BAC Information

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BAC

Clone NameB6Ng01-255N19
Chromosome18 (Build37)
Map Location 28,359,784 - 28,506,154
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665646, EG271505
Downstream geneEG625997, BC051408, LOC100040930
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255N19.bB6Ng01-255N19.g
ACCGA061966GA061967
length1,0171,153
definitionB6Ng01-255N19.b B6Ng01-255N19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,505,636 - 28,506,154)(28,359,784 - 28,360,942)
sequence
gaattctatggcacttcaacatttatcacataaccaaaagattttggggg
tagaatttctatttgaatagttgagaaataaacagtatatttttcttctt
cattttttaactttaaaatccagattttatttccctcctggtccatcctc
tgactgttccacattgtatacctcctccctgcccaccctccctgtctcca
caaggatgtccccaacccccaccccaccagatctctagactccctatggc
ctccagtctcttgagggttaggtgcatcttctctggctaaagccagatct
ggcagttctctgctatatatgtgttgggggcctcatatcagttagtgtat
gctgtctggtttgtattccagtatctaagggttctcgggggtcagattaa
ttgagactgctagtagtcctaccgggttgccctcttcctcaacttcttcc
aactttcccctaattcaactgcagaggttagcagcttctccattggttgg
gtacaaatatctgcatctgatgctttcagctgcttattgggtcttttgga
gggcagttatgatagatcctttctagtgagcactccatagcttctgtaat
agtgtaaggtctttgggcctccccttgagctggattctactttgggcctg
tcgctggaccttcatttcctcagactcctctccatttccatcactggagt
tctttcagaaggaataattatgggtcagagttttgactgtgtgatggcaa
gcccatccatcacttgatgccctgtctttctgctggaggtgggccctaca
agtttcctctttccaatgcagggtattttatctaaaggtctgtctccttt
gagtcttgagagtctctcaccttacatatctctggtacattctgggaggg
tccccacaacattctaactccctcccgaggttacatgtttccatttcttt
ctgctggccctcagggattcagtccttttcctctcccaatacccgatatg
ttccctctccatttccc

gaattcaaagagacaccagggtttacatatagattaatatatattcatgc
attctcagtcacatcactgttaggcaattttgtttcacagataattcttt
tctgagttttgtataaggattgtttgaaggaattcctctcttctctacgg
ccccaaacagtagagtctgactaagagtagggttttatgatttgactgtg
gagctctttctgggtgagaaaagggactggaaatggttcttgtgaatctt
ttgtttgcttgttttctactaaagtaacccaaaatgtgaggaatgaatga
ttcattgtttgagtctgtttttttttctatgaagacttcatctttgagga
cagttcaggacttactctccatttttttttatgcacatggctctaaaacc
atatagtatgatttctaaagaaaatcttcatatgatatggaactttgaag
aatttgatactgatttttttagagtataccaataaacacaatttagaaaa
taaaatttccttgaatttattttcattgagtttaaagttatacatacaca
tacataaatgaaatggttttaaaattattacaaaataaggacattgtttt
ttaatactataagtatctaagacatattttacacaaatcagtttagaaat
gtaccaaaattcaagatgaaaaccagaatcaatatttaacaaaatacgtt
catccttattttttattttctgtaattattggtttattttctggttcatc
aatattatctaaaataatattatacataaattaagctccattttcatttt
ttgagtatacatttttccataaacttctacaaagttcacctcatatgagc
tagcattacatttgcttaatgtttaagactcttaaaactgtgagactctg
ttttaataattgtcttgaataaccattgattcaataacaatgctcctcat
agcacttcagattgtcaccatagtatttgtgtgacttaaatcataagtag
tgccaaattgttctattcaagaagattattcattgaatacatagaaacct
atgaaacttaagatttgccttgtcaatatttctatatctagcagataaat
cttttgggttgtacatttgcaataaaaacattttctaagttgctctttag
aaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28505636_28506154
seq2: B6Ng01-255N19.b_46_564 (reverse)

