BAC Information

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BAC

Clone NameB6Ng01-254O24
Chromosome18 (Build37)
Map Location 41,566,236 - 41,757,046
singlet/doubletdoublet
Overlap genenone
Upstream geneKctd16, EG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254O24.bB6Ng01-254O24.g
ACCGA061272GA061273
length5761,204
definitionB6Ng01-254O24.b B6Ng01-254O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,566,236 - 41,566,811)(41,755,873 - 41,757,046)
sequence
gaattcccaaggtaattttgaaccaaaaggtacataacagtgtagtgaac
aacagctgtactgtcttattcaaaaacagaaacactcctccattgctgat
ggaagtgcaaatttgtacaaccactctggaaagcaatttggtgacttctc
agaaaattggggatatatctacctcaagtcccagctatatcactcttggg
catatatctgaaaaatgctccaccatactgcaaaaacacttgctcaacta
agttttacagcagctttattcatagtagccaaaaaactagaaacaaccca
tagacccttcaaccaaataatggataaaggaaataaggttcatttacaca
gtgaaatactactcagctattaaaaacaaggataccatgtaatttatagg
taaatggatggaacaaaacaatatcctgagtgaggtaatccagatccaaa
atgatatgcatggcatgtattcacctgtaagtggatattaattataaagt
acaggattatcatgctacaatccacagacccaacagagctaagtgacaag
gagggtccaagagaggatgcttgaat
gaattcagagagattctagaatagatatgggcagggaaaatatgatccag
gataaagcttttgaattggatttttagaaaagagacagatgttgaaatat
aaagatgtagaagagatacagtagcttatacatggtacaccttttcaaga
aaacagcagggtggaaagttgccatcaggattcataggtgcaagtcgtct
gtgacttatggggaagtaatggaataagccctgaagatctagtcaagaac
aaaattcagtgactgttttgtttgaatttttgtcagcatgacatacacct
aaaccatatctgggaagagaaacctcagttgagaaaaaaaatgccatcat
atttttttgtaggcagtctgaagggcattttctctattaataattggtat
ggaaggcctagcccatggtggctggtgctacctctgggcaggtggtccta
agttaaataagaaagcaggttaagcatggagagcaagccagtaagtagca
gtcttccatggcctctggatcagttctagcctccagtttctaccctgctt
gagttcctggcctgacttttctcagtgaaaaactatgactgtgacatgta
accccaataaaacttttccttcccaagttacttttgggtatggtgattta
tcccaacaatagaaaccagaccaagagtgaagtagccattgagacaatat
cagttttgccatggaatgtttcagtgaacagtgattggtggtgaacacac
ctagctattatttagtttgtttttgtatgattatgagagagagatacact
ctcattgaagcaattcttctttcccacatacatccagaggcatttttggt
agcatgatgccagggaactaccttttcaatgcagattcaaggaagccagg
tcctcctttcttggctttcataaattttatcagacatcacatgatctatt
gctcctgccgtcttggagcactataacttgagtggatgaacccaagcacc
aagaggaatgctaggaaagcatttatttgcattgccagtttgttgtagca
atccttgggatggcagtggaacttgaccctacactttcacagctgttctc
acctttcaaggctggttttcaccttttctactaatggtaaattaagacat
aagcccggattctctgcctacttaaggccctagctgtagctactttcccc
tttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41566236_41566811
seq2: B6Ng01-254O24.b_50_625

seq1  GAATTCCCAAGGTAATTTTGAACCAAAAGGTACATAACAGTGTAGTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGTAATTTTGAACCAAAAGGTACATAACAGTGTAGTGAAC  50

seq1  AACAGCTGTACTGTCTTATTCAAAAACAGAAACACTCCTCCATTGCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTGTACTGTCTTATTCAAAAACAGAAACACTCCTCCATTGCTGAT  100

seq1  GGAAGTGCAAATTTGTACAACCACTCTGGAAAGCAATTTGGTGACTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCAAATTTGTACAACCACTCTGGAAAGCAATTTGGTGACTTCTC  150

