MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-260E07
Chromosome	18 (Build37)
Map Location	9,405,159 - 9,406,297
singlet/doublet	singlet
Overlap gene	Ccny
Upstream gene	EG433158, EG545242, LOC665161, Fzd8, 9430022F06Rik
Downstream gene	LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG433158 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433158 MGI:3647082
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 84 ESTs, 12 Proteins

name	EG545242 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545242 MGI:3643122
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins

name	LOC665161 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665161
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Fzd8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14370 MGI:108460
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9430022F06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225152 MGI:2444990
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccny (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67974 MGI:1915224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665176 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins pseudo : _no_value

name	LOC665184 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665184
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	EG639618 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:639618 MGI:3646110
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC100039755 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs

name	Cetn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26369 MGI:1347086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC225155 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:225155
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Colec12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140792 MGI:2152907
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665111 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665111
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins pseudo : _no_value

name	LOC100039787 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039787
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	EG433161 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 25 ESTs, 5 Proteins

name	Thoc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225160 MGI:1919668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rock1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19877 MGI:107927
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039978 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039978
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 4 Proteins

name	LOC635344 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635344
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC435554 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins pseudo : _no_value

name	AK220484 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381157 MGI:3576497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433158 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404266 GeneID:433158 MGI:3647082
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 mRNAs, 84 ESTs, 12 Proteins product : predicted gene, EG433158 transcript_id : XM_484699.4

name	EG545242 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94404267 GeneID:545242 MGI:3643122
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : predicted gene, EG545242 transcript_id : XM_619521.3

name	Fzd8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679886 GeneID:14370 MGI:108460
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : frizzled homolog 8 (Drosophila) transcript_id : NM_008058.1

name	9430022F06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348115 GeneID:225152 MGI:2444990
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9430022F06 gene transcript_id : NM_153086.4

name	Ccny (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385651 GeneID:67974 MGI:1915224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin Y transcript_id : NM_026484.3

name	LOC100039755 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269624 GeneID:100039755
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 17 ESTs product : hypothetical protein LOC100039755 transcript_id : XM_001473445.1

name	Cetn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109148537 GeneID:26369 MGI:1347086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrin 1 transcript_id : NM_007593.5

name	Colec12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18485493 GeneID:140792 MGI:2152907
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : collectin sub-family member 12 transcript_id : NM_130449.1

name	EG433161 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269632 GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein product : predicted gene, EG433161, transcript variant 1 transcript_id : XM_001473768.1

name	EG433161 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269631 GeneID:433161 MGI:3644023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins product : predicted gene, EG433161, transcript variant 2 transcript_id : XM_484701.5

name	Thoc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374372 GeneID:225160 MGI:1919668
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : THO complex 1 transcript_id : NM_153552.3

name	Usp14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95113658 GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 14 transcript_id : NM_001038589.2

name	Usp14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:95113661 GeneID:59025 MGI:1928898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 14 transcript_id : NM_021522.4

name	Rock1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134948665 GeneID:19877 MGI:107927
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho-associated coiled-coil containing protein kinase 1 transcript_id : NM_009071.2

name	LOC100039978 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269634 GeneID:100039978
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 9 ESTs, 4 Proteins product : similar to LSM6 homolog, U6 small nuclear RNA associated transcript_id : XM_001473903.1

name	AK220484 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134947987 GeneID:381157 MGI:3576497
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence AK220484 transcript_id : NM_001083628.1

name	EG433158 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63723564 GeneID:433158 MGI:3647082
definition	codon_start : 1 product : similar to src homology collagen protein 66 kDa protein_id : XP_484699.2

name	EG545242 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63723568 GeneID:545242 MGI:3643122
definition	codon_start : 1 product : hypothetical protein protein_id : XP_619521.1

name	Fzd8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679887 CCDS:CCDS29048.1 GeneID:14370 MGI:108460
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004926 - non-G-protein coupled 7TM receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0042813 - Wnt receptor activity [Evidence IPI]; GO:0017147 - Wnt-protein binding [Evidence IPI] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation product : frizzled 8 protein_id : NP_032084.1

name	9430022F06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30841034 CCDS:CCDS29049.1 GeneID:225152 MGI:2444990
definition	GO_component : GO:0005921 - gap junction [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] codon_start : 1 note : connexin39 product : connexin 39 protein_id : NP_694726.2