seq1  CAGATGCAGATATTTGTACCCAACCAATGGAGAAGCTGCTAACCTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCAGATATTTGTACCCAACCAATGGAGAAGCTGCTAACCTCTGCA  50

seq1  GTTGAATTAGGGGAAAGTTGGAAGAAGTTGAGGAAGAGGGCAACCCGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTAGGGGAAAGTTGGAAGAAGTTGAGGAAGAGGGCAACCCGGTA  100

seq1  GGACTACTAGCAGTCTCAATTAATCTGACCCCCGAGAACCCTTAGATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACTAGCAGTCTCAATTAATCTGACCCCCGAGAACCCTTAGATACT  150

seq1  GGAATACAAACCAGACAGCATACACTAACTGATATGAGGCCCCCAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACAAACCAGACAGCATACACTAACTGATATGAGGCCCCCAACACA  200

seq1  TATATAGCAGAGAACTGCCAGATCTGGCTTTAGCCAGAGAAGATGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCAGAGAACTGCCAGATCTGGCTTTAGCCAGAGAAGATGCACCT  250

seq1  AACCCTCAAGAGACTGGAGGCCATAGGGAGTCTAGAGATCTGGTGGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCAAGAGACTGGAGGCCATAGGGAGTCTAGAGATCTGGTGGGGTG  300

seq1  GGGGTTGGGGACATCCTTGTGGAGACAGGGAGGGTGGGCAGGGAGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGGGACATCCTTGTGGAGACAGGGAGGGTGGGCAGGGAGGAGGT  350

seq1  ATACAATGTGGAACAGTCAGAGGATGGACCAGGAGGGAAATAAAATCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGTGGAACAGTCAGAGGATGGACCAGGAGGGAAATAAAATCTGG  400

seq1  ATTTTAAAGTTAAAAAATGAAGAAGAAAAATATACTGTTTATTTCTCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGTTAAAAAATGAAGAAGAAAAATATACTGTTTATTTCTCAAC  450

seq1  TATTCAAATAGAAATTCTACCCCCAAAATCTTTTGGTTATGTGATAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAATAGAAATTCTACCCCCAAAATCTTTTGGTTATGTGATAAATG  500

seq1  TTGAAGTGCCATAGAATTC  519
      |||||||||||||||||||
seq2  TTGAAGTGCCATAGAATTC  519


seq1: chr18_28359784_28360942
seq2: B6Ng01-255N19.g_70_1222

seq1  GAATTCAAAGAGACACCAGGGTTTACATATAGATTAATATATATTCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGACACCAGGGTTTACATATAGATTAATATATATTCATGC  50

seq1  ATTCTCAGTCACATCACTGTTAGGCAATTTTGTTTCACAGATAATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGTCACATCACTGTTAGGCAATTTTGTTTCACAGATAATTCTTT  100

seq1  TCTGAGTTTTGTATAAGGATTGTTTGAAGGAATTCCTCTCTTCTCTACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTTGTATAAGGATTGTTTGAAGGAATTCCTCTCTTCTCTACGG  150

seq1  CCCCAAACAGTAGAGTCTGACTAAGAGTAGGGTTTTATGATTTGACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACAGTAGAGTCTGACTAAGAGTAGGGTTTTATGATTTGACTGTG  200

seq1  GAGCTCTTTCTGGGTGAGAAAAGGGACTGGAAATGGTTCTTGTGAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTTCTGGGTGAGAAAAGGGACTGGAAATGGTTCTTGTGAATCTT  250

seq1  TTGTTTGCTTGTTTTCTACTAAAGTAACCCAAAATGTGAGGAATGAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTTGTTTTCTACTAAAGTAACCCAAAATGTGAGGAATGAATGA  300

seq1  TTCATTGTTTGAGTCTGTTTTTTTTTCTATGAAGACTTCATCTTTGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTTGAGTCTGTTTTTTTTTCTATGAAGACTTCATCTTTGAGGA  350

