BAC Information

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BAC

Clone NameB6Ng01-256E21
Chromosome18 (Build37)
Map Location 19,783,356 - 19,784,111
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256E21.bB6Ng01-256E21.g
ACCGA062298GA062299
length1,1041,070
definitionB6Ng01-256E21.b B6Ng01-256E21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggggactcttgagaggagaaagtggtaaagatcttttcccaat
ctgttggctgccttttttgtcctactctgtcctttgccttacagaagctt
tgcaattttatggggtcccatttgtcaatacttgatcttagagcataagc
tattggtgtttgcttcaggaaaatttcccctatgcccatgtgcttgagtc
tccatttggacttgaactttgtatgaggagataagaatggattgatttgc
attcttctacatgctaaccgccagttgaaccatcaccatttgttgaaaat
gctgtcttttttacactggatagttttagctcctttgtcaaaaatcaagt
gaccacaggtgtgtgggttcatttctgggtcataaattctagtccattga
tctacctgcctgtcactgcaccaataccatgctggttttatcatgattgt
tctatagtacagcttgagatcagggatggtgatttccccagaagttcttt
tattgttgagaatagttttcactatcctgggtttttttgttattccaaat
gaatttgtaaattgcactttctaactctatgaagattgcattgaatctgt
agattgcttttggcaagatggccatttttactatattaatcctgccaatc
catgagcatggggaatctttccatcttctgagatctttttagatttcttt
cttcagagacttgaagtttttgtcacaccaatatttttatattatttgtg
actattgtgaaaggtaatgtttacctaatttctttctcagcctgtttatc
tttgagtagaggaaggccactgatttgtttgaagtggaggcttttcccct
gctgttgctgtccctgctaccctggctgccactgttgctgctgtggctgg
ttgctgctgttcctgggtatagattggcctatatcctaaaagaaaaaaaa
ttaaactttgccccaaggaacttgatacctccctaatcagtaggaggtag
ttctgaaagaatcgatgcctcccttttcctgtctaatacttctttttctc
ctaactaatttttttggggaatgaagttataggcctgtgttaggaagtca
gaaa
gaattcattgatgttgagaaatatcaatgagcaatgattattagttcctt
ttatcttgatgttatcatcatcatccttatcatcatcatgttccttcttt
cagctttgcttctatgaaattatttatttcctgtgtattcttggatgtag
ttaacctctttgggttggagtttccttcctagtatcttctgtagggcaaa
atttatggatagatattgtttaaattttcttttgttatgtaatattttgt
tttcttcatctttggtaattgaaagattgctggatagagtattctgggct
ggcatctgcagtcttttagagactacaagatatctttccaggcccgtttg
gtttttaaagtctctattgaaaagtcaggtggaattctaatagttccacc
atttatgttacttggactctttctcttataacttttaatattatttcatt
gctatatagtattttgattattatgtgggagggtttttctgtttgtttgt
tgccaaatctatatggtattctataattttcttgtatgtttatagtcatt
tctttctttaggttagaaaaactttcttctatgattttgctgaagtaatt
ttttgggcatttgagctggaatattccaaatagtcttaagtttggtgttt
ttatagtgttccaaattttctgaatgatttgcattgaacttttcatactt
agcatttactttgtttggtgcatcacagttttttttattgtcatatcttc
tatggctgaggttctttcttccatctcttgaattttgttggtaatgcttg
catctgtagtttttgctaacttccctagattttccatcccccatgatttt
gtcagttagtgttttctttattgcttctattgccattttcattcttgaac
agcttcattaattaaatttatctgttgggttgtatttcccatacatcctt
aagggaatttatttcatttcctctttaaggacctctatccatcttcatca
gcctttgaatcaagggtaattttctgtggcctctacctattgtttacaat
tcatcccagagtctgtacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_19783356_19784111
seq2: B6Ng01-256E21.b_382_1150

seq1  TGTCAAAAATCAAGTGACCACAGGTGTGTGGGTTCATTTCTGGGTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAATCAAGTGACCACAGGTGTGTGGGTTCATTTCTGGGTCATAA  50

seq1  ATTCTAGTCCATTGATCTACCTGCCTGTCACTGCACCAATACCATGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTCCATTGATCTACCTGCCTGTCACTGCACCAATACCATGCTGG  100

seq1  TTTTATCATGATTGTTCTATAGTACAGCTTGAGATCAGGGATGGTGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATGATTGTTCTATAGTACAGCTTGAGATCAGGGATGGTGATTT  150

seq1  CCCCAGAAGTTCTTTTATTGTTGAGAATAGTTTTCACTATCCTGGGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAGTTCTTTTATTGTTGAGAATAGTTTTCACTATCCTGGGTTTT  200

seq1  TTTGTTATTCCAAATGAATTTGTAAATTGCACTTTCTAACTCTATGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTCCAAATGAATTTGTAAATTGCACTTTCTAACTCTATGAAGA  250

seq1  TTGCATTGAATCTGTAGATTGCTTTTGGCAAGATGGCCATTTTTACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGAATCTGTAGATTGCTTTTGGCAAGATGGCCATTTTTACTATA  300

seq1  TTAATCCTGCCAATCCATGAGCATGGGGAATCTTTCCATCTTCTGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTGCCAATCCATGAGCATGGGGAATCTTTCCATCTTCTGAGATC  350

seq1  TTTTTAGATTTCTTTCTTCAGAGACTTGAAGTTTTTGTCACACCAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGATTTCTTTCTTCAGAGACTTGAAGTTTTTGTCACACCAATATT  400

seq1  TTTATATTATTTGTGACTATTGTGAAAGGTAATGTTTACCTAATTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATTTGTGACTATTGTGAAAGGTAATGTTTACCTAATTTCTTT  450

seq1  CTCAGCCTGTTTATCTTTGAGTAGAGGAAGGCCACTGATTTGTTTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTGTTTATCTTTGAGTAGAGGAAGGCCACTGATTTGTTTGAAGT  500

seq1  GGAGGCTTTTCCCCTGCTGTTGCTGTCCCTGCTACCCTGGCTGCCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTTTTCCCCTGCTGTTGCTGTCCCTGCTACCCTGGCTGCCACTGT  550

seq1  TGCTGCTGTGGCTGGTTGCTGCTGTTCCTGGGTATAGATTGG-CTATATC  599
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTGCTGTGGCTGGTTGCTGCTGTTCCTGGGTATAGATTGGCCTATATC  600

seq1  CTAAA--GAAAAAAATTAAAC-TTGCCCCAAGGAACTTGATAC--TCCTA  644
      |||||   ||||||||||||| |||||||||||||||||||||   ||||
seq2  CTAAAAGAAAAAAAATTAAACTTTGCCCCAAGGAACTTGATACCTCCCTA  650

seq1  ATCAGTAGGAGGTAG-TCTGAAAG-ATCGATG-CTCCC-TTTCCTGTCT-  689
      ||||||||||||||| |||||||| ||||||| ||||| |||||||||| 
seq2  ATCAGTAGGAGGTAGTTCTGAAAGAATCGATGCCTCCCTTTTCCTGTCTA  700

seq1  ATACTTC-TTTTCTCCTACCTA--TTTTTTGGGGATGGAAAGTATAGGGC  736
      ||||||| |||||||||| |||  |||||||||||  |||  |||||| |
seq2  ATACTTCTTTTTCTCCTAACTAATTTTTTTGGGGAATGAAGTTATAGGCC  750

seq1  TGGTGTAGGGAAGTCAGAAA  756
      | ||||  ||||||||||||
seq2  T-GTGTTAGGAAGTCAGAAA  769