BAC Information

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BAC

Clone NameB6Ng01-256B07
Chromosome9 (Build37)18 (Build37)
Map Location 66,058,207 - 66,059,19864,716,963 - 64,717,002
singlet/doubletsingletsinglet
Overlap geneDapk2
Upstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256B07.bB6Ng01-256B07.g
ACCGA062130GA062131
length99697
definitionB6Ng01-256B07.b B6Ng01-256B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,058,207 - 66,059,198)(64,716,963 - 64,717,002)
sequence
gaattccttagccattaacccggcacacgagggcagtggagaggagagaa
tggtaagctgcaggtagcctgtgctacaggacaagaatgtcttgggcatt
agcattcagtgtacaggactgggatataggtggatgtgcttgcaccagtg
acaaaaactaaaaccaaccaaacaaccaaaatctccagaagaaagtgggt
tgtgatctgagtacaccgacacacacattcacatttgggttgtgatctga
gcacaccgacacacacaggcacatctacccagggtgagttttgggagtgt
agaacctttgtctctaagtagtttctttacttgcccaatgtttgcctaag
cttgttactaatttttttttaagtcattaaaatgtgaacatgttactcag
agaagggattaggttaactctttggagtctcctgtcaaattatatgcagt
gtggaagaattgaagggttttccagagagcctgcctgcatgagaggggag
ggtgtgcaggttgggagggaggtattcaagaagataaactgagtgtgtta
gcatttaaggagagatgaccttatattccacagcaacaggcaaagtatcc
tggattttccatcttttctttgaagtcttttgctttctttaaatctgttg
ctgttgttgtttatggggtgggctatagccacagcacacacgtgggtgtc
agcagacaactgtgcagcagttggttctcctccttccaacgaggagattc
tggggttcaaactcaggtcaccatgtacactgagtcagcccatcggacct
ctgtcctttccatcctggacagcccgagctcacatttaaagatctattct
gtatggactagtctgtaaactctaagggaactttgagtgagggctgagct
aagttttcaatgaaatatctccctatatagtcaagtctaatgtgggactg
ggcctatttttattttaggacttgtgttctggtgcctcttcccctc
aaagccagcctggtgtacagagctagttccaggatagctagggctacatg
gagaaaaacacatacaaagaaaaaaagaaagggagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66058207_66059198
seq2: B6Ng01-256B07.b_49_1044

seq1  GAATTCCTTAGCCATTAACCCGGCACACGAGGGCAGTGGAGAGGAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCCATTAACCCGGCACACGAGGGCAGTGGAGAGGAGAGAA  50

seq1  TGGTAAGCTGCAGGTAGCCTGTGCTACAGGACAAGAATGTCTTGGGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGCTGCAGGTAGCCTGTGCTACAGGACAAGAATGTCTTGGGCATT  100

seq1  AGCATTCAGTGTACAGGACTGGGATATAGGTGGATGTGCTTGCACCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAGTGTACAGGACTGGGATATAGGTGGATGTGCTTGCACCAGTG  150

seq1  ACAAAAACTAAAACCAACCAAACAACCAAAATCTCCAGAAGAAAGTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTAAAACCAACCAAACAACCAAAATCTCCAGAAGAAAGTGGGT  200

seq1  TGTGATCTGAGTACACCGACACACACATTCACATTTGGGTTGTGATCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCTGAGTACACCGACACACACATTCACATTTGGGTTGTGATCTGA  250

seq1  GCACACCGACACACACAGGCACATCTACCCAGGGTGAGTTTTGGGAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCGACACACACAGGCACATCTACCCAGGGTGAGTTTTGGGAGTGT  300

seq1  AGAACCTTTGTCTCTAAGTAGTTTCTTTACTTGCCCAATGTTTGCCTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTTTGTCTCTAAGTAGTTTCTTTACTTGCCCAATGTTTGCCTAAG  350

seq1  CTTGTTACTAATTTTTTTTTAAGTCATTAAAATGTGAACATGTTACTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACTAATTTTTTTTTAAGTCATTAAAATGTGAACATGTTACTCAG  400

seq1  AGAAGGGATTAGGTTAACTCTTTGGAGTCTCCTGTCAAATTATATGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGATTAGGTTAACTCTTTGGAGTCTCCTGTCAAATTATATGCAGT  450

seq1  GTGGAAGAATTGAAGGGTTTTCCAGAGAGCCTGCCTGCATGAGAGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAATTGAAGGGTTTTCCAGAGAGCCTGCCTGCATGAGAGGGGAG  500

seq1  GGTGTGCAGGTTGGGAGGGAGGTATTCAAGAAGATAAACTGAGTGTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCAGGTTGGGAGGGAGGTATTCAAGAAGATAAACTGAGTGTGTTA  550

seq1  GCATTTAAGGAGAGATGACCTTATATTCCACAGCAACAGGCAAAGTATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAAGGAGAGATGACCTTATATTCCACAGCAACAGGCAAAGTATCC  600

seq1  TGGATTTTCCATCTTTTCTTTGAAGTCTTTTGCTTTCTTTAAATCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTTCCATCTTTTCTTTGAAGTCTTTTGCTTTCTTTAAATCTGTTG  650

seq1  CTGTTGTTGTTTATGGGGTGGGCTATAGCCACAGCACACACGTGGGTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTGTTTATGGGGTGGGCTATAGCCACAGCACACACGTGGGTGTC  700

seq1  AGCAGACAACTGTGCAGCAGTTGGTTCTCCTCCTTCCAACGAGGAGATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACAACTGTGCAGCAGTTGGTTCTCCTCCTTCCAACGAGGAGATTC  750

seq1  TGGGGTTCAAACTCAGGTCACCATGTACACTGAGTCAGCCCATCGGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCAAACTCAGGTCACCATGTACACTGAGTCAGCCCATCGGACCT  800

seq1  CTGTCCTTTCCATCCTGGACAGCCCGAGCTCACATTTAAAGATCTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTCCATCCTGGACAGCCCGAGCTCACATTTAAAGATCTATTCT  850

seq1  GTATGGACTAGTCTGTAAACTCTAAGGGAACTTTGAGTGAGGGCTGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGACTAGTCTGTAAACTCTAAGGGAACTTTGAGTGAGGGCTGAGCT  900

seq1  AAGTTTTCAATGAAAATATCTCCCTATATAGTCAAGTCTAATGT-GGACT  949
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  AAGTTTTCAATG-AAATATCTCCCTATATAGTCAAGTCTAATGTGGGACT  949

seq1  GGGCCTA-TTTTATTTTAGGACTTGTG-TCT-GTGCCTC-TCCCCTC  992
      ||||||| ||||||||||||||||||| ||| ||||||| |||||||
seq2  GGGCCTATTTTTATTTTAGGACTTGTGTTCTGGTGCCTCTTCCCCTC  996

seq1: chr18_64716963_64717002
seq2: B6Ng01-256B07.g_121_166 (reverse)

seq1  CTCCCTCCCTCCCTCCCTTTCTTTCTTTTTT------TTTTTTTCT  40
      |||||||||||||||||||||||| ||| ||      | |||||||
seq2  CTCCCTCCCTCCCTCCCTTTCTTTTTTTCTTTGTATGTGTTTTTCT  46