAAATGTGGCCTTTAG  50

seq1  GTTTGACCCTCCATCTGTCTATATTTTAAGTTTTTAAATCACTGTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCCTCCATCTGTCTATATTTTAAGTTTTTAAATCACTGTTTCTG  100

seq1  TTAGTCACTATTCCTGTTTTATGAGTAGACATTTTGGAAAGTATAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACTATTCCTGTTTTATGAGTAGACATTTTGGAAAGTATAATTTT  150

seq1  AAAATAATAATTTATGGACTGCTATCTAGTTTAGAATATGTGCAGTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAATTTATGGACTGCTATCTAGTTTAGAATATGTGCAGTAACA  200

seq1  GTTCTGAGTCATAGCCCATGGCACAAAATAGTTGTTTAATAAACTAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTCATAGCCCATGGCACAAAATAGTTGTTTAATAAACTAATAG  250

seq1  ACATCTGAAGACCAAGTGAATTATTAAGGATTCTCCGGCATGCTGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGAAGACCAAGTGAATTATTAAGGATTCTCCGGCATGCTGCTTTG  300

seq1  GTAAATGAGTATGAGGAAATAAATGGACTTGTTTCTTTTTGTAGTTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGAGTATGAGGAAATAAATGGACTTGTTTCTTTTTGTAGTTAAGG  350

seq1  TTTCTAGCACATCCTTAGTTTCTTTTGATTTTTTATTCTCCCTTTATAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGCACATCCTTAGTTTCTTTTGATTTTTTATTCTCCCTTTATAAC  400

seq1  ATTTGGAGATTCTCTAGTGGCTGAGACCTTTTATGGATCACGTGCCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGATTCTCTAGTGGCTGAGACCTTTTATGGATCACGTGCCAGCC  450

seq1  CATATGGCCATTTGATGGGTGAAGCCATCTGGTGCCAACTTGACAGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGCCATTTGATGGGTGAAGCCATCTGGTGCCAACTTGACAGCTGT  500

seq1  GATCAGGTGCAAGTTTAACTCTAAAGTTTTTCCTGTGCTTTATAACCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTGCAAGTTTAACTCTAAAGTTTTTCCTGTGCTTTATAACCTGT  550

seq1  TTCTTGGAAGGCACGTAAGAGAGATGTTTTATGTTGCTACATTGGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGAAGGCACGTAAGAGAGATGTTTTATGTTGCTACATTGGGTTCA  600

seq1  AAACACAGTATTAGTCTTTAGTATCATGGTGGATGCTTAATAATTTCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTATTAGTCTTTAGTATCATGGTGGATGCTTAATAATTTCATG  650

seq1  TGAAGTGTGGATTTGTTTCTGTTCATGGGATGAATAGCTTTTTAAGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTGGATTTGTTTCTGTTCATGGGATGAATAGCTTTTTAAGTTTG  700

seq1  GACTCTCCTCTGGAATGTACTCTTCTAGACAGAGTGACAGGAGGTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCCTCTGGAATGTACTCTTCTAGACAGAGTGACAGGAGGTTGGGG  750

seq1  AACAGATCATTGTCAATCTAACAATGAATGCAGCGATGGATAGAACCGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCATTGTCAATCTAACAATGAATGCAGCGATGGATAGAACCGGT  800

seq1  GTAGCTTGGCTGTAGAAGAGTG-TTCCTGAATATAGCATCCGGAAAGCAA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGCTTGGCTGTAGAAGAGTGTTTCCTGAATATAGCATCCGGAAAGCAA  850

seq1  AGATGGTGTCAGCGTGGAGGCTCGTGAAGTGTCTACTGTAGTTCAGACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGTCAGCGTGGAGGCTCGTGAAGTGTCTACTGTAGTTCAGACAG  900

seq1  AGCAGCAAC-TTGATTAGAGTGCAGAATGCTACGATCCAAAAACGGAGTC  948
      ||||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  AGCAGCAACTTTGATTAGAGTGCAGAATGCTACGATCCCAAAACGGAGTC  950

seq1  AAAGAGA-CACCAGAAATAAAGGTCTTCTGGTGAACAAAAAACTA-CTAG  996
      ||||||| |||||| ||  ||||||| |||||||||||||||||| ||||
seq2  AAAGAGACCACCAGGAAATAAGGTCTCCTGGTGAACAAAAAACTACCTAG  1000

seq1  AGACACCGTAGGGGGCAAGTATTAAGTTG-TCTCCTT-GCCAGTAAAGTT  1044
      ||||||||||||||||||||||||||||| ||||||| ||||||||||| 
seq2  AGACACCGTAGGGGGCAAGTATTAAGTTGTTCTCCTTGGCCAGTAAAGT-  1049

seq1  AATAACTAAGGACATT-GGTA-CCTAAGCT-GGCT-GGTGGGCAGGAACA  1090
       || |||||||||||| |||| |||||||| |||| ||||||||||||||
seq2  -AT-ACTAAGGACATTGGGTACCCTAAGCTGGGCTGGGTGGGCAGGAACA  1097

seq1  TATT  1094
      ||||
seq2  TATT  1101