name	Ccny (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542003 CCDS:CCDS29050.1 GeneID:67974 MGI:1915224
definition	GO_process : GO:0000074 - regulation of progression through cell cycle [Evidence IEA] codon_start : 1 product : cyclin fold protein 1 protein_id : NP_080760.2

name	LOC100039755 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269625 GeneID:100039755
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473495.1

name	Cetn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76253942 GeneID:26369 MGI:1347086
definition	GO_component : GO:0005813 - centrosome [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA] codon_start : 1 note : testis-specific murine centrin product : centrin 1 protein_id : NP_031619.3

name	Colec12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18485494 GeneID:140792 MGI:2152907
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence ISS] GO_function : GO:0005534 - galactose binding [Evidence ISS]; GO:0030169 - low-density lipoprotein binding [Evidence ISS]; GO:0008329 - pattern recognition receptor activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005044 - scavenger receptor activity [Evidence ISS]; GO:0005529 - sugar binding [Evidence ISS] GO_process : GO:0019733 - antibacterial humoral response (sensu Vertebrata) [Evidence ISS]; GO:0019734 - antifungal humoral response (sensu Vertebrata) [Evidence ISS]; GO:0009756 - carbohydrate mediated signaling [Evidence ISS]; GO:0006955 - immune response [Evidence IDA]; GO:0045087 - innate immune response [Evidence ISS]; GO:0045194 - oxidized low-density lipoprotein catabolism [Evidence ISS]; GO:0006910 - phagocytosis, recognition [Evidence ISS] [Evidence IDA]; GO:0006817 - phosphate transport [Evidence IEA]; GO:0051260 - protein homooligomerization [Evidence ISS] codon_start : 1 exception : mismatches in translation product : collectin sub-family member 12 protein_id : NP_569716.1

name	EG433161 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51770771 GeneID:433161 MGI:3644023
definition	codon_start : 1 product : similar to developmental pluripotency associated 4 isoform 2 protein_id : XP_484701.1

name	EG433161 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269633 GeneID:433161 MGI:3644023
definition	codon_start : 1 product : similar to developmental pluripotency associated 4 isoform 1 protein_id : XP_001473818.1

name	Thoc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956332 GeneID:225160 MGI:1919668
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : THO complex 1 protein_id : NP_705780.1

name	Usp14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84452155 GeneID:59025 MGI:1928898
definition	GO_component : GO:0005625 - soluble fraction [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; dUB-type TGT for deubiquitinating enzyme; ataxia; ubiquitin specific protease 14 product : ubiquitin specific protease 14 isoform 2 protein_id : NP_001033678.1

name	Usp14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560313 GeneID:59025 MGI:1928898
definition	GO_component : GO:0005625 - soluble fraction [Evidence IDA]; GO:0019717 - synaptosome [Evidence IDA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA]; GO:0007268 - synaptic transmission [Evidence IMP]; GO:0006512 - ubiquitin cycle [Evidence IEA]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; dUB-type TGT for deubiquitinating enzyme; ataxia; ubiquitin specific protease 14 product : ubiquitin specific protease 14 isoform 1 protein_id : NP_067497.2

name	Rock1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677759 CCDS:CCDS29053.1 GeneID:19877 MGI:107927
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0043524 - negative regulation of neuron apoptosis [Evidence IMP]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : Rho-associated coiled-coil forming kinase 1 protein_id : NP_033097.1

name	LOC100039978 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269635 GeneID:100039978
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473953.1

name	LOC665161 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665161
definition	number : 1 pseudo : _no_value

name	LOC665161 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665161
definition	number : 2 pseudo : _no_value

name	LOC665161 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665161
definition	number : 3 pseudo : _no_value

name	LOC665161 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665161
definition	number : 4 pseudo : _no_value

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 1 pseudo : _no_value

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 2 pseudo : _no_value

name	LOC665184 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665184
definition	number : 3 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 1 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 2 pseudo : _no_value

name	EG639618 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:639618
definition	number : 3 pseudo : _no_value

name	LOC225155 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:225155
definition	number : 1 pseudo : _no_value

name	LOC665111 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665111
definition	number : 1 pseudo : _no_value

name	LOC100039787 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039787
definition	number : 1 pseudo : _no_value

name	LOC100039787 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039787
definition	number : 2 pseudo : _no_value

name	LOC635344 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:635344
definition	number : 2 pseudo : _no_value

name	LOC635344 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:635344
definition	number : 1 pseudo : _no_value

name	LOC665176 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269626 GeneID:665176
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 4 Proteins product : similar to CDNA sequence BC008163 pseudo : _no_value transcript_id : XR_031330.1

name	LOC435554 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149269636 GeneID:435554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to RAE1 RNA export 1 homolog (S. pombe) pseudo : _no_value transcript_id : XR_031452.1

clone name	MSMg01-427G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-232B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503K08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-462F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479B08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-182N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131C18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-436H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-155I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-346B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-118B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375G08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319L24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200H10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-093C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-228E02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148G21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033J16
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-260E07.b	B6Ng01-260E07.g
ACC	GA065232	GA065233
length	1,135	1,179
definition	B6Ng01-260E07.b	B6Ng01-260E07.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattctttatcagacacctccatttaccatttagaagaaaacagttgct tggccacacactaaagactgaagttaagacaagccagcatgaagcagtct tggcatttatttaaaaagagaaggaaagggctgaaaagatgcacagcagt caaaagtcagcactttttgctcttctagaggacccaggcttgactcctac cactgacatggtggctcacaaccatctggaactcattccagggggattaa gcacacatgtgagacacatgcatacacagaggaaaagcatccacagtgag tgagtgacttagtgactgagtgaatagaaggaagggctctcaggaaatga taaggtacatcccagagcctcagtgtggcttcccaaaggagagtcattct taagagatctagtgatgaccataggtagcatttgaaaactctaaaatttt gttgttcagaagatttctgaaagactccatctgtctgtttccctttttga ttgtggagactatagggattgtggaggtaccctcagtacaggtgtgctct gatgaaatcgggaaccactatgttttcaggaggcatttagggcatgtcct taacgttttctggtcagattataggaaactgcagatttgtaactggtgaa tacaatttgggttgtgtcttagtcagggtttctattcctggaccaaacat catgaccaagaagcagttggggaggaaagggtttattcagcttacacttc catattgcaattcatcactaaaggaaatcaggactggaactcaagcagtc agaagcaggagctaatgcagagaccatggagggatgttctttactggctt gcttcccctggcttgctcagtctgctctcttatagaaccaagactaccag cccagagatggtccgacccacaaggggcctttcccccttgatcactaatt gagaaaatgccttagagtgggatctcatggaggcatttcctcaactgaag ctcctttctctgtgataactccagctgtgtcaagttgacaccaaaactag ccagtacagtttggaattctttttattctattctatttatttttataatt catctaatgtggtatgatgccttgcctgcatgcat	gaattctcacctggggaataccgaatggctgagaaataactgaaaaaatg ttcagcatccttaatcatcaaggaaatgcaaatcaaaacatccctgagat tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc agatgctggcgaggatgtggagaagaggaacactccaccattgttggtgg aattccaagcttgtacaaccactctggaaatgattctggcagttcctcag aaaataggacaaagtactactggaggatcccgcaatacttctcctggtca aatatccagaagatgttccaattggtaaggacacatgctccactatgttc atagcagccttacttacaatagccagaagctggaaagaacccaaatgtcc ctcaacagaggaatggatacagaaaatgtggtacatttatacaatggagt actactcagctattaaaaagaatgaatttatgaaattcctaggcaaatgg atggcagtggagggcatcatcctgagtgaggtaacccaatcacaaaagaa ctcacatgatacgtattcactgataagtggatattagttcagaaacttag aataaccaagatacaagatacaatttgcaaaacacatgaaactcaagaag aatgaagaccaaagtgtggacaccttgccccttcgtagaattgggaacaa aacatccatggaaggagtttcagtgacaaagtttggagctgagaggaaag gatggacaatctagactgccccacctgagtatccattccataatcagcct ccaaaagatgacaccattgcatacaccagaaagattttgttgaaaggatc ctgatatagctgtctcttgtgaggctatgctggggcctagcaaacacaga aatggatgctcacagtcagctattggatggaacacaggtccccaatggag gagctagagaaagtacccaagagctaagaggtctgcagccctacaggtgg aacacagtatgataccagtactcctgagctcgtgtctctagctgcatatg tagcagagatgcctatcggcatcatggaagaagagaacccttgttgttgc caacttatattctcagtataaggaaccaggcagaatgtcatgcgcgttgg ggaagacgcctattggggctctcttgtac
quality values	Open. Hide. 58 31 27 39 62 62 62 62 47 56 47 37 25 51 62 51 56 62 62 62 62 44 39 62 49 49 59 62 59 43 62 62 59 59 59 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 59 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 42 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 59 62 62 54 62 59 59 59 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 62 56 62 51 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 62 62 62 62 47 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 58 58 58 58 58 58 58 58 58 58 58 52 58 58 58 58 54 58 58 58 58 58 46 46 54 58 58 58 58 58 58 58 58 58 58 54 47 52 58 58 39 58 54 49 58 58 52 58 41 58 58 52 54 54 58 58 58 58 58 54 54 58 54 58 54 58 41 41 52 58 58 58 50 54 42 52 54 33 49 52 53 54 48 58 58 58 51 50 58 58 51 53 46 58 37 58 58 58 50 51 58 49 58 58 58 50 51 58 54 46 49 49 35 49 51 58 58 58 58 51 40 58 54 46 54 52 53 53 52 52 32 54 53 50 50 58 58 50 58 54 53 53 50 51 51 50 49 50 49 48 43 27 50 31 44 53 50 33 51 50 50 51 58 33 40 50 27 58 34 58 44 27 58 51 37 50 43 58 26 19 43 46 24 44 44 58 43 33 58 58 33 58 50 39 37 49 41 52 42 51 54 49 40 49 51 47 53 53 41 53 31 38 45 39 54 45 40 29 38 46 44 37 34 52 45 32 30 49 45 54 41 39 53 25 54 30 42 40 45 20 54 42 26 31 47 46 38 39 40 45 37 33 30 38 52 6 10 11 32 6 7 22 30 24 34 34 16 51 41 21 41 34 31 32 32 53 31 37 23 51 15 26 18 21 25 29 33 52 53 13 49 51 26 20 41 31 26 40 39 51 42 32 31 31 51 23 25 41 31 35 32 26 9 23 51 46 29 28 27 30 30 43 31 33 23 31 26 26 30 35 33 31 37 31 31 31 29 31 25 37 35 32 43 21 43 38 24 30 32 43 24 31 20 38 31 25 31 32 26 31 46 42 34 24 46 19 30 13 32 33 24 37 37 24 29 17 46 38 28 30 19 8 13 32 31 23 23 32 31 48 27 29 31 32 33 23 17 17 24 31 35 25 22 31 32 26 31 26 22 33 33 20 31 44 44 25 25 38 21 14 27 15 26 7 31 11 29 8 41 8 22 21 22 24 26 22 31 25 25 31 18 32 28 21 29 48 32 32 22 23 19 13 22 25 32 32 19 26 24 32 32 14 33 15 48 32 23 20 18 10 23 15 24 27 12 11 32 22 17 15 31 24 32 32 22 17 14 20 24 24 27 17 14 18 9 17 28 12 9 9 16 7 30 38 24 15 26 24 24 21 27 14 22 13 13 16 7 28 19 40 15 8 21 15 15 15 10 27 23 47 40 47 14 10 7 17 27 9 17 20 14 20 5 11 5 32 24 14 13 38 47 26 6 6 5 2 11 14 10 21 16 9 13 11 5 7 10 11 6 4 2 4 9 6 8 8 6 22 8 7 21 11 10 9 9 11 18 15 15 9 23 13 7 7	Open. Hide. 62 47 51 47 62 62 62 47 42 62 62 62 62 62 62 62 59 59 51 62 59 62 62 62 62 62 62 62 59 62 62 59 46 54 62 62 62 62 62 62 62 62 59 54 49 62 62 54 54 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 49 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 54 62 62 59 62 62 62 62 62 62 59 59 62 50 54 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 59 56 59 62 62 62 62 62 62 62 59 59 62 62 54 59 62 62 62 62 62 62 62 49 49 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 59 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 54 47 62 62 62 62 62 62 62 54 62 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 46 58 58 58 58 58 58 58 58 58 58 47 58 58 54 58 58 58 54 58 58 58 58 58 54 54 58 58 58 46 58 54 58 58 58 58 58 48 58 58 58 58 58 52 58 58 58 51 58 54 53 58 58 54 53 54 58 58 58 54 54 58 58 58 58 58 58 58 52 58 58 58 58 51 58 58 58 58 58 38 44 50 58 41 51 54 51 58 54 53 53 51 58 58 43 58 58 54 49 53 58 41 42 52 41 58 46 37 58 51 51 53 52 54 50 58 51 51 41 52 51 50 58 51 58 58 58 51 51 58 58 54 51 50 51 50 58 58 58 58 51 52 58 52 40 58 42 58 54 40 58 50 35 53 58 52 42 39 31 53 41 54 51 52 53 54 52 54 47 49 45 32 46 53 53 47 51 40 49 49 44 44 44 45 38 52 49 32 53 50 39 51 32 36 51 33 28 32 52 54 54 42 52 35 53 39 44 32 42 51 46 34 41 18 54 47 27 40 54 52 45 39 45 40 46 28 33 25 54 51 40 39 53 30 47 27 31 21 42 52 34 44 17 53 31 52 42 49 47 24 52 32 28 33 40 27 32 31 53 32 45 35 31 28 42 35 37 45 32 51 51 45 30 30 45 31 31 46 20 30 32 31 24 43 29 51 45 29 42 31 37 21 30 31 31 31 31 33 45 31 30 28 24 51 51 30 26 30 22 32 31 28 30 33 38 31 43 31 30 29 21 30 32 36 28 32 44 31 19 48 46 44 28 18 8 46 46 31 37 31 31 27 31 48 41 31 36 27 31 23 39 32 36 27 24 24 37 35 35 35 37 31 27 30 37 36 20 25 32 21 30 26 28 19 11 31 29 23 31 32 31 34 47 48 31 22 29 36 33 27 29 33 48 31 28 21 37 24 35 38 48 32 25 29 28 10 20 31 24 31 31 21 19 16 31 25 34 33 33 34 32 18 19 31 17 28 8 17 20 13 10 9 16 24 25 4 5 4 6 22 34 33 21 7 18 31 22 26 10 4 5 25 9 34 27 17 17 32 10 21 43 23 27 23 32 24 39 27 7 9 4 5 16 32 30 33 32 21 32 10 16 14 23 24 28 27 19 10 21 30 15 24 19 26 11 21 10 16 10 19 9 3 6 27 7 10 23 16 15 24 13 16 5 5 13 19 17 27 13 27 16 14 8 24 11 12 4 6 27 17 16 6 5 6 10 18 11 16 27 20 13 24 21 16 20 9 16 16 16 21 21 20 12 10 10 7 20 4 8 5 13 2 8 16 18 4 7 9 8 7 9 21 18 13 22 11 11 3 6 5 6 8 4 5 6 6 7 12 26 13 2 3 4 1 3 5 5 12 8 8 5 21 19 7 3 3 4 5 7 8 12 3 2 4 12 4 5 7 16 4 4 5 14 10 9 5 3 3 4 10 5 3 6 5 5 1 2 1 3 3 8 5 9 5 1 5 3 2 6 27 26 9 4 9 5 25 5 17 3 1 4 6 7 10 7 12 7 4 3 3 4 19 5 15 5 5 4 6 4

