BAC Information

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BAC

Clone NameB6Ng01-255N03
Chromosome18 (Build37)
Map Location 16,243,476 - 16,244,665
singlet/doubletsinglet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N03.bB6Ng01-255N03.g
ACCGA061934GA061935
length1,2341,165
definitionB6Ng01-255N03.b B6Ng01-255N03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatagctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcacagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccttacctattcatcattg
tatttcaagtcctagccacagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtctaaatatcactttttgcagatgatat
gatagtatatataagtgatcctgaaaattctaacagagaactcctaaaac
tgataaatagcttcggttaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataagcaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaaaaccttggtg
tgactctaaggaagtgaaagatctgtatgataagagcttcaagtctctga
aaaaagacaacattttcaacaaatggtgctggcaccacaggcagttatca
tgtagaagaatgcgaattgatccattcctatctccttgtactaaggtcaa
atctaagtggatcaaggaactccacataaaaccagagacagtgaaactta
tagaggaaaaagtggggaaaagccttaaaaatatgggcacaggggaaaaa
ttcctgaatagaacagcattggcttgcgctgtaagatcgagaattgacaa
ataggacctcataaaattgcaaagcatcttaaggcaaaagacaccatcaa
taagacaaaaagaccactaacagatcgggaaaggatctttacctatccta
aatcagataggggactaatatccaatgtatataaagaactcaagaaagtg
ggatccagaaaatcatataattccatttaaaaaatgggttcagagctaaa
caaagaatttttacctgaggaataccaaatggctgagaagcacctgaaaa
atggtcagcatccttaatctttaggaaatgcaaatcaaaaaaaccctgag
aattccatctcacaccagtcagaatgctaagatcaaaatttcaggtgcag
cagatgctgtgaagattgttgagaatggaaccactccctccattgtgttg
gaatgccaagcctgtacaaccactgctggaatcagtcttggcgcggcttc
tcctccgaaaaattgggagacacacatgatgttc
gaattctataatctccttaatttatagtctggactttattgtagaaagta
gaggttaaagttttagaaataggtatgatgtcagaggagtttcatttcga
tgatagctataacactagctgatctgcaaatcccactctgcaattaccat
gcacactatgtgcttggatattttaatattgcctgtgtatcatagaattt
atgtttactatcaactgggtgaaggaaatgatgttatagtccatgaagtg
ggggcatccattctaacagcaacatacaggttatgtatttcatatgacag
agcaataagatataatacatgtggatctgtatgacttttagggcttctgt
ggatcatagggcctcctgttagtgctatatgatccacacagattcttatg
gaaagagaaagcaacttcactaaaataccattattctgatatcttatatc
acatgaactattaacataatatataaataattttaacttgtcttcaaata
atagtcctaacaatagcttataattatttttgagtatacatcaaatacta
aaaaacaggttaaacactgaattaaaaagaattctaaaactttaaaatat
acgtccagagaaactattgccaattccaaatgtttctgcccctgatgccc
ttaatcttctgaggcttactttgaaaatttagcagtgctagaatgctgag
ctaaagaacaatatataagaaaaggattggctgaagcattttactgacag
cagttttaatatcaattgtaagtgatattgccaattggcaaaagaataaa
atgaaatctagagtcagccttgccctaagaacaattctctcaaatgttga
agttcaaagattatgtagctaacctgaggccatgaacttactttaaaatt
ggaaatggcagttgtactatgagggctaaaaaagtagtttatataatttt
caagctgtgagaagcaattatttttctctagtcagaaaattacactagtg
gtttttcattctgttttcagctatagctccaggttttctttttccagcca
cccactatatatgcagcttgtatattctaatattgggtaaggatggaatg
ttgcaaattctgggtgaatgacttcatgcaagccttgccacatgatggat
tatgacaaggcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16243476_16244665
seq2: B6Ng01-255N03.g_67_1231 (reverse)

seq1  TGGTGCCTTGTTCATAACTCATTCCTTTTGTGGCAAGGCTTCCCATG--G  48
      |||||||||| |||||    || | |  |||||||||||||  ||||  |
seq2  TGGTGCCTTG-TCATA----ATCCATCATGTGGCAAGGCTT-GCATGAAG  44

seq1  ACATTCATCACCAGAATTTTCCACCAATCAATTCTTTACCCAATATTAGA  98
       ||||||   |||||| ||| || || || | || |||||||||||||||
seq2  TCATTCA--CCCAGAA-TTTGCAACATTCCA-TCCTTACCCAATATTAGA  90

seq1  ATATACCAAAGCTGGCAATATTATAAGTTGGGTGGCTTGGAAAAAAAGAA  148
      ||||||  ||||| |||    ||||   ||||||||| |   ||||||||
seq2  ATATAC--AAGCT-GCA----TATATAGTGGGTGGCTGG---AAAAAGAA  130

seq1  AACCTGGAAGCTATTAGCTTGAAAAACAAGAATGAAAAACCACCTAGTGT  198
      ||||||| ||||| |||| ||||||   |||||||||||||| |||||||
seq2  AACCTGG-AGCTA-TAGC-TGAAAA--CAGAATGAAAAACCA-CTAGTGT  174

seq1  AATTTTTCTGACTAGAG-AAAATAATTGCTTTCTCACAGCTTGAAAATTA  247
      || |||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  AA-TTTTCTGACTAGAGAAAAATAATTGC-TTCTCACAGCTTGAAAATTA  222

seq1  TATAAACTACTTTTTTAGCCCTCATAGTACAACTGCCATTTCCAATTTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTACTTTTTTAGCCCTCATAGTACAACTGCCATTTCCAATTTTA  272

seq1  AAGTAAGTTCATGGCCTCAGGTTAGCTACATAATCTTTGAACTTCAACAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTTCATGGCCTCAGGTTAGCTACATAATCTTTGAACTTCAACAT  322

seq1  TTGAGAGAATTGTTCTTAGGGCAAGGCTGACTCTAGATTTCATTTTATTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAATTGTTCTTAGGGCAAGGCTGACTCTAGATTTCATTTTATTC  372

seq1  TTTTGCCAATTGGCAATATCACTTACAATTGATATTAAAACTGCTGTCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCAATTGGCAATATCACTTACAATTGATATTAAAACTGCTGTCAG  422

seq1  TAAAATGCTTCAGCCAATCCTTTTCTTATATATTGTTCTTTAGCTCAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGCTTCAGCCAATCCTTTTCTTATATATTGTTCTTTAGCTCAGCA  472

seq1  TTCTAGCACTGCTAAATTTTCAAAGTAAGCCTCAGAAGATTAAGGGCATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCACTGCTAAATTTTCAAAGTAAGCCTCAGAAGATTAAGGGCATC  522

seq1  AGGGGCAGAAACATTTGGAATTGGCAATAGTTTCTCTGGACGTATATTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCAGAAACATTTGGAATTGGCAATAGTTTCTCTGGACGTATATTTT  572

seq1  AAAGTTTTAGAATTCTTTTTAATTCAGTGTTTAACCTGTTTTTTAGTATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTAGAATTCTTTTTAATTCAGTGTTTAACCTGTTTTTTAGTATT  622

seq1  TGATGTATACTCAAAAATAATTATAAGCTATTGTTAGGACTATTATTTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATACTCAAAAATAATTATAAGCTATTGTTAGGACTATTATTTGA  672

seq1  AGACAAGTTAAAATTATTTATATATTATGTTAATAGTTCATGTGATATAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTAAAATTATTTATATATTATGTTAATAGTTCATGTGATATAA  722

seq1  GATATCAGAATAATGGTATTTTAGTGAAGTTGCTTTCTCTTTCCATAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCAGAATAATGGTATTTTAGTGAAGTTGCTTTCTCTTTCCATAAGA  772

seq1  ATCTGTGTGGATCATATAGCACTAACAGGAGGCCCTATGATCCACAGAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGTGGATCATATAGCACTAACAGGAGGCCCTATGATCCACAGAAG  822

seq1  CCCTAAAAGTCATACAGATCCACATGTATTATATCTTATTGCTCTGTCAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAAGTCATACAGATCCACATGTATTATATCTTATTGCTCTGTCAT  872

seq1  ATGAAATACATAACCTGTATGTTGCTGTTAGAATGGATGCCCCCACTTCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACATAACCTGTATGTTGCTGTTAGAATGGATGCCCCCACTTCA  922

seq1  TGGACTATAACATCATTTCCTTCACCCAGTTGATAGTAAACATAAATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTATAACATCATTTCCTTCACCCAGTTGATAGTAAACATAAATTCT  972

seq1  ATGATACACAGGCAATATTAAAATATCCAAGCACATAGTGTGCATGGTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACACAGGCAATATTAAAATATCCAAGCACATAGTGTGCATGGTAA  1022

seq1  TTGCAGAGTGGGATTTGCAGATCAGCTAGTGTTATAGCTATCATCGAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGTGGGATTTGCAGATCAGCTAGTGTTATAGCTATCATCGAAAT  1072

seq1  GAAACTCCTCTGACATCATACCTATTTCTAAAACTTTAACCTCTACTTTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCTCTGACATCATACCTATTTCTAAAACTTTAACCTCTACTTTC  1122

seq1  TACAATAAAGTCCAGACTATAAATTAAGGAGATTATAGAATTC  1190
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAAGTCCAGACTATAAATTAAGGAGATTATAGAATTC  1165