BAC Information

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BAC

Clone NameB6Ng01-259C09
Chromosome18 (Build37)
Map Location 51,063,475 - 51,262,260
singlet/doubletdoublet
Overlap geneLOC100042385
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream genePrr16, EG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259C09.bB6Ng01-259C09.g
ACCGA064407GA064408
length1,1421,138
definitionB6Ng01-259C09.b B6Ng01-259C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,261,108 - 51,262,260)(51,063,475 - 51,064,624)
sequence
gaattctttttaaaaaaatgatattctactacatgcatatggtacattct
gctcttccactcttctgctgttggactacagttaaaaatatccctttgga
aatgagggtaagacatttttctaaaatcctgttttcagttactcagaatc
acaactgctaaattacataatttaaactctattttattatttacatattt
cttatgtaaaatgacttgtttcattgcagcattaaaaatattagccctgc
atgtgtaagaaagtgtgctgcattacagaatttttaaaaataggcatggg
ttccacatatgtacacagtatttgtacatctgagtctaactcatttcaat
taatatggtgccttcagtttcacccattttcctgcacatgacaaaaccac
cgtcttcttcatggccaaataaaactatgttgtgcatgtatggaataatt
tccttctttaatttttgtttgattttttccttataatatatttgatcatg
tccttccttctccttcaactcccacctccttcctgactcgacttcatgct
ctttttatctcaaacaaaacaatacaaaatgataaaactgagagaacatt
agcaagaaaaacaaaatcaaaataaactgaaaaggggagaaaaagaaaat
cagtaaaacaaaaaattctaaagcaaacaaaaagcccactgaaagtcaaa
caaaagaaaccaggtagtccatgttgtattgccaaagtcctccaagacat
ggagtcagctgtagagggccgggcccagtgacactccactggagaaaagt
gatttctccctttcccagcagatttaaactggttaaggtcttggtgtcca
cttctccttctcagcgctggggattttgattgtgtttaaatctgtggggg
ccttgtgtgtgttgccatagtctctgtcagttcatttgtgcataagccct
gtcctttggaaacactattccttggcccttaaaatccacaaccccgggat
cttaaatcttcctggctttactttgttgatcctgagccttgagaaagtgg
gtttgacaggactgatgttcccaagtctttacatgtgttacattgtctgt
cattgggatcaatctatgctttctcttatacagctataatag

gaattcctattccaagtctcctactggatattattacggtaggatgttat
tttgaatttaatagtaggtttttttctttctttttttttttctttttgag
aatgtgtgttcttcttaaatttactcaatttacaaagattttctaaatta
aatcagtattctatttctagacttaacctgacttgataatcaacaattat
ccttgtgtacattcctaaataaaattgctaacaagttaactaggattatt
gtgtgtttgtttatacacattacaacctagaattttgtgttttgctagtt
tccttcactggaatgtatcaaggtcatgttagtttcataaaatgagttaa
agagtggcagctcttacagtattttctggaagagtttgtataaggtttca
atgagacattaaccaagggtttaatagacattcaatggaaactcatttga
acctatgattgcctttgttgaaaatgttaaaatgatggattgtatcttat
tgattctagttgaatctaaaggtttatgctggtcctgacaagttgatttg
gatatatatttattttttcaaaaatatgtgtacttttccaattatttcat
ttcatttttgaagattgttcctaaaaccatatttcctatttttataatga
agtatatccaacttttcatccatggcactatctttctgatttctttcttt
tgctttttgccttttgcctaagactgttaacatttcttagactatagaca
tgtttaggacacttatagactctccttaggctacagaaattcgtagtgtc
tgctgtaatatgttttcagtcttatacttcctatgctgtggatttgccat
gtgtttaccttactactcattaaatccacatataaggaatttcataaaat
cttagatggaatgcttaatttccaattactcttacttttttgttgtttgt
ttgtttgtttgatgttgttttttgagaatagagtttctctgtgtagccct
tgctgtcttgactcactctgtagaccaggcttggcattgacttcagaatc
aactgcttctgcctccagtgcctgggatttaaggaatgtggccgcacaca
acgctactcttactttataaggtagcactgagtaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51261108_51262260
seq2: B6Ng01-259C09.b_48_1189 (reverse)

seq1  CTATTATAGGCTGTTATAGGAAGAAAGCAATAAGATTGATCCCAATGACA  50
      |||||||| |||| |||| | ||||||||   ||||||||||||||||| 
seq2  CTATTATA-GCTG-TATAAG-AGAAAGCA--TAGATTGATCCCAATGAC-  44

seq1  AGACAATGT-ACACATGGTAAAGACTTGGGAACACTCAGTCCTGGTCAAA  99
      ||||||||| |||||| ||||||||||||||||| |||||||| ||||||
seq2  AGACAATGTAACACAT-GTAAAGACTTGGGAACA-TCAGTCCT-GTCAAA  91

seq1  CCCACTTTCTCAAGGCTCAGGATCAACAAAGTAAAGCCAGGAAGATTTTA  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCCACTTTCTCAAGGCTCAGGATCAACAAAGTAAAGCCAGGAAGA-TTTA  140

