BAC Information

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BAC

Clone NameB6Ng01-256E01
Chromosome18 (Build37)X (Build37)
Map Location 69,083,351 - 69,084,128116,467,746 - 116,467,820
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneD18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256E01.bB6Ng01-256E01.g
ACCGA062260GA062261
length778314
definitionB6Ng01-256E01.b B6Ng01-256E01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,083,351 - 69,084,128)(116,467,746 - 116,467,820)
sequence
gaattctctcctttagcttcatcttggtaatattctactcaggaatacac
taccactgtttccagggtaaatatcattctttgtatctgatactctcttc
cttaagagaagttgtccttaaggtagtaagctgtcttctggcatgcagcc
caggaagcactaagtatgtggaaagccagaaggcaagggagactcaccta
ttgagaaatgattaaaataccagatcgatgtgggtgaaaacaaaataaat
aaacaaacaaacaaacaaaaacaaaataaagggattgctttccaaacaat
tcaggatagctctgctttgattttccaagtgtagactaatagcttaacat
gcaaaagacaatcttagttctctccttttcgaaatcttcatataaggaag
tagtgagaggggattacactgttgactactatggtaatgcacaagtatta
aggcatgagacatgttttaagcacaagtccttgggaaggtagcattccca
ggagtgaggagttcaggcttttgaactctcaatgaaatccaagctttctc
ccttttctattgtgggccactagaccttcaaatgaccctcttaacttcat
ccctaaaacaatgtcgttgtttgaataagaatgtccctcagagtctcctg
tatttgcatgcttactccctcagttggcaactctttggaagagttaggag
gtgtggttttcttgaagaaggggtagacttagaggctcgctctctctctc
tctctctctctctctctctctctctctc

tcagagcttgctgacaagccagttagctggtgggtaagctctggctttag
ggagagaccttatctcaaaacataaggtggcaaataataaagaaagctac
ctgtagggaacattgacatcttcttctcccacacatagactcacacagct
ctatagacatgtacactaacatatataacacacacacacacacacacaca
catacacatgcatgaacatgtgtgtttgtgtgtgtgagtgtgtggggaga
gagagagagagagacacccgcgcagagtgagagagagagacagagagaga
tatagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_69083351_69084128
seq2: B6Ng01-256E01.b_44_821

seq1  GAATTCTCTCCTTTAGCTTCATCTTGGTAATATTCTACTCAGGAATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTTAGCTTCATCTTGGTAATATTCTACTCAGGAATACAC  50

seq1  TACCACTGTTTCCAGGGTAAATATCATTCTTTGTATCTGATACTCTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGTTTCCAGGGTAAATATCATTCTTTGTATCTGATACTCTCTTC  100

seq1  CTTAAGAGAAGTTGTCCTTAAGGTAGTAAGCTGTCTTCTGGCATGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGAAGTTGTCCTTAAGGTAGTAAGCTGTCTTCTGGCATGCAGCC  150

seq1  CAGGAAGCACTAAGTATGTGGAAAGCCAGAAGGCAAGGGAGACTCACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCACTAAGTATGTGGAAAGCCAGAAGGCAAGGGAGACTCACCTA  200

seq1  TTGAGAAATGATTAAAATACCAGATCGATGTGGGTGAAAACAAAATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAATGATTAAAATACCAGATCGATGTGGGTGAAAACAAAATAAAT  250

seq1  AAACAAACAAACAAACAAAAACAAAATAAAGGGATTGCTTTCCAAACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAAACAAAATAAAGGGATTGCTTTCCAAACAAT  300

seq1  TCAGGATAGCTCTGCTTTGATTTTCCAAGTGTAGACTAATAGCTTAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGCTCTGCTTTGATTTTCCAAGTGTAGACTAATAGCTTAACAT  350

seq1  GCAAAAGACAATCTTAGTTCTCTCCTTTTCGAAATCTTCATATAAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGACAATCTTAGTTCTCTCCTTTTCGAAATCTTCATATAAGGAAG  400

seq1  TAGTGAGAGGGGATTACACTGTTGACTACTATGGTAATGCACAAGTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGAGGGGATTACACTGTTGACTACTATGGTAATGCACAAGTATTA  450

seq1  AGGCATGAGACATGTTTTAAGCACAAGTCCTTGGGAAGGTAGCATTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAGACATGTTTTAAGCACAAGTCCTTGGGAAGGTAGCATTCCCA  500

seq1  GGAGTGAGGAGTTCAGGCTTTTGAACTCTCAATGAAATCCAAGCTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGGAGTTCAGGCTTTTGAACTCTCAATGAAATCCAAGCTTTCTC  550

seq1  CCTTTTCTATTGTGGGCCACTAGACCTTCAAATGACCCTCTTAACTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTATTGTGGGCCACTAGACCTTCAAATGACCCTCTTAACTTCAT  600

seq1  CCCTAAAACAATGTCGTTGTTTGAATAAGAATGTCCCTCAGAGTCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAACAATGTCGTTGTTTGAATAAGAATGTCCCTCAGAGTCTCCTG  650

seq1  TATTTGCATGCTTACTCCCTCAGTTGGCAACTCTTTGGAAGAGTTAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATGCTTACTCCCTCAGTTGGCAACTCTTTGGAAGAGTTAGGAG  700

seq1  GTGTGGTTTTCTTGAAGAAGGGGTAGACTTAGAGGCTCGCTCTCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTTTCTTGAAGAAGGGGTAGACTTAGAGGCTCGCTCTCTCTCTC  750

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTC  778
      ||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTC  778


seq1: chrX_116467746_116467820
seq2: B6Ng01-256E01.g_290_386

seq1  ATGTGTGTTTGTGTGTGTGA------AGGGAGAGAGAGAGAGAGAGA---  41
      ||||||||||||||||||||       ||||||||||||||||||||   
seq2  ATGTGTGTTTGTGTGTGTGAGTGTGTGGGGAGAGAGAGAGAGAGAGACAC  50

seq1  -----------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA--  75
                 |||||||||||| ||||||||| | |||||||||  
seq2  CCGCGCAGAGTGAGAGAGAGAGACAGAGAGAGATATAGAGAGAGAGA  97


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