BAC Information

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BAC

Clone NameB6Ng01-260L07
Chromosome18 (Build37)
Map Location 47,291,024 - 47,466,290
singlet/doubletdoublet
Overlap geneLOC667120, Sema6a
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438
Downstream geneLOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260L07.bB6Ng01-260L07.g
ACCGA065562GA065563
length1,0431,122
definitionB6Ng01-260L07.b B6Ng01-260L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,291,024 - 47,292,062)(47,465,157 - 47,466,290)
sequence
gaattctctttatggaaccagggcccaaaaggctccatgagcatctagca
gcctggggaaccacgggctacacatcccccttgatctattcgacagttgg
ctttgccccatatccagcacagagggaacaagttgcaaggatttttgggg
gtaagaagtaaaactataggagcacgagaggaaatcctgtgagcagaagt
caccttccatagagaagacctaacaacatcacgcacaaccggaagggcat
aaggagcagagtaaacacttgggggcaaagcccatcattagttaaatcaa
aatgcaaataagccaaagaatatattcactaccttaatcatagaagaatg
tcgtgatctgagtagaataagattgtataacaaataagcaaaccttcaac
aaaaggggaaatattttaaaaataaaagcagcttctggagaaggagatat
tcttgtgtgtgagaaaggctgcttagtctcttgcccagtattcgtgtctc
cctctcaggcccttgaagattacagcatttgctgacagtctgtgggtgac
agcactggctgtgacaatctttcccaacaccaggcagagcaccttcagac
tgctagctgagacttagcatggtaaaagtcacaccctggaagtcagaaag
taccactacaaattcagtctccttcacctccccggaaaaccagttaccat
cggctgagagtgtgtgggaactaagcccccttgagactgtttggtatata
aaggagtgaagtgtttacacggcactgttgtcaatatctagcaaggttat
tgatgacatacatcttttgcagctacagctctacttcagggatcggcact
gatatccttcatgtaaagcaaacatgaactcacaggcatcttcctgtgtg
gatgcccgtggatgggctgattgggtttgtaaactgtagtactgctgtgg
cttgcctgactgggatcctagtaacctgacctagcaatgtaccaggtgat
aagaaagactgacacagtaatgatgagctaggatgggttggct
gaattcactgtggacaaggcagggaacagaagccttttgtcttgaatcat
cttcaagaccgttgcattttatagaactgaatgaagctgacttgcaaaaa
gagagaaaacgagaagtaagcaggctcttttgctctttggcagggtgaag
tagagaagcaagtccccccgctgaacctactatgcggccagcagccttac
tgctgtgtctcacactgctacactgcgctggggctggtttcccagaagat
tccgagccaatcagtatttcgcatggcaactgtaagtatcatactctcac
tctcacttggcttttgagggcatcttagcctgcatcagcccagccaaaag
ttaaaaggaacccggagagacccagtcattttcaactgcatgtgtgacaa
ggataggtgatttcacagcaggttggtcggacggagctggatggataggg
agactgttcatagcttcatcaagtgttgtagcaacaccagcaagcctttg
aaatgtccctcgagcctcctgatgaaattttactctacacacagaggcat
actcctgcctccacaccagctacaggagagaatattgctgacatttgagg
actgagagtgttatgtttttaatttgtaacctttatgtataaaataatgg
gtgttttttacatacttaagaagaaaaaaataataactttttaaaaaagc
cttagaagcttgctactcttagcaagcggctggctttggagctatagaaa
attcattccatttataactttattctgatacctggtttttgtcagaggta
gatgctgacataactagaactactggtgactccctaaaagaggaaagtct
tccctctgttttggaaagaatacctgattcctattttactgtctcctcca
aaaggcatttgtgtcccagtaaaggtggacaacatttttgtcagtaccat
ttcctatgtagttattccaacagttgagtgaccataccaaagatgtccag
gatattacacagaagtacatacacagtgctgagcttcagctgggaattct
ggagaggagatgattttatatacaagatgaggccagctgattattaacag
tgggtggcagagtccaaggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_47291024_47292062
seq2: B6Ng01-260L07.b_42_1084

seq1  GAATTCTCTTTATGGAACCAGGGCCCAAAAGGCTCCATGAGCATCTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTATGGAACCAGGGCCCAAAAGGCTCCATGAGCATCTAGCA  50

seq1  GCCTGGGGAACCACGGGCTACACATCCCCCTTGATCTATTCGACAGTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGAACCACGGGCTACACATCCCCCTTGATCTATTCGACAGTTGG  100

seq1  CTTTGCCCCATATCCAGCACAGAGGGAACAAGTTGCAAGGATTTTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCCCATATCCAGCACAGAGGGAACAAGTTGCAAGGATTTTTGGGG  150

seq1  GTAAGAAGTAAAACTATAGGAGCACGAGAGGAAATCCTGTGAGCAGAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGTAAAACTATAGGAGCACGAGAGGAAATCCTGTGAGCAGAAGT  200

seq1  CACCTTCCATAGAGAAGACCTAACAACATCACGCACAACCGGAAGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCCATAGAGAAGACCTAACAACATCACGCACAACCGGAAGGGCAT  250

seq1  AAGGAGCAGAGTAAACACTTGGGGGCAAAGCCCATCATTAGTTAAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCAGAGTAAACACTTGGGGGCAAAGCCCATCATTAGTTAAATCAA  300

seq1  AATGCAAATAAGCCAAAGAATATATTCACTACCTTAATCATAGAAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATAAGCCAAAGAATATATTCACTACCTTAATCATAGAAGAATG  350

seq1  TCGTGATCTGAGTAGAATAAGATTGTATAACAAATAAGCAAACCTTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATCTGAGTAGAATAAGATTGTATAACAAATAAGCAAACCTTCAAC  400

seq1  AAAAGGGGAAATATTTTAAAAATAAAAGCAGCTTCTGGAGAAGGAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGAAATATTTTAAAAATAAAAGCAGCTTCTGGAGAAGGAGATAT  450

seq1  TCTTGTGTGTGAGAAAGGCTGCTTAGTCTCTTGCCCAGTATTCGTGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGTGTGAGAAAGGCTGCTTAGTCTCTTGCCCAGTATTCGTGTCTC  500

seq1  CCTCTCAGGCCCTTGAAGATTACAGCATTTGCTGACAGTCTGTGGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGCCCTTGAAGATTACAGCATTTGCTGACAGTCTGTGGGTGAC  550

seq1  AGCACTGGCTGTGACAATCTTTCCCAACACCAGGCAGAGCACCTTCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGCTGTGACAATCTTTCCCAACACCAGGCAGAGCACCTTCAGAC  600

seq1  TGCTAGCTGAGACTTAGCATGGTAAAAGTCACACCCTGGAAGTCAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTGAGACTTAGCATGGTAAAAGTCACACCCTGGAAGTCAGAAAG  650

seq1  TACCACTACAAATTCAGTCTCCTTCACCTCCCCGGAAAACCAGTTACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTACAAATTCAGTCTCCTTCACCTCCCCGGAAAACCAGTTACCAT  700

seq1  CGGCTGAGAGTGTGTGGGAACTAAGCCCCCTTGAGACTGTTTGGTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGAGAGTGTGTGGGAACTAAGCCCCCTTGAGACTGTTTGGTATATA  750

seq1  AAGGAGTGAAGTGTTTACACGGCACTGTTGTCAATATCTAGCAAGGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGAAGTGTTTACACGGCACTGTTGTCAATATCTAGCAAGGTTAT  800

seq1  TGATGACATACATCTTTTGCAGCAACAGCTCTACTTCAGGGATCGGCACT  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATGACATACATCTTTTGCAGCTACAGCTCTACTTCAGGGATCGGCACT  850

seq1  GATATCCTTCATGT-AAGCAAACATGAACTCACAGGCATCTTCCTGTGTG  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATATCCTTCATGTAAAGCAAACATGAACTCACAGGCATCTTCCTGTGTG  900

seq1  GATGCCTGTGGATGGG-TGATT-GGTTTGTAAACTGTGGGACTGCTGTGG  947
      |||||| ||||||||| ||||| |||||||||||||| | ||||||||||
seq2  GATGCCCGTGGATGGGCTGATTGGGTTTGTAAACTGTAGTACTGCTGTGG  950

seq1  C-TGCCTAACTGGG-TCCTAGAAACCTGACTTGG--AAGTACGAGGTGAT  993
      | ||||| |||||| |||||| |||||||| | |  | |||| |||||||
seq2  CTTGCCTGACTGGGATCCTAGTAACCTGACCTAGCAATGTACCAGGTGAT  1000

seq1  AAAGAAAGACAGACACAAGTAATGAGAAGCTAGGGTTGGGTGGGCT  1039
       ||||||||| ||||| ||||||||  ||||| || ||||| ||||
seq2  -AAGAAAGACTGACAC-AGTAATGATGAGCTA-GGATGGGTTGGCT  1043

seq1: chr18_47465157_47466290
seq2: B6Ng01-260L07.g_65_1186 (reverse)

seq1  TGACCT-----TCTGCCCACCCACTGTTATATAATTCAGGCTTGGCTCCT  45
      ||||||     |||| ||||||||||||| |||| ||||   |||  |||
seq2  TGACCTTGGACTCTG-CCACCCACTGTTA-ATAA-TCAG--CTGG--CCT  43

seq1  CATCTTTGTATATAAAATCATCTCCTTCTCCAGAAATCCCAGCTGGAAGC  95
      |||| |||||||||||||||||||| ||||||||| |||||||| |||||
seq2  CATC-TTGTATATAAAATCATCTCC-TCTCCAGAATTCCCAGCT-GAAGC  90

seq1  TCAGCACTGGTGTATGTACTTTCTGTGTAATATCCTGGACATCTTTTGGT  145
      |||||||| |||||||||| ||||||||||||||||||||||| ||||||
seq2  TCAGCACT-GTGTATGTAC-TTCTGTGTAATATCCTGGACATC-TTTGGT  137

seq1  ATGGTCCACTC-ACTGTTTGGGAATAACTACATAGGAAATGGTACTTGAC  194
      ||||| ||||| ||||||  ||||||||||||||||||||||||| ||||
seq2  ATGGT-CACTCAACTGTT--GGAATAACTACATAGGAAATGