BAC Information

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BAC

Clone NameB6Ng01-259A05
Chromosome18 (Build37)
Map Location 36,864,646 - 37,059,031
singlet/doubletdoublet
Overlap geneCd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2
Upstream gene1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik
Downstream geneEG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259A05.bB6Ng01-259A05.g
ACCGA064306GA064307
length1,0421,128
definitionB6Ng01-259A05.b B6Ng01-259A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,058,016 - 37,059,031)(36,864,646 - 36,865,785)
sequence
gaattccataaaatcattaattcatataaacagcattatctcaagaactt
tcatcttcatgttgatctgcagaaaactttcctagcagagtggactatca
cccaggaagtaatcacactaggatatagtgagggtctcacagtgtccact
taaaggaatccaaataaatgaggagtatggcaatgacagacatgagaaaa
cacatcagtagcaaaaatcaatcctggggcaaagtctctggggccatgcc
tttccagagtgcagccatcatagctgagcaagatggcaggctatctccag
agagttcacttgcccactgtagctcttcctacatggcacctgccagatta
ataaacagaagaaggtgggaagataggtaagctggaatgacaggatacaa
gtggtttcataggaaaatgggaaaacagggggctctttatggaagatgga
gggaaataaatacaagagaaggagtggtgggtaatataacaatgtggata
tctgaaaaagtcataagaaatcatacaattaactatgtatctttagaaaa
cttatgaaaaaacaactcagtatatgtgtgtatatataggttttttttta
atttaattcaatttgtaattcattttttacactccatattccattcccca
cctttccccacccaccctctgactgctccacatcccaactccctccctac
cccatctccatgtggataccccacccctcaccccacctgacctctaaact
ccctggggcattcagtctcttgagggttaggtgcatcatctctgaatgaa
cacagacctggaagtcctctactgtatgtgtgttggggtgctcatattag
ctggtgtatgctgtctgtttggtggtctgccccagatgggcctcagtcag
cccccctcaatctgcaggagaaatcagcattccagtacagcaaggagttg
gcacagatggacaaacaaatacagacccagagagagtgtatatctgaatg
taatttgtcaagtgagcatcagtcctatataattacagaaaa
gaattctgtgaaactagatggtccttgatgtatgactaaaaattgaggca
taggggcacagcacagcacagcacagtcctaatagcccaggtacatgctg
tgtgttctcatcttggaaacaatgcaataactgcacaatggtagtcccag
attaatgattgacttgcaaacaaagtttgaagacattatttaaaaatgaa
atagagccaacattggaaccccaagaaagaaaaaaaaaaactattgaagt
tataaaataagttttacacaacatttgagagtggttcctggataaacaag
tataaaatatataaaatcttatattagtaaaactaagtcaaaacactgga
ctctcttaggagagtcattgtgtacaatgtgcagaagcagaaagctagtg
gaactactgagttaagggttaacttcattctttctggccactgcctggca
gctttgcccaggtcatttatcattagagcttcacaagaaaatgcaagtag
ccggcctcagagctctgagctctgaagtacaataagtcaaaagttaaagt
ttaaataatggtgtttacaattattattattttggccaaaggcttgaaat
aataggggaagcttgaaactttgggaaacaattgtaattcttaattcttt
gtgggatgttgtactggctggttttgtgtgtcaacttgacacaggctgga
gttatcacagagaaaggagcttcagttggggaagtgcctccatgagatcc
agctgtggggcattttctcaattagtgatcaaaggaggaggtccccttgt
gggtgggaccatatctgggttggtagtcttgggttctataagaaagtagg
ctgagcaagccagtggaagcatgtcagtaagtaacatccctccatggctt
ctgcatcagctctgctttctgacctatttgagtgccagtcctgatttccc
ttggtgataaacagcagtgtgaaagtatagctgataaccctttcctcccg
acttgcttcttggtcatgatgttgtgcagaatagaaccttacgagaccga
tgtgatttattcttttggatttgacatgaattacacgatgcctttttttc
tacctgcttgaagtatcataaagactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37058016_37059031
seq2: B6Ng01-259A05.b_69_1084 (reverse)

seq1  TTTTCTGTAA-TATATAAGACTGATGCTCACTTTGACAAAATTACATTCA  49
      |||||||||| |||||| ||||||||||||| ||||| ||||||||||||
seq2  TTTTCTGTAATTATATAGGACTGATGCTCAC-TTGAC-AAATTACATTCA  48

seq1  GATATACACTCTCTCTGTGTCTGTATTTGTTTGT-CATCTGTGCCAACTC  98
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  GATATACACTCTCTCTGGGTCTGTATTTGTTTGTCCATCTGTGCCAACTC  98

seq1  CTTGCTGTACTGGAATGCTGATTTCTCCTGCAGATTGAGGGGGGCTGACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTACTGGAATGCTGATTTCTCCTGCAGATTGAGGGGGGCTGACT  148

seq1  GAGGCCCATCTGGGGCAGACCACCAAACAGACAGCATACACCAGCTAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCATCTGGGGCAGACCACCAAACAGACAGCATACACCAGCTAATA  198

seq1  TGAGCACCCCAACACACATACAGTAGAGGACTTCCAGGTCTGTGTTCATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCCCAACACACATACAGTAGAGGACTTCCAGGTCTGTGTTCATT  248

seq1  CAGAGATGATGCACCTAACCCTCAAGAGACTGAATGCCCCAGGGAGTTTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGATGCACCTAACCCTCAAGAGACTGAATGCCCCAGGGAGTTTA  298

seq1  GAGGTCAGGTGGGGTGAGGGGTGGGGTATCCACATGGAGATGGGGTAGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGGTGGGGTGAGGGGTGGGGTATCCACATGGAGATGGGGTAGGG  348

seq1  AGGGAGTTGGGATGTGGAGCAGTCAGAGGGTGGGTGGGGAAAGGTGGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTTGGGATGTGGAGCAGTCAGAGGGTGGGTGGGGAAAGGTGGGGA  398

seq1  ATGGAATATGGAGTGTAAAAAATGAATTACAAATTGAATTAAATTAAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATGGAGTGTAAAAAATGAATTACAAATTGAATTAAATTAAAAA  448

seq1  AAAACCTATATATACACACATATACTGAGTTGTTTTTTCATAAGTTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATATATACACACATATACTGAGTTGTTTTTTCATAAGTTTTCT  498

seq1  AAAGATACATAGTTAATTGTATGATTTCTTATGACTTTTTCAGATATCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACATAGTTAATTGTATGATTTCTTATGACTTTTTCAGATATCCA  548

seq1  CATTGTTATATTACCCACCACTCCTTCTCTTGTATTTATTTCCCTCCATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTATATTACCCACCACTCCTTCTCTTGTATTTATTTCCCTCCATC  598

seq1  TTCCATAAAGAGCCCCCTGTTTTCCCATTTTCCTATGAAACCACTTGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAAGAGCCCCCTGTTTTCCCATTTTCCTATGAAACCACTTGTAT  648

seq1  CCTGTCATTCCAGCTTACCTATCTTCCCACCTTCTTCTGTTTATTAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATTCCAGCTTACCTATCTTCCCACCTTCTTCTGTTTATTAATCT  698

seq1  GGCAGGTGCCATGTAGGAAGAGCTACAGTGGGCAAGTGAACTCTCTGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCCATGTAGGAAGAGCTACAGTGGGCAAGTGAACTCTCTGGAG  748

seq1  ATAGCCTGCCATCTTGCTCAGCTATGATGGCTGCACTCTGGAAAGGCATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTGCCATCTTGCTCAGCTATGATGGCTGCACTCTGGAAAGGCATG  798

seq1  GCCCCAGAGACTTTGCCCCAGGATTGATTTTTGCTACTGATGTGTTTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGAGACTTTGCCCCAGGATTGATTTTTGCTACTGATGTGTTTTCT  848

seq1  CATGTCTGTCATTGCCATACTCCTCATTTATTTGGATTCCTTTAAGTGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTCATTGCCATACTCCTCATTTATTTGGATTCCTTTAAGTGGA  898

seq1  CACTGTGAGACCCTCACTATATCCTAGTGTGATTACTTCCTGGGTGATAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAGACCCTCACTATATCCTAGTGTGATTACTTCCTGGGTGATAG  948

seq1  TCCACTCTGCTAGGAAAGTTTTCTGCAGATCAACATGAAGATGAAAGTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGCTAGGAAAGTTTTCTGCAGATCAACATGAAGATGAAAGTTC  998

seq1  TTGAGATAATGCTGTTTA  1016
      ||||||||||||||||||
seq2  TTGAGATAATGCTGTTTA  1016

seq1: chr18_36864646_36865785
seq2: B6Ng01-259A05.g_68_1195

seq1  GAATTCTGTGAAACTAGATGGTCCTTGATGTATGACTAAAAATTGAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAAACTAGATGGTCCTTGATGTATGACTAAAAATTGAGGCA  50

seq1  TAGGGGCACAGCACAGCACAGCACAGTCCTAATAGCCCAGGTACATGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCACAGCACAGCACAGCACAGTCCTAATAGCCCAGGTACATGCTG  100

seq1  TGTGTTCTCATCTTGGAAACAATGCAATAACTGCACAATGGTAGTCCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCATCTTGGAAACAATGCAATAACTGCACAATGGTAGTCCCAG  150