Alignment Information

BAC End 1

BAC End 2

seq1: chr18_9405159_9406297
seq2: B6Ng01-260E07.b_43_1177 (reverse)

seq1  ATGCATGCAAGCAAAGCATTCATA-CACATAAGATGAATTAATTAAAAAT  49
      ||||||||| |||| ||| ||||| ||||| ||||||||||  |||||||
seq2  ATGCATGCAGGCAAGGCA-TCATACCACATTAGATGAATTA--TAAAAAT  47

seq1  AAAATAGAATAGAATAAAAAGAATTCCAAACTGTACTGGCTAGTTTT-GT  98
       |||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  -AAATAGAATAGAATAAAAAGAATTCCAAACTGTACTGGCTAGTTTTGGT  96

seq1  GTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAG  146

seq1  GAAATGCCTCCATGAGATCCAACTCTAAGGCATTTTCTCAATTAGTGATC  198
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAATGCCTCCATGAGATCCCACTCTAAGGCATTTTCTCAATTAGTGATC  196

seq1  AAGGGGGAAAGGCCCCTTGTGGGTCGGACCATCTCTGGGCTGGTAGTCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAAAGGCCCCTTGTGGGTCGGACCATCTCTGGGCTGGTAGTCTT  246

seq1  GGTTCTATAAGAGAGCAGACTGAGCAAGCCAGGGGAAGCAAGCCAGTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATAAGAGAGCAGACTGAGCAAGCCAGGGGAAGCAAGCCAGTAAA  296

seq1  GAACATCCCTCCATGGTCTCTGCATTAGCTCCTGCTTCCTGACCTGCTTG  348
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  GAACATCCCTCCATGGTCTCTGCATTAGCTCCTGCTT-CTGA-CTGCTTG  344

seq1  AGTTCCAGTCCTGATTTCCTTTAGTGATGAATTGCAATATGGAAGTGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGTCCTGATTTCCTTTAGTGATGAATTGCAATATGGAAGTGTAA  394

seq1  GCTGAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGGT  444

seq1  CCAGGAATAGAAACCCTGACTAAGACACAACCCAAATTGTATTCACCAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATAGAAACCCTGACTAAGACACAACCCAAATTGTATTCACCAGT  494

seq1  TACAAATCTGCAGTTTCCTATAATCTGACCAGAAAACGTTAAGGACATGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTGCAGTTTCCTATAATCTGACCAGAAAACGTTAAGGACATGC  544

seq1  CCTAAATGCCTCCTGAAAACATAGTGGTTCCCGATTTCATCAGAGCACAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGCCTCCTGAAAACATAGTGGTTCCCGATTTCATCAGAGCACAC  594

seq1  CTGTACTGAGGGTACCTCCACAATCCCTATAGTCTCCACAATCAAAAAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGAGGGTACCTCCACAATCCCTATAGTCTCCACAATCAAAAAGG  644

seq1  GAAACAGACAGATGGAGTCTTTCAGAAATCTTCTGAACAACAAAATTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGACAGATGGAGTCTTTCAGAAATCTTCTGAACAACAAAATTTTA  694

seq1  GAGTTTTCAAATGCTACCTATGGTCATCACTAGATCTCTTAAGAATGACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCAAATGCTACCTATGGTCATCACTAGATCTCTTAAGAATGACT  744

seq1  CTCCTTTGGGAAGCCACACTGAGGCTCTGGGATGTACCTTATCATTTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGGGAAGCCACACTGAGGCTCTGGGATGTACCTTATCATTTCCT  794

seq1  GAGAGCCCTTCCTTCTATTCACTCAGTCACTAAGTCACTCACTCACTGTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCCTTCCTTCTATTCACTCAGTCACTAAGTCACTCACTCACTGTG  844

seq1  GATGCTTTTCCTCTGTGTATGCATGTGTCTCACATGTGTGCTTAATCCCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTTCCTCTGTGTATGCATGTGTCTCACATGTGTGCTTAATCCCC  894

seq1  CTGGAATGAGTTCCAGATGGTTGTGAGCCACCATGTCAGTGGTAGGAGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAGTTCCAGATGGTTGTGAGCCACCATGTCAGTGGTAGGAGTC  944

seq1  AAGCCTGGGTCCTCTAGAAGAGCAAAAAGTGCTGACTTTTGACTGCTGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGTCCTCTAGAAGAGCAAAAAGTGCTGACTTTTGACTGCTGTG  994

seq1  CATCTTTTCAGCCCTTTCCTTCTCTTTTTAAATAAATGCCAAGACTGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCAGCCCTTTCCTTCTCTTTTTAAATAAATGCCAAGACTGCTT  1044

seq1  CATGCTGGCTTGTCTTAACTTCAGTCTTTAGTGTGTGGCCAAGCAACTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGCTTGTCTTAACTTCAGTCTTTAGTGTGTGGCCAAGCAACTGT  1094

seq1  TTTCTTCTAAATGGTAAATGGAGGTGTCTGATAAAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAAATGGTAAATGGAGGTGTCTGATAAAGAATTC  1135

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Alignment Information