seq1  CAGTTCAGGACTTACTCTCCATTTTTTTTTATGCACATGGCTCTAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCAGGACTTACTCTCCATTTTTTTTTATGCACATGGCTCTAAAACC  400

seq1  ATATAGTATGATTTCTAAAGAAAATCTTCATATGATATGGAACTTTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTATGATTTCTAAAGAAAATCTTCATATGATATGGAACTTTGAAG  450

seq1  AATTTGATACTGATTTTTTTAGAGTATACCAATAAACACAATTTAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATACTGATTTTTTTAGAGTATACCAATAAACACAATTTAGAAAA  500

seq1  TAAAATTTCCTTGAATTTATTTTCATTGAGTTTAAAGTTATACATACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTCCTTGAATTTATTTTCATTGAGTTTAAAGTTATACATACACA  550

seq1  TACATAAATGAAATGGTTTTAAAATTATTACAAAATAAGGACATTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAATGAAATGGTTTTAAAATTATTACAAAATAAGGACATTGTTTT  600

seq1  TTAATACTATAAGTATCTAAGACATATTTTACACAAATCAGTTTAGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTATAAGTATCTAAGACATATTTTACACAAATCAGTTTAGAAAT  650

seq1  GTACCAAAATTCAAGATGAAAACCAGAATCAATATTTAACAAAATACGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAATTCAAGATGAAAACCAGAATCAATATTTAACAAAATACGTT  700

seq1  CATCCTTATTTTTTATTTTCTGTAATTATTGGTTTATTTTCTGGTTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTATTTTTTATTTTCTGTAATTATTGGTTTATTTTCTGGTTCATC  750

seq1  AATATTATCTAAAATAATATTATACATAAATTAAGCTCCATTTTCATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCTAAAATAATATTATACATAAATTAAGCTCCATTTTCATTTT  800

seq1  TTGAGTATACA-TTTTCCATAAACTTCTACAAAGTTCACCTCATATGAGC  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATACATTTTTCCATAAACTTCTACAAAGTTCACCTCATATGAGC  850

seq1  TAGCATTACATTTGCTTAATGTTTAAGACTCTTAAAACTGTGAGACTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTACATTTGCTTAATGTTTAAGACTCTTAAAACTGTGAGACTCTG  900

seq1  TTTTAATAATTGTCTTGAATAA-CATTGATTCAATAACAATGCTCCTCAT  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTTAATAATTGTCTTGAATAACCATTGATTCAATAACAATGCTCCTCAT  950

seq1  AGCACTTCAGATTGTCA-CATAGTATTTGTGTGACTTAAATCATAAGTAG  997
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCACTTCAGATTGTCACCATAGTATTTGTGTGACTTAAATCATAAGTAG  1000

seq1  TGCCAAATTGTTCTATTC-AGAAGA-TATTCATTGAATACATAGAAACTA  1045
      |||||||||||||||||| |||||| ||||||||||||||||||||||  
seq2  TGCCAAATTGTTCTATTCAAGAAGATTATTCATTGAATACATAGAAACCT  1050

seq1  TTGAAAACTAAGATTTGCCTTGTCAATATTTCTATAATCTAAGGAAAGAT  1095
       |||||  ||||||||||||||||||||||||||| |||||     ||| 
seq2  ATGAAACTTAAGATTTGCCTTGTCAATATTTCTAT-ATCTA---GCAGA-  1095

seq1  TAGATCTTTTGGTCTGTTACATTTTGGCCAATTAAAACA-TTTCTATAGT  1144
      || |||||||||  || |||||||    |||| |||||| |||||| |||
seq2  TAAATCTTTTGGGTTG-TACATTT---GCAATAAAAACATTTTCTA-AGT  1140

seq1  TGCCTTCTTTAGAAA  1159
      |||  ||||||||||
seq2  TGC--TCTTTAGAAA  1153


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