seq1  ATTAATGATTGACTTGCAAACAAAGTTTGAAGACATTATTTAAAAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGATTGACTTGCAAACAAAGTTTGAAGACATTATTTAAAAATGAA  200

seq1  ATAGAGCCAACATTGGAACCCCAAGAAAGAAAAAAAAAAACTATTGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCAACATTGGAACCCCAAGAAAGAAAAAAAAAAACTATTGAAGT  250

seq1  TATAAAATAAGTTTTACACAACATTTGAGAGTGGTTCCTGGATAAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAGTTTTACACAACATTTGAGAGTGGTTCCTGGATAAACAAG  300

seq1  TATAAAATATATAAAATCTTATATTAGTAAAACTAAGTCAAAACACTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATATAAAATCTTATATTAGTAAAACTAAGTCAAAACACTGGA  350

seq1  CTCTCTTAGGAGAGTCATTGTGTACAATGTGCAGAAGCAGAAAGCTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTAGGAGAGTCATTGTGTACAATGTGCAGAAGCAGAAAGCTAGTG  400

seq1  GAACTACTGAGTTAAGGGTTAACTTCATTCTTTCTGGCCACTGCCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTACTGAGTTAAGGGTTAACTTCATTCTTTCTGGCCACTGCCTGGCA  450

seq1  GCTTTGCCCAGGTCATTTATCATTAGAGCTTCACAAGAAAATGCAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCCAGGTCATTTATCATTAGAGCTTCACAAGAAAATGCAAGTAG  500

seq1  CCGGCCTCAGAGCTCTGAGCTCTGAAGTACAATAAGTCAAAAGTTAAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCTCAGAGCTCTGAGCTCTGAAGTACAATAAGTCAAAAGTTAAAGT  550

seq1  TTAAATAATGGTGTTTACAATTATTATTATTTTGGCCAAAGGCTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATGGTGTTTACAATTATTATTATTTTGGCCAAAGGCTTGAAAT  600

seq1  AATAGGGGAAGCTTGAAACTTTGGGAAACAATTGTAATTCTTAATTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGGAAGCTTGAAACTTTGGGAAACAATTGTAATTCTTAATTCTTT  650

seq1  GTGGGATGTTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATGTTGTACTGGCTGGTTTTGTGTGTCAACTTGACACAGGCTGGA  700

seq1  GTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACAGAGAAAGGAGCTTCAGTTGGGGAAGTGCCTCCATGAGATCC  750

seq1  AGCTGTGGGGCATTTTCTCAATTAGTGATC-AAGGAGGAGGTCCCCTTGT  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTGTGGGGCATTTTCTCAATTAGTGATCAAAGGAGGAGGTCCCCTTGT  800

seq1  GGGTGGGACCATATCTGGGTTGGTAGTCTTGGGTTCTATAAGAAAGTAAG  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGGTGGGACCATATCTGGGTTGGTAGTCTTGGGTTCTATAAGAAAGTAGG  850

seq1  CTGAGCAAGCCAGTGGAAGCATGTCAGTAAGTAACATCCCTCCATGGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCCAGTGGAAGCATGTCAGTAAGTAACATCCCTCCATGGCTT  900

seq1  CTGCATCAGCTCCTGCTTTCTGACCTATTTGAGTGCCAGTCCTGATTTCC  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGCT-CTGCTTTCTGACCTATTTGAGTGCCAGTCCTGATTTCC  949

seq1  CTTGGTGATAAACAGCAGTGTGAAAGTATAAGCTGAATAAACCCTTTCCT  999
      ||||||||||||||||||||||||||||| ||||||   |||||||||||
seq2  CTTGGTGATAAACAGCAGTGTGAAAGTAT-AGCTGA--TAACCCTTTCCT  996

seq1  CCCCGACTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGA  1049
       ||||||||||||||||||||||||| ||||||| ||||||||  ||| |
seq2  -CCCGACTTGCTTCTTGGTCATGATG-TTGTGCA-GAATAGAA--CCTTA  1041

seq1  CGAAGACAGATGTGA-TTATTCTTTTGGATTTGACAATGATTACACGATG  1098
      || |||| ||||||| ||||||||||||||||||||   |||||||||||
seq2  CG-AGACCGATGTGATTTATTCTTTTGGATTTGACATGAATTACACGATG  1090

seq1  TCTTTTTTTCTACCTGCTTTTAGAGTATCAATAAAAGACTGG  1140
       ||||||||||||||||  ||  |||||||   |||||||||
seq2  CCTTTTTTTCTACCTGC--TTGAAGTATCA--TAAAGACTGG  1128