BAC Information

Click to search

BAC

Clone NameB6Ng01-258J11
Chromosome18 (Build37)
Map Location 68,962,139 - 69,090,798
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4, Ccdc68
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258J11.bB6Ng01-258J11.g
ACCGA063992GA063993
length1,1511,106
definitionB6Ng01-258J11.b B6Ng01-258J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,962,139 - 68,963,294)(69,089,691 - 69,090,798)
sequence
gaattcctagtgctttacagcgacgagtatgctttctccattgctctaaa
gaaaacctcaaggctttctcatgtgtgggatcagggacattagggttatt
atctgcaagatgctaaagaaattttgtctttcccagcactaaataactta
tcgggatattttttttcagcaggacacaatatcctggttcatttctggcc
tcggtggtagagaacacggtgttgtggtgttcctggcacagcagggctgc
agaggctggctgagaaatcaactctcgatcttgccttcctcatttattac
tggaaactaaggtcaatttaaggagactcaccagaagattataagacaga
gtatggagcagtgagctggcctgagtataaagttgttaatgcaaaattgt
ctcagacaatgtgcatgataaagaccagtaccagcccaccacatgcatac
acaagcacacatctgcattcacttcgacacacacccacacattcacatac
acacagaaatatgaatgagtacataaacaaagttcacaatttccaaatag
ctggtcgctcctaggtatccccttatttattttgtttccttgacatctct
tgagtatctcgggtcatggactccagtctacactataattttaccaagtc
acatagtttcctttgtgatcaacagaagaatgtagccccataaaaaatgg
gctcctgagatactttatgtcttaactacttgaaattccttcttcaatcc
atgtcttggaaagaaaatatcaatccaaaccttaaaaatattagttaatt
attcaaaatatgatgtgtacagttaaaataataaaattttgaataaaata
atcagtggcagaatgttctgattgatttttaaaaagcaaattattgcttt
atttcttttaggggatgatagggaatgtcttactttgggttactgttgct
gtgatgaatccccaagaccaaaagcaacatggagaggaagggtcttattt
cattcacagttccacatacagttcatcatcaaaagcagtgagggcaggaa
ctcatggaggagcagagatctggagcaggagctgatgagtagcatggaga
gaattgctctttcatgccttgcttagcttgcgttcttatagactggaaca
c

gaattcaaaagttgtgcaatgcccagaatgatcaactctcagagtttgaa
acttgaagaacttcagaatcaggcaaatcaataactgtatgagaattaac
atgcaagaaacttggtagtcagaaagtctcagacttgggccacatcatgt
tctgactttgtgagtggagggtgctgctggtaagaacacttgaatcgaca
tccaaataggacaacctgcagtggtagaagatttcccccacaaacaaggg
actcatgaaaaattgctgactagacaaattaatggtgggctggaactaca
tctaaaataagacttccacgctatttggaattaacaacaaagaacaaata
gggtgagtaaggatgactcttgatgtgctacagtcaattttaaagtcttt
ccctctattctctaaacaaatacccaccactctcgattttcttaaaaaaa
gaaaactaaacaaataatatgctaaataggaacactaccaaccacacata
cttactgctcaatcatggtccaggcaagtatcaaaggattctttttgact
gtcccctagagttgaattccattatttttcttaggtaataataaggggct
gaataatgagcaactaccagagacttaccataccttctacttactaacag
caatgggaagcagcagagcaatgaggcacaggagacctggacatcattga
catggggaaggaaaaggccctgggaagaacctctaatatgacacagacac
tgtggcctgtgctggaaagcgagcgtctagtaggaagtttgatgcttgga
caaatgatcccaataacacgtgaaagctctcctagaactccttatgaata
taaacagaactcagagagacccagaacccagaggaggaaaagggggtagc
tttggggagcttctgcaagaaagtgggtctagaagaacagtagaagccag
aggtagtggcgcacacttttaaatccaagcactcagaggtagaggctttg
gatcactaagttcgagccagcctgatctaatgagcagttcagaccatcca
atgtcgtacaaaaaaatcctgcttgaaaaagaaggaggaggaggaaggaa
ggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68962139_68963294
seq2: B6Ng01-258J11.b_43_1193

seq1  GAATTCCTAGTGCTTTACAGCGACGAGTATGCTTTCTCCATTGCTCTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTGCTTTACAGCGACGAGTATGCTTTCTCCATTGCTCTAAA  50

seq1  GAAAACCTCAAGGCTTTCTCATGTGTGGGATCAGGGACATTAGGGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTCAAGGCTTTCTCATGTGTGGGATCAGGGACATTAGGGTTATT  100

seq1  ATCTGCAAGATGCTAAAGAAATTTTGTCTTTCCCAGCACTAAATAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAGATGCTAAAGAAATTTTGTCTTTCCCAGCACTAAATAACTTA  150

seq1  TCGGGATATTTTTTTTCAGCAGGACACAATATCCTGGTTCATTTCTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATATTTTTTTTCAGCAGGACACAATATCCTGGTTCATTTCTGGCC  200

seq1  TCGGTGGTAGAGAACACGGTGTTGTGGTGTTCCTGGCACAGCAGGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGGTAGAGAACACGGTGTTGTGGTGTTCCTGGCACAGCAGGGCTGC  250

seq1  AGAGGCTGGCTGAGAAATCAACTCTCGATCTTGCCTTCCTCATTTATTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGGCTGAGAAATCAACTCTCGATCTTGCCTTCCTCATTTATTAC  300

seq1  TGGAAACTAAGGTCAATTTAAGGAGACTCACCAGAAGATTATAAGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTAAGGTCAATTTAAGGAGACTCACCAGAAGATTATAAGACAGA  350

seq1  GTATGGAGCAGTGAGCTGGCCTGAGTATAAAGTTGTTAATGCAAAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAGCAGTGAGCTGGCCTGAGTATAAAGTTGTTAATGCAAAATTGT  400

seq1  CTCAGACAATGTGCATGATAAAGACCAGTACCAGCCCACCACATGCATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAATGTGCATGATAAAGACCAGTACCAGCCCACCACATGCATAC  450

seq1  ACAAGCACACATCTGCATTCACTTCGACACACACCCACACATTCACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACACATCTGCATTCACTTCGACACACACCCACACATTCACATAC  500

seq1  ACACAGAAATATGAATGAGTACATAAACAAAGTTCACAATTTCCAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAATATGAATGAGTACATAAACAAAGTTCACAATTTCCAAATAG  550

seq1  CTGGTCGCTCCTAGGTATCCCCTTATTTATTTTGTTTCCTTGACATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCGCTCCTAGGTATCCCCTTATTTATTTTGTTTCCTTGACATCTCT  600

seq1  TGAGTATCTCGGGTCATGGACTCCAGTCTACACTATAATTTTACCAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCTCGGGTCATGGACTCCAGTCTACACTATAATTTTACCAAGTC  650

seq1  ACATAGTTTCCTTTGTGATCAACAGAAGAATGTAGCCCCATAAAAAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTCCTTTGTGATCAACAGAAGAATGTAGCCCCATAAAAAATGG  700

seq1  GCTCCTGAGATACTTTATGTCTTAACTACTTGAAATTCCTTCTTCAATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGAGATACTTTATGTCTTAACTACTTGAAATTCCTTCTTCAATCC  750

seq1  ATGTCTTGGAAAGAAAATATCAATCCAAACCTTAAAAATATTAGTTAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGGAAAGAAAATATCAATCCAAACCTTAAAAATATTAGTTAATT  800

seq1  ATTCAAAATATGATGTGTACAGTTAAAATAATAAAATTTTGAATAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAATATGATGTGTACAGTTAAAATAATAAAATTTTGAATAAAATA  850

seq1  ATCAGTGGCAGAATGTTCTGATTGATTTTTAAAAAGCAAATTATTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGCAGAATGTTCTGATTGATTTTTAAAAAGCAAATTATTGCTTT  900

seq1  ATTTCTTTTAGGGGAATGATAGGGAATGTCTTACTTTGGGTTACTGTTGC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTAGGGG-ATGATAGGGAATGTCTTACTTTGGGTTACTGTTGC  949

seq1  TGTGATGAATCCCCAAGACCAAAAGCAACATGGAGAGGAAGGGGTCTATT  1000
      |||||||||||||||||||||||||||||||||||||||||||   ||||
seq2  TGTGATGAATCCCCAAGACCAAAAGCAACATGGAGAGGAAGGGTCTTATT  999

seq1  TCATTCACAGTTCCACATAACAGTTCATCATCAAAAGCAGTGAGGGCAGG  1050
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATTCACAGTTCCACAT-ACAGTTCATCATCAAAAGCAGTGAGGGCAGG  1048

seq1  AACTCATGGA-GAGCAGAGATCCTGGAGGCAGGAGCTGATAGAGTAGCCA  1099
      |||||||||| |||||||||| ||||| |||||||||||| |||||| ||
seq2  AACTCATGGAGGAGCAGAGAT-CTGGA-GCAGGAGCTGAT-GAGTAG-CA  1094

seq1  TGGAGAGA--TGCTC-TTCATGGCTTGCTTAGCCTGCTTTCTTATAGAAC  1146
      ||||||||  ||||| |||||| |||||||||| ||| ||||||||||  
seq2  TGGAGAGAATTGCTCTTTCATGCCTTGCTTAGCTTGCGTTCTTATAGA--  1142

seq1  CCGGGAACAC  1156
       | |||||||
seq2  -CTGGAACAC  1151


seq1: chr18_69089691_69090798
seq2: B6Ng01-258J11.g_67_1172 (reverse)

seq1  TCCTCC-----TCCTCCTCCTCCTCCTTTTTCAAAGCAGGATTTTTTTGT  45
      ||||||     ||||||||||||| ||||||| |||||||||||||||||
seq2  TCCTCCTTCCTTCCTCCTCCTCCTTCTTTTTC-AAGCAGGATTTTTTTGT  49

seq1  ACGACATTGGATGGTCTGGAACTTGCTCATTAGATCAGGCTGGCCTCGAA  95
      ||||||||||||||||| |||| |||||||||||||||||||| ||||||
seq2  ACGACATTGGATGGTCT-GAAC-TGCTCATTAGATCAGGCTGG-CTCGAA  96

seq1  CTTAGTGATCCCAAAGCCTCTACCTCCTGAGTGCTTGGATTAAAAAGTGT  145
      ||||||||| ||||||||||||||| ||||||||||||||| ||||||||
seq2  CTTAGTGAT-CCAAAGCCTCTACCT-CTGAGTGCTTGGATTTAAAAGTGT  144

seq1  GCGCCACTACCTCTGGCTTCTACCTGTTCTTCTAGACCCACTTTCTTGCA  195
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCGCCACTACCTCTGGCTTCTA-CTGTTCTTCTAGACCCACTTTCTTGCA  193

seq1  GAAGCTCCCCAAAGCTACCCCCCTTTCCTCCTCTGGGTTCTGGGTCTCTC  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGCTCCCCAAAGCTACCCCCTTTTCCTCCTCTGGGTTCTGGGTCTCTC  243

seq1  TGAGTTCTGTTTATATTCATAAGGAGTTCTAGGAGAGCTTTCACGTGTTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTGTTTATATTCATAAGGAGTTCTAGGAGAGCTTTCACGTGTTA  293

seq1  TTGGGATCATTTGTCCAAGCATCAAACTTCCTACTAGACGCTCGCTTTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCATTTGTCCAAGCATCAAACTTCCTACTAGACGCTCGCTTTCC  343

seq1  AGCACAGGCCACAGTGTCTGTGTCATATTAGAGGTTCTTCCCAGGGCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGCCACAGTGTCTGTGTCATATTAGAGGTTCTTCCCAGGGCCTT  393

seq1  TTCCTTCCCCATGTCAATGATGTCCAGGTCTCCTGTGCCTCATTGCTCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCCATGTCAATGATGTCCAGGTCTCCTGTGCCTCATTGCTCTG  443

seq1  CTGCTTCCCATTGCTGTTAGTAAGTAGAAGGTATGGTAAGTCTCTGGTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCCATTGCTGTTAGTAAGTAGAAGGTATGGTAAGTCTCTGGTAG  493

seq1  TTGCTCATTATTCAGCCCCTTATTATTACCTAAGAAAAATAATGGAATTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTATTCAGCCCCTTATTATTACCTAAGAAAAATAATGGAATTC  543

seq1  AACTCTAGGGGACAGTCAAAAAGAATCCTTTGATACTTGCCTGGACCATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGGGGACAGTCAAAAAGAATCCTTTGATACTTGCCTGGACCATG  593

seq1  ATTGAGCAGTAAGTATGTGTGGTTGGTAGTGTTCCTATTTAGCATATTAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGCAGTAAGTATGTGTGGTTGGTAGTGTTCCTATTTAGCATATTAT  643

seq1  TTGTTTAGTTTTCTTTTTTTAAGAAAATCGAGAGTGGTGGGTATTTGTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTTTTCTTTTTTTAAGAAAATCGAGAGTGGTGGGTATTTGTTT  693

seq1  AGAGAATAGAGGGAAAGACTTTAAAATTGACTGTAGCACATCAAGAGTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAGAGGGAAAGACTTTAAAATTGACTGTAGCACATCAAGAGTCA  743

seq1  TCCTTACTCACCCTATTTGTTCTTTGTTGTTAATTCCAAATAGCGTGGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACTCACCCTATTTGTTCTTTGTTGTTAATTCCAAATAGCGTGGAA  793

seq1  GTCTTATTTTAGATGTAGTTCCAGCCCACCATTAATTTGTCTAGTCAGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTAGATGTAGTTCCAGCCCACCATTAATTTGTCTAGTCAGCA  843

seq1  ATTTTTCATGAGTCCCTTGTTTGTGGGGGAAATCTTCTACCACTGCAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATGAGTCCCTTGTTTGTGGGGGAAATCTTCTACCACTGCAGGT  893

seq1  TGTCCTATTTGGATGTCGATTCAAGTGTTCTTACCAGCAGCACCCTCCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATTTGGATGTCGATTCAAGTGTTCTTACCAGCAGCACCCTCCAC  943

seq1  TCACAAAGTCAGAACATGATGTGGCCCAAGTCTGAGACTTTCTGACTACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGTCAGAACATGATGTGGCCCAAGTCTGAGACTTTCTGACTACC  993

seq1  AAGTTTCTTGCATGTTAATTCTCATACAGTTATTGATTTGCCTGATTCTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCTTGCATGTTAATTCTCATACAGTTATTGATTTGCCTGATTCTG  1043

seq1  AAGTTCTTCAAGTTTCAAACTCTGAGAGTTGATCATTCTGGGCATTGCAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTTCAAGTTTCAAACTCTGAGAGTTGATCATTCTGGGCATTGCAC  1093

seq1  AACTTTTGAATTC  1108
      |||||||||||||
seq2  AACTTTTGAATTC  1106


| Home | SequenceCutter | Blast | Download |