seq1  AGAAAATTGGGGATATATCTACCTCAAGTCCCAGCTATATCACTCTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGGGATATATCTACCTCAAGTCCCAGCTATATCACTCTTGGG  200

seq1  CATATATCTGAAAAATGCTCCACCATACTGCAAAAACACTTGCTCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCTGAAAAATGCTCCACCATACTGCAAAAACACTTGCTCAACTA  250

seq1  AGTTTTACAGCAGCTTTATTCATAGTAGCCAAAAAACTAGAAACAACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACAGCAGCTTTATTCATAGTAGCCAAAAAACTAGAAACAACCCA  300

seq1  TAGACCCTTCAACCAAATAATGGATAAAGGAAATAAGGTTCATTTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCCTTCAACCAAATAATGGATAAAGGAAATAAGGTTCATTTACACA  350

seq1  GTGAAATACTACTCAGCTATTAAAAACAAGGATACCATGTAATTTATAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATACTACTCAGCTATTAAAAACAAGGATACCATGTAATTTATAGG  400

seq1  TAAATGGATGGAACAAAACAATATCCTGAGTGAGGTAATCCAGATCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGATGGAACAAAACAATATCCTGAGTGAGGTAATCCAGATCCAAA  450

seq1  ATGATATGCATGGCATGTATTCACCTGTAAGTGGATATTAATTATAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGCATGGCATGTATTCACCTGTAAGTGGATATTAATTATAAAGT  500

seq1  ACAGGATTATCATGCTACAATCCACAGACCCAACAGAGCTAAGTGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTATCATGCTACAATCCACAGACCCAACAGAGCTAAGTGACAAG  550

seq1  GAGGGTCCAAGAGAGGATGCTTGAAT  576
      ||||||||||||||||||||||||||
seq2  GAGGGTCCAAGAGAGGATGCTTGAAT  576

seq1: chr18_41755873_41757046
seq2: B6Ng01-254O24.g_70_1273 (reverse)

seq1  AAAAAGGGAAAGTAGCT--AGCTA-GGCATTAGGTA-GCAGAGGAAACAG  46
      |||| ||||||||||||  ||||| ||| ||| ||| ||||| ||| | |
seq2  AAAAGGGGAAAGTAGCTACAGCTAGGGCCTTAAGTAGGCAGA-GAATCCG  49

seq1  GGGCTATG-CTAAATTTACATTTTGAAGAAAA-GTGAAAA-CAGCCTTG-  92
      ||  |||| || |||||||  || | |||||| ||||||| |||||||| 
seq2  GGCTTATGTCTTAATTTACCATTAGTAGAAAAGGTGAAAACCAGCCTTGA  99

seq1  TAGGT-AGAACAGCTGTGA---GGTGAGGTC-AGTTCCACTG-CATCCC-  135
       |||| |||||||||||||    ||  |||| |||||||||| |||||| 
seq2  AAGGTGAGAACAGCTGTGAAAGTGTAGGGTCAAGTTCCACTGCCATCCCA  149

seq1  AGGA-TGCCACA--CAACTGCCACTGC-AATAAATCCTCT-CTAGCATTC  180
      |||| ||| |||   ||||| || ||| ||||||| || | |||||||||
seq2  AGGATTGCTACAACAAACTGGCAATGCAAATAAATGCTTTCCTAGCATTC  199

seq1  CTCTT-GTGCTTGGG-TCATCCACTCAAGTTATAGTGCTCC-AGACGGCA  227
      ||||| ||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CTCTTGGTGCTTGGGTTCATCCACTCAAGTTATAGTGCTCCAAGACGGCA  249

seq1  -GAGC-ATAGATCATGTGATGTCTGAT-AAATTTATG-AAGGCAAG-AAG  272
       |||| ||||||||||||||||||||| ||||||||| ||| |||| |||
seq2  GGAGCAATAGATCATGTGATGTCTGATAAAATTTATGAAAGCCAAGAAAG  299

seq1  GAGGACCTGGCTTCCTTGAATCTGCATTG-AAAGGTAGTTCCCTGGCATC  321
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGGACCTGGCTTCCTTGAATCTGCATTGAAAAGGTAGTTCCCTGGCATC  349

seq1  ATGCTACC-AAAATGCCTCTGGATGTATGT-GGAAAGGAGAATTGCTTCA  369
      |||||||| ||||||||||||||||||||| |||||| ||||||||||||
seq2  ATGCTACCAAAAATGCCTCTGGATGTATGTGGGAAAGAAGAATTGCTTCA  399

seq1  ATGAGAGTGTATCTCTCTCTCATAATCATACAAAAACAAACTAAATAATA  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGTGTATCTCTCTCTCATAATCATACAAAAACAAACTAAATAATA  449

seq1  GCTAGGTGTGTTCACCACCAATCACTGTTCACTGAAACATTCCATGGCAA  469
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTGTGTTCACCACCAATCACTGTTCACTGAAACATTCCATGGCAA  499

seq1  AACTGATATTGTCTCAATGGCTACTTCACTCTTGGTCTGGTTTCTATTGT  519
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATTGTCTCAATGGCTACTTCACTCTTGGTCTGGTTTCTATTGT  549

seq1  TGGGATAAATCACCATACCCAAAAGTAACTTGGGAAGGAAAAGTTTTATT  569
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAATCACCATACCCAAAAGTAACTTGGGAAGGAAAAGTTTTATT  599

seq1  GGGGTTACATGTCACAGTCATAGTTTTTCACTGAGAAAAGTCAGGCCAGG  619
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTACATGTCACAGTCATAGTTTTTCACTGAGAAAAGTCAGGCCAGG  649

seq1  AACTCAAGCAGGGTAGAAACTGGAGGCTAGAACTGATCCAGAGGCCATGG  669
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAGCAGGGTAGAAACTGGAGGCTAGAACTGATCCAGAGGCCATGG  699

seq1  AAGACTGCTACTTACTGGCTTGCTCTCCATGCTTAACCTGCTTTCTTATT  719
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTACTTACTGGCTTGCTCTCCATGCTTAACCTGCTTTCTTATT  749

seq1  TAACTTAGGACCACCTGCCCAGAGGTAGCACCAGCCACCATGGGCTAGGC  769
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGGACCACCTGCCCAGAGGTAGCACCAGCCACCATGGGCTAGGC  799

seq1  CTTCCATACCAATTATTAATAGAGAAAATGCCCTTCAGACTGCCTACAAA  819
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATACCAATTATTAATAGAGAAAATGCCCTTCAGACTGCCTACAAA  849

seq1  AAAATATGATGGCATTTTTTTTCTCAACTGAGGTTTCTCTTCCCAGATAT  869
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGATGGCATTTTTTTTCTCAACTGAGGTTTCTCTTCCCAGATAT  899

seq1  GGTTTAGGTGTATGTCATGCTGACAAAAATTCAAACAAAACAGTCACTGA  919
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGTGTATGTCATGCTGACAAAAATTCAAACAAAACAGTCACTGA  949

seq1  ATTTTGTTCTTGACTAGATCTTCAGGGCTTATTCCATTACTTCCCCATAA  969
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCTTGACTAGATCTTCAGGGCTTATTCCATTACTTCCCCATAA  999

seq1  GTCACAGACGACTTGCACCTATGAATCCTGATGGCAACTTTCCACCCTGC  1019
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACGACTTGCACCTATGAATCCTGATGGCAACTTTCCACCCTGC  1049

seq1  TGTTTTCTTGAAAAGGTGTACCATGTATAAGCTACTGTATCTCTTCTACA  1069
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGAAAAGGTGTACCATGTATAAGCTACTGTATCTCTTCTACA  1099

seq1  TCTTTATATTTCAACATCTGTCTCTTTTCTAAAAATCCAATTCAAAAGCT  1119
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATATTTCAACATCTGTCTCTTTTCTAAAAATCCAATTCAAAAGCT  1149

seq1  TTATCCTGGATCATATTTTCCCTGCCCATATCTATTCTAGAATCTCTCTG  1169
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGGATCATATTTTCCCTGCCCATATCTATTCTAGAATCTCTCTG  1199

seq1  AATTC  1174
      |||||
seq2  AATTC  1204