seq1  AGATCCGGGGGTTGTGGATTTTTAAGGGCCAAGGAAATAGTGTTTCCAAA  199
      |||||| ||||||||||| ||||||||||||||| |||||||||||||||
seq2  AGATCCCGGGGTTGTGGA-TTTTAAGGGCCAAGG-AATAGTGTTTCCAAA  188

seq1  GGACAGGGCTTATGCACAAATGAACTGACAGAGACTATGGCAACACACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGGCTTATGCACAAATGAACTGACAGAGACTATGGCAACACACAC  238

seq1  AAGGCCCCCACAGATTTAAACACAATCAAAATCCCCAGCGCTGAGAAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCCCACAGATTTAAACACAATCAAAATCCCCAGCGCTGAGAAGGA  288

seq1  GAAGTGGACACCAAGACCTTAACCAGTTTAAATCTGCTGGGAAAGGGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGACACCAAGACCTTAACCAGTTTAAATCTGCTGGGAAAGGGAGA  338

seq1  AATCACTTTTCTCCAGTGGAGTGTCACTGGGCCCGGCCCTCTACAGCTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTTTCTCCAGTGGAGTGTCACTGGGCCCGGCCCTCTACAGCTGA  388

seq1  CTCCATGTCTTGGAGGACTTTGGCAATACAACATGGACTACCTGGTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTCTTGGAGGACTTTGGCAATACAACATGGACTACCTGGTTTCT  438

seq1  TTTGTTTGACTTTCAGTGGGCTTTTTGTTTGCTTTAGAATTTTTTGTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGACTTTCAGTGGGCTTTTTGTTTGCTTTAGAATTTTTTGTTTT  488

seq1  ACTGATTTTCTTTTTCTCCCCTTTTCAGTTTATTTTGATTTTGTTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTTCTTTTTCTCCCCTTTTCAGTTTATTTTGATTTTGTTTTTCT  538

seq1  TGCTAATGTTCTCTCAGTTTTATCATTTTGTATTGTTTTGTTTGAGATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGTTCTCTCAGTTTTATCATTTTGTATTGTTTTGTTTGAGATAA  588

seq1  AAAGAGCATGAAGTCGAGTCAGGAAGGAGGTGGGAGTTGAAGGAGAAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCATGAAGTCGAGTCAGGAAGGAGGTGGGAGTTGAAGGAGAAGGA  638

seq1  AGGACATGATCAAATATATTATAAGGAAAAAATCAAACAAAAATTAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGATCAAATATATTATAAGGAAAAAATCAAACAAAAATTAAAGA  688

seq1  AGGAAATTATTCCATACATGCACAACATAGTTTTATTTGGCCATGAAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTATTCCATACATGCACAACATAGTTTTATTTGGCCATGAAGAA  738

seq1  GACGGTGGTTTTGTCATGTGCAGGAAAATGGGTGAAACTGAAGGCACCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTGGTTTTGTCATGTGCAGGAAAATGGGTGAAACTGAAGGCACCAT  788

seq1  ATTAATTGAAATGAGTTAGACTCAGATGTACAAATACTGTGTACATATGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGAAATGAGTTAGACTCAGATGTACAAATACTGTGTACATATGT  838

seq1  GGAACCCATGCCTATTTTTAAAAATTCTGTAATGCAGCACACTTTCTTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCATGCCTATTTTTAAAAATTCTGTAATGCAGCACACTTTCTTAC  888

seq1  ACATGCAGGGCTAATATTTTTAATGCTGCAATGAAACAAGTCATTTTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGGGCTAATATTTTTAATGCTGCAATGAAACAAGTCATTTTACA  938

seq1  TAAGAAATATGTAAATAATAAAATAGAGTTTAAATTATGTAATTTAGCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATATGTAAATAATAAAATAGAGTTTAAATTATGTAATTTAGCAG  988

seq1  TTGTGATTCTGAGTAACTGAAAACAGGATTTTAGAAAAATGTCTTACCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTCTGAGTAACTGAAAACAGGATTTTAGAAAAATGTCTTACCCT  1038

seq1  CATTTCCAAAGGGATATTTTTAACTGTAGTCCAACAGCAGAAGAGTGGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAAAGGGATATTTTTAACTGTAGTCCAACAGCAGAAGAGTGGAA  1088

seq1  GAGCAGAATGTACCATATGCATGTAGTAGAATATCATTTTTTTAAAAAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAATGTACCATATGCATGTAGTAGAATATCATTTTTTTAAAAAGA  1138

seq1  ATTC  1153
      ||||
seq2  ATTC  1142


seq1: chr18_51063475_51064624
seq2: B6Ng01-259C09.g_68_1205

seq1  GAATTCCTATTCCAAGTCTCCTACTGGATATTATTACGGTAGGATGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCCAAGTCTCCTACTGGATATTATTACGGTAGGATGTTAT  50

seq1  TTTGAATTTAATAGTAGGTTTTTTTCTTTCTTTTTTTTTTTCTTTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTAATAGTAGGTTTTTTTCTTTCTTTTTTTTTTTCTTTTTGAG  100

seq1  AATGTGTGTTCTTCTTAAATTTACTCAATTTACAAAGATTTTCTAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTTCTTCTTAAATTTACTCAATTTACAAAGATTTTCTAAATTA  150

seq1  AATCAGTATTCTATTTCTAGACTTAACCTGACTTGATAATCAACAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTATTCTATTTCTAGACTTAACCTGACTTGATAATCAACAATTAT  200

seq1  CCTTGTGTACATTCCTAAATAAAATTGCTAACAAGTTAACTAGGATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTACATTCCTAAATAAAATTGCTAACAAGTTAACTAGGATTATT  250

seq1  GTGTGTTTGTTTATACACATTACAACCTAGAATTTTGTGTTTTGCTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTGTTTATACACATTACAACCTAGAATTTTGTGTTTTGCTAGTT  300

seq1  TCCTTCACTGGAATGTATCAAGGTCATGTTAGTTTCATAAAATGAGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTGGAATGTATCAAGGTCATGTTAGTTTCATAAAATGAGTTAA  350

seq1  AGAGTGGCAGCTCTTACAGTATTTTCTGGAAGAGTTTGTATAAGGTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGCAGCTCTTACAGTATTTTCTGGAAGAGTTTGTATAAGGTTTCA  400

seq1  ATGAGACATTAACCAAGGGTTTAATAGACATTCAATGGAAACTCATTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACATTAACCAAGGGTTTAATAGACATTCAATGGAAACTCATTTGA  450

seq1  ACCTATGATTGCCTTTGTTGAAAATGTTAAAATGATGGATTGTATCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGATTGCCTTTGTTGAAAATGTTAAAATGATGGATTGTATCTTAT  500

seq1  TGATTCTAGTTGAATCTAAAGGTTTATGCTGGTCCTGACAAGTTGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAGTTGAATCTAAAGGTTTATGCTGGTCCTGACAAGTTGATTTG  550

seq1  GATATATATTTATTTTTTCAAAAATATGTGTACTTTTCCAATTATTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATATTTATTTTTTCAAAAATATGTGTACTTTTCCAATTATTTCAT  600

seq1  TTCATTTTTGAAGATTGTTCCTAAAACCATATTTCCTATTTTTATAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTGAAGATTGTTCCTAAAACCATATTTCCTATTTTTATAATGA  650

seq1  AGTATATCCAACTTTTCATCCATGGCACTATCTTTCTGATTTCTTTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCCAACTTTTCATCCATGGCACTATCTTTCTGATTTCTTTCTTT  700

seq1  TGCTTTTTGCCTTTTGCCTAAGACTGTTAACATTTCTTAGACTATAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGCCTTTTGCCTAAGACTGTTAACATTTCTTAGACTATAGACA  750

seq1  TGTTTAGGACACTTATAGACTCTCCTTAGGCTACAGAAATTCGTAGTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGACACTTATAGACTCTCCTTAGGCTACAGAAATTCGTAGTGTC  800

seq1  TGCTGTAATATGTTTTCAGTCTTATACTTCCTATGCTGTGGATTTGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAATATGTTTTCAGTCTTATACTTCCTATGCTGTGGATTTGCCAT  850

seq1  GTGTTTACCTTACTACTCATTAAATCCACATATAAGGAATTTCATAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACCTTACTACTCATTAAATCCACATATAAGGAATTTCATAAAAT  900

seq1  CTTAGATGGAATGCTTAATTTCCAATTACTCTTACTTTTTTGTTTGTTTG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTAGATGGAATGCTTAATTTCCAATTACTCTTACTTTTTTG-TTGTTTG  949

seq1  TTTGTTTGTTTTGATGTTGTTTTTTTGAGATAAGAGTTTCTCTGTGTAGC  1000
      |||||||| |||||||||| ||||||||||  ||||||||||||||||||
seq2  TTTGTTTG-TTTGATGTTG-TTTTTTGAGAATAGAGTTTCTCTGTGTAGC  997

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC-TGGCATTGAACTCA  1049
      ||| |||||| ||  |||||||||||||||||||| |||||||||  |||
seq2  CCTTGCTGTCTTG--ACTCACTCTGTAGACCAGGCTTGGCATTGACTTCA  1045

seq1  GAAATCCACCTGCCTCTGCCTCCCAAGTG-CTGGGATTAAAGGAGTGTGC  1098
      |||   || |||| |||||||||  |||| |||||||| ||||| |||| 
seq2  GAA--TCAACTGCTTCTGCCTCC--AGTGCCTGGGATTTAAGGAATGTGG  1091

seq1  CGCCACCACCACCGGCTACTCTTACTTTATAATGTAAGCACTGAGGTAAT  1148
      |  || ||| ||  |||||||||||||||||| || |||||||| |||||
seq2  CCGCA-CACAAC--GCTACTCTTACTTTATAAGGT-AGCACTGA-GTAAT  1136

seq1  AT  1150
      ||
seq2  AT  1138


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