BAC Information

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BAC

Clone NameB6Ng01-254I04
Chromosome18 (Build37)
Map Location 72,182,871 - 72,317,274
singlet/doubletdoublet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411, LOC100042955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254I04.bB6Ng01-254I04.g
ACCGA060958GA060959
length1,1881,061
definitionB6Ng01-254I04.b B6Ng01-254I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,182,871 - 72,184,061)(72,316,168 - 72,317,274)
sequence
gaattcttaacaaactatgtttctgaatatgtgcacagattcatgcatgc
tctttgtaaacacacagggatgataattattttctcataacgtccttgcc
acactgcgctttagaacatttttaaacaaggtgggttgtttacaatgaaa
gcatcttatacacagaacacaaagaagtttgaaattgctgaccaacgaat
tatctcagaagtcagagtttccctttcgatgtcttctaatatttgaaatc
ccaaccagaagcacaaacaacacaacaaaaccttatacccttattaaaag
tgatgacaaaacaaatgagttcttatgaacaatagcagggacaaacctcc
agtttccagcagccacaacacttcttggaagatcgggaggctgttttcca
agttgcagaatggttatacatcatacccagagaactccactatcgaaggt
ggcaacacagttatttgttttctagcttttgttcattctcttgccatgtt
atcttagagatcctcaaagcttacagcagcaggtcggggatagaatttca
gtttttagtcaaaggtgtagatgctgatcagcggaatcaagaacacagag
ctcatccaagttttggcatggtgtctcggtcaccactagtcttttatttc
ctgtctgagtagtttatgcacaattacagtaaaaggcaattcacagcaca
aataggttccatttgcttgcttggtgtgtactgagccctaatcttgaatt
taaaaagcattagaatcccgcctcccccagaaaacctggggtattctggc
aagtaaaataatcgtatctgatcaggctacaagttgaaagggtattaata
tacttgctcaaaaagaagtccatctctctatccccttctgtgtttaaagg
gaatcttttctcttggaaaatgaaaagaaactcagtggcagtttcttcag
cagagccttttttcttttcccattttttgttcagaaagcaaatgagagag
agagacagacagacagacagacagagagagacagttagacagagacgaga
gatacagagaaagagacgacgacagagattccctctatccttagttttat
atgaagctgcaatgaattggatttccaagaaaaaatactctactttcctg
ttgaatttatatgtatatctgggttgtcttgcaatgaa
gaattcctagcacatccattgtccactaaaaaaagaaaaagatgtttaat
ttgatggtagaacgaagattctgtttaatgaagtggcatttttattatta
ttattatttttttttttttttactttagcaaagcatagctttgaggattt
aacagtatccacaagatgttgagtcagagctagaggagacactcagttta
gggatagaagacttgaaggtaaattcttgagttttctttggatgactcag
gatgccttcttgtgtcatgagataatgagggactgctgaatgggccatgc
ttttgctgggctagtacctttatatagtgtgaatggccacatctcttggt
gatgtcctcttctgtgaatgataatactaaattctgagaggatgccatca
gcttcaggtcagctcttcctaccacaactggcctatgaatacttttgact
gtggaggggaaaaaaacaacaacaacaacaacaaaaaacaaaacaaaaaa
acagatgacatgctgatcatcaccagtgggaaaataactctttactatga
tgcttaataaacactggtgagaatattcttcttactcgaataattttata
aagttataaagagagtagaatctaggaaaaatcctcaaaagatgagagaa
tacagaacatctccaaattgttcttgagttgtctttttatgagtaaatct
atgagaagaccattactatactgagatagactttggtgcacataagcaat
gggtagaatgtagaaaccaggactggaatacagtaactgtgcttttagat
gtgctttctcattgatctcctctagaatggctactcaggttcctaaagta
aaaaacagtgatttatctcagagatgcacctgttgctggcttttagggca
gtctaaatgagctgccttgccctggcatctttcatccctgccttctgctg
cttcacttcaggaccacgtctctcatgatgtttctattttcccttttttt
ctttccttttcttcattctttaattacttcctctcctcctctctctctcc
tctctcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_72182871_72184061
seq2: B6Ng01-254I04.b_48_1235

seq1  GAATTCTTAACAAACTATGTTTCTGAATATGTGCACAGATTCATGCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAACTATGTTTCTGAATATGTGCACAGATTCATGCATGC  50

seq1  TCTTTGTAAACACACAGGGATGATAATTATTTTCTCATAACGTCCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAACACACAGGGATGATAATTATTTTCTCATAACGTCCTTGCC  100

seq1  ACACTGCGCTTTAGAACATTTTTAAACAAGGTGGGTTGTTTACAATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCGCTTTAGAACATTTTTAAACAAGGTGGGTTGTTTACAATGAAA  150

seq1  GCATCTTATACACAGAACACAAAGAAGTTTGAAATTGCTGACCAACGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTATACACAGAACACAAAGAAGTTTGAAATTGCTGACCAACGAAT  200

seq1  TATCTCAGAAGTCAGAGTTTCCCTTTCGATGTCTTCTAATATTTGAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGAAGTCAGAGTTTCCCTTTCGATGTCTTCTAATATTTGAAATC  250

seq1  CCAACCAGAAGCACAAACAACACAACAAAACCTTATACCCTTATTAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGAAGCACAAACAACACAACAAAACCTTATACCCTTATTAAAAG  300

seq1  TGATGACAAAACAAATGAGTTCTTATGAACAATAGCAGGGACAAACCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAAAACAAATGAGTTCTTATGAACAATAGCAGGGACAAACCTCC  350

seq1  AGTTTCCAGCAGCCACAACACTTCTTGGAAGATCGGGAGGCTGTTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCAGCAGCCACAACACTTCTTGGAAGATCGGGAGGCTGTTTTCCA  400

seq1  AGTTGCAGAATGGTTATACATCATACCCAGAGAACTCCACTATCGAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGAATGGTTATACATCATACCCAGAGAACTCCACTATCGAAGGT  450

seq1  GGCAACACAGTTATTTGTTTTCTAGCTTTTGTTCATTCTCTTGCCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACAGTTATTTGTTTTCTAGCTTTTGTTCATTCTCTTGCCATGTT  500

seq1  ATCTTAGAGATCCTCAAAGCTTACAGCAGCAGGTCGGGGATAGAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAGATCCTCAAAGCTTACAGCAGCAGGTCGGGGATAGAATTTCA  550

seq1  GTTTTTAGTCAAAGGTGTAGATGCTGATCAGCGGAATCAAGAACACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGTCAAAGGTGTAGATGCTGATCAGCGGAATCAAGAACACAGAG  600

seq1  CTCATCCAAGTTTTGGCATGGTGTCTCGGTCACCACTAGTCTTTTATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCAAGTTTTGGCATGGTGTCTCGGTCACCACTAGTCTTTTATTTC  650

seq1  CTGTCTGAGTAGTTTATGCACAATTACAGTAAAAGGCAATTCACAGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAGTAGTTTATGCACAATTACAGTAAAAGGCAATTCACAGCACA  700

seq1  AATAGGTTCCATTTGCTTGCTTGGTGTGTACTGAGCCCTAATCTTGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTCCATTTGCTTGCTTGGTGTGTACTGAGCCCTAATCTTGAATT  750

seq1  TAAAAAGCATTAGAATCCCGCCTCCCCCAGAAAACCTGGGGTATTCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCATTAGAATCCCGCCTCCCCCAGAAAACCTGGGGTATTCTGGC  800

seq1  AAGTAAAATAATCGTATCTGATCAGGCTACAAGTTGAAAGGGTATTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAATAATCGTATCTGATCAGGCTACAAGTTGAAAGGGTATTAATA  850

seq1  TACTTGCTCAAAAAGAAGTCCATCTCTCTATCCCCTTCTGTGTTTAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTCAAAAAGAAGTCCATCTCTCTATCCCCTTCTGTGTTTAAAGG  900

seq1  GAATCTTTTCTCTTGGAAAATGAAAAGAAACTCAGTGGCAGTTTCTTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTTCTCTTGGAAAATGAAAAGAAACTCAGTGGCAGTTTCTTCAG  950

seq1  CAGAGCCTTTTTTC-TATCCCATTTTT--GTCAGAAAGCAAATGAGAGAG  997
      |||||||||||||| | ||||||||||   ||||||||||||||||||||
seq2  CAGAGCCTTTTTTCTTTTCCCATTTTTTGTTCAGAAAGCAAATGAGAGAG  1000

seq1  AGAGACAGACAGACAGACAGACAGAGAGAGACAGTAAGACAGAGACAGAG  1047
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  AGAGACAGACAGACAGACAGACAGAGAGAGACAGTTAGACAGAGAC-GAG  1049

seq1  AGATACAGAGAAAGAGACAGACAGACAGAGATTCACTCTATCCCTAAGTT  1097
      |||||||||||||||||| ||| ||||||||||| |||||| ||| ||||
seq2  AGATACAGAGAAAGAGAC-GAC-GACAGAGATTCCCTCTAT-CCTTAGTT  1096

seq1  TTATATGAAGCTGCCAATGAATTTGATTTCCAAAGAAAAATAACTCTTAC  1147
      ||||||||||||| ||||||||| ||||||| ||||||||  |||||   
seq2  TTATATGAAGCTG-CAATGAATTGGATTTCC-AAGAAAAAATACTCTACT  1144

seq1  TTCCTG-TGAGTGTATATGTATATTGTGTGTGTTTTTGCAATGAA  1191
      |||||| ||| | |||||||||| | || ||  | ||||||||||
seq2  TTCCTGTTGAATTTATATGTATA-TCTGGGTTGTCTTGCAATGAA  1188

seq1: chr18_72316168_72317274
seq2: B6Ng01-254I04.g_67_1127 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGA  50
                                        |||| |||||||| ||
seq2  ----------------------------------GAGA-AGAGAGAG-GA  14

seq1  GAGAGAGAGAGAGAGAGAGAGAAGATAATAAAAAGAAATGAAAAGAAAAA  100
      ||||||||| ||| ||||| |||| |||| |||   ||||||    ||||
seq2  GAGAGAGAG-GAG-GAGAG-GAAG-TAATTAAA--GAATGAA---GAAAA  55

seq1  GGAAAAGAAAAAAAAGAGAAAATAGAAACATCATGAGAGACGTGGTCCTG  150
      |||||   |||||||| |||||||||||||||||||||||||||||||||
seq2  GGAAA--GAAAAAAAGGGAAAATAGAAACATCATGAGAGACGTGGTCCTG  103

seq1  AAGTGAAGCAGCAGAAGGCAGGGATGAAAGATGCCAGGGCAAGGCAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCAGCAGAAGGCAGGGATGAAAGATGCCAGGGCAAGGCAGCTC  153

seq1  ATTTAGACTGCCCT-AAAGCCAGCAACAGGTGCATCTCTGAGATAAATCA  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTAGACTGCCCTAAAAGCCAGCAACAGGTGCATCTCTGAGATAAATCA  203

seq1  CTGTTTTTTACTTTAGGAACCTGAGTAGCCATTCTAGAGGAGATCAATGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTACTTTAGGAACCTGAGTAGCCATTCTAGAGGAGATCAATGA  253

seq1  GAAAGCACATCTAAAAGCACAGTTACTGTATTCCAGTCCTGGTTTCTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCACATCTAAAAGCACAGTTACTGTATTCCAGTCCTGGTTTCTACA  303

seq1  TTCTACCCATTGCTTATGTGCACCAAAGTCTATCTCAGTATAGTAATGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCCATTGCTTATGTGCACCAAAGTCTATCTCAGTATAGTAATGGT  353

seq1  CTTCTCATAGATTTACTCATAAAAAGACAACTCAAGAACAATTTGGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATAGATTTACTCATAAAAAGACAACTCAAGAACAATTTGGAGAT  403

seq1  GTTCTGTATTCTCTCATCTTTTGAGGATTTTTCCTAGATTCTACTCTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTATTCTCTCATCTTTTGAGGATTTTTCCTAGATTCTACTCTCTT  453

seq1  TATAACTTTATAAAATTATTCGAGTAAGAAGAATATTCTCACCAGTGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTATAAAATTATTCGAGTAAGAAGAATATTCTCACCAGTGTTT  503

seq1  ATTAAGCATCATAGTAAAGAGTTATTTTCCCACTGGTGATGATCAGCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATCATAGTAAAGAGTTATTTTCCCACTGGTGATGATCAGCATG  553

seq1  TCATCTGTTTTTTTGTTTTGTTTTTTGTTGTTGTTGTTGTTGTTTTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTTTTTTTGTTTTGTTTTTTGTTGTTGTTGTTGTTGTTTTTTTC  603

seq1  CCCTCCACAGTCAAAAGTATTCATAGGCCAGTTGTGGTAGGAAGAGCTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACAGTCAAAAGTATTCATAGGCCAGTTGTGGTAGGAAGAGCTGA  653

seq1  CCTGAAGCTGATGGCATCCTCTCAGAATTTAGTATTATCATTCACAGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCTGATGGCATCCTCTCAGAATTTAGTATTATCATTCACAGAAG  703

seq1  AGGACATCACCAAGAGATGTGGCCATTCACACTATATAAAGGTACTAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATCACCAAGAGATGTGGCCATTCACACTATATAAAGGTACTAGCC  753

seq1  CAGCAAAAGCATGGCCCATTCAGCAGTCCCTCATTATCTCATGACACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGCATGGCCCATTCAGCAGTCCCTCATTATCTCATGACACAAG  803

seq1  AAGGCATCCTGAGTCATCCAAAGAAAACTCAAGAATTTACCTTCAAGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCCTGAGTCATCCAAAGAAAACTCAAGAATTTACCTTCAAGTCT  853

seq1  TCTATCCCTAAACTGAGTGTCTCCTCTAGCTCTGACTCAACATCTTGTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCCTAAACTGAGTGTCTCCTCTAGCTCTGACTCAACATCTTGTGG  903

seq1  ATACTGTTAAATCCTCAAAGCTATGCTTTGCTAAAGTAAAAAAAAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTAAATCCTCAAAGCTATGCTTTGCTAAAGTAAAAAAAAAAAAA  953

seq1  AATAATAATAATAATAAAAATGCCACTTCATTAAACAGAATCTTCGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAATAAAAATGCCACTTCATTAAACAGAATCTTCGTTCT  1003

seq1  ACCATCAAATTAAACATCTTTTTCTTTTTTTAGTGGACAATGGATGTGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAAATTAAACATCTTTTTCTTTTTTTAGTGGACAATGGATGTGCT  1053

seq1  AGGAATTC  1107
      ||||||||
seq2  AGGAATTC  1061