BAC Information

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BAC

Clone NameB6Ng01-258B02
Chromosome18 (Build37)
Map Location 16,264,171 - 16,265,331
singlet/doubletsinglet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258B02.bB6Ng01-258B02.g
ACCGA063601GA063602
length1,1521,190
definitionB6Ng01-258B02.b B6Ng01-258B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagtgccaacaaacatatctacaactaacatatctacaactaac
atatctacaactaacatatctacaatccaactcttgctgctaaggctgag
gaataatcttagaagagccagaggggaaatcaaaaaggttttcttgagat
agcatttacaagtaatgtcagaaggttcacccataaattatcacaaacat
gactgcctaaacatgaactgaataagcacagcaataatatacatggtatt
gtggccaaaaaatatctcaggaggccttaactctacagaaataaaacaaa
ccaaacatacaaaaagaaactcctaaagacaagtgaggaatgtattcaat
gggagaaataatcttcaacagggatgggtacaccaatccaatgccacgtg
gtcaggtttaagtacataattacaaatagcattataatactgaggagatt
atactcagatacttaggaatatatagatattttctttaacaaattcaaag
aaatatttatcttttattaaatttgggaggttggtccaaactaaatgcca
tacattaattaataaaaattgaaaaatttcaaatattggttttctagatt
agaatttataaggggtatcaggatgggcagagtaagtatttaaactgcca
ttttagttctttcctatttttttaacttaaaaaaaacctttttaccaatg
atataaggaaactttatacttaaagtacttcagcagaacacaacagcaag
aattttgtagaaagcttggggaccaaacataccaccgacaatgagatcat
actaaaagtttactgtaatatttaaggaaataaagtttatcgtctcaaat
agaaatccagagattatgcagcaatcctgaggatgatgctcagtgctttc
tatcattccaactcccggattcattctcacctcatactccaagccacatt
ttaaattttccttccaaaataagacaatatgtagatgggaaaactttcaa
ttctctttttttgtagaaaaagcttttgctatctgctttttataaccaat
gtcattactatttatatggaaccacatggtttattcaatctatggcatta
tataataactaagttagctgaaatagcaaatcagtattagactagataca
tt

gaattcaaggcccatagctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcacagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccttacctattcatcattg
tatttcaagtcctagccacagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtctaaatatcactttttgcagatgatat
gatagtatatataagtgatcctgaaaattctaacagagaactcctaaaac
tgataaatagcttcggttaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataagcaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaaaaccttggtg
tgactctaaggaagtgaaagatctgtatgataagagcttcaagtctctga
aaaaagacaacattttcaacaaatggtgctggcaccacaggcagttatca
tgtagaagaatgcgaattgatccattcctatctccttgtactaaggtcaa
atctaagtggatcaaggaactccacataaaaccagagacagtgaaactta
tagaggaaaaagtggggaaaagccttaaaaatatgggcacaggggaaaaa
ttcctgaatagaacagcattggcttgcgctgtaagatcgagaattgacaa
ataggacctcataaaattgcaaagcatcttaaggcaaaagacaccatcaa
taagacaaaaagaccactaacagatcgggaaaggatctttacctatccta
aatcagataggggactaatatccaatgtatataaagaactcaagaaagtg
ggatccagaaaatcatataatttccatttaaaaatgggttcagagctaaa
caaagaatttttaccctgagaataccaaatggctgaagaagcacctgaaa
aaatggtcagcatccttatctttagggcaatgcaatcaaaaaaccttgag
attccatctcacacagtcagaatgctaagatcaaaattcaagtgcagcag
aatgctggtgaggaatgtgggagaggacccttctctcatgtggttggatt
gcaacgcttgtgtaacaaacatacacactctctggtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16264171_16265331
seq2: B6Ng01-258B02.b_46_1197 (reverse)

seq1  AATGTATCTAGTCTTAATTATTTTATTTGCTATTTCAAGCCTAAAATTTT  50
      ||||||||||||| ||||    | |||||||||||||   ||||    ||
seq2  AATGTATCTAGTC-TAAT--ACTGATTTGCTATTTCA--GCTAA---CTT  42

seq1  AATTATTATAATTATGGCATAGATGGATTAAAACCATGTGG-TCCATATA  99
      | ||||||| || ||| ||||||| || | ||||||||||| ||||||||
seq2  AGTTATTAT-ATAATGCCATAGATTGAAT-AAACCATGTGGTTCCATATA  90

seq1  AATAAGTTATGACAATTGGTTAT-AAAAGCAGATAGCAAAAGCTTTTTCT  148
      ||| ||| ||||| ||||||||| ||||||||||||||||||||||||||
seq2  AAT-AGTAATGAC-ATTGGTTATAAAAAGCAGATAGCAAAAGCTTTTTCT  138

seq1  TACAAAAAAGAGAATTGAAAGTTTT-CCATCTACATATTGTCTTATTTTG  197
         |||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAAAAAAAGAGAATTGAAAGTTTTCCCATCTACATATTGTCTTATTTTG  188

seq1  GAAGGAAAATTTAAAATGTGGCTTGGAGTATGAGGTGAGAATGAATCCGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAATTTAAAATGTGGCTTGGAGTATGAGGTGAGAATGAATCCGG  238

seq1  GAGTTGGAATGATAGAAAGCACTGAGCATCATCCTCAGGATTGCTGCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGAATGATAGAAAGCACTGAGCATCATCCTCAGGATTGCTGCATA  288

seq1  ATCTCTGGATTTCTATTTGAGACGATAAACTTTATTTCCTTAAATATTAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGATTTCTATTTGAGACGATAAACTTTATTTCCTTAAATATTAC  338

seq1  AGTAAACTTTTAGTATGATCTCATTGTCGGTGGTATGTTTGGTCCCCAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTTTTAGTATGATCTCATTGTCGGTGGTATGTTTGGTCCCCAAG  388

seq1  CTTTCTACAAAATTCTTGCTGTTGTGTTCTGCTGAAGTACTTTAAGTATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACAAAATTCTTGCTGTTGTGTTCTGCTGAAGTACTTTAAGTATA  438

seq1  AAGTTTCCTTATATCATTGGTAAAAAGGTTTTTTTTAAGTTAAAAAAATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCTTATATCATTGGTAAAAAGGTTTTTTTTAAGTTAAAAAAATA  488

seq1  GGAAAGAACTAAAATGGCAGTTTAAATACTTACTCTGCCCATCCTGATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACTAAAATGGCAGTTTAAATACTTACTCTGCCCATCCTGATAC  538

seq1  CCCTTATAAATTCTAATCTAGAAAACCAATATTTGAAATTTTTCAATTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATAAATTCTAATCTAGAAAACCAATATTTGAAATTTTTCAATTTT  588

seq1  TATTAATTAATGTATGGCATTTAGTTTGGACCAACCTCCCAAATTTAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTAATGTATGGCATTTAGTTTGGACCAACCTCCCAAATTTAATA  638

seq1  AAAGATAAATATTTCTTTGAATTTGTTAAAGAAAATATCTATATATTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAATATTTCTTTGAATTTGTTAAAGAAAATATCTATATATTCCT  688

seq1  AAGTATCTGAGTATAATCTCCTCAGTATTATAATGCTATTTGTAATTATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGAGTATAATCTCCTCAGTATTATAATGCTATTTGTAATTATG  738

seq1  TACTTAAACCTGACCACGTGGCATTGGATTGGTGTACCCATCCCTGTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAAACCTGACCACGTGGCATTGGATTGGTGTACCCATCCCTGTTGA  788

seq1  AGATTATTTCTCCCATTGAATACATTCCTCACTTGTCTTTAGGAGTTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTCTCCCATTGAATACATTCCTCACTTGTCTTTAGGAGTTTCT  838

seq1  TTTTGTATGTTTGGTTTGTTTTATTTCTGTAGAGTTAAGGCCTCCTGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGTTTGGTTTGTTTTATTTCTGTAGAGTTAAGGCCTCCTGAGA  888

seq1  TATTTTTTGGCCACAATACCATGTATATTATTGCTGTGCTTATTCAGTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGGCCACAATACCATGTATATTATTGCTGTGCTTATTCAGTTC  938

seq1  ATGTTTAGGCAGTCATGTTTGTGATAATTTATGGGTGAACCTTCTGACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAGGCAGTCATGTTTGTGATAATTTATGGGTGAACCTTCTGACAT  988

seq1  TACTTGTAAATGCTATCTCAAGAAAACCTTTTTGATTTCCCCTCTGGCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAAATGCTATCTCAAGAAAACCTTTTTGATTTCCCCTCTGGCTC  1038

seq1  TTCTAAGATTATTCCTCAGCCTTAGCAGCAAGAGTTGGATTGTAGATATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGATTATTCCTCAGCCTTAGCAGCAAGAGTTGGATTGTAGATATG  1088

seq1  TTAGTTGTAGATATGTTAGTTGTAGATATGTTAGTTGTAGATATGTTTGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTAGATATGTTAGTTGTAGATATGTTAGTTGTAGATATGTTTGT  1138

seq1  TGGCACTGGAATTC  1161
      ||||||||||||||
seq2  TGGCACTGGAATTC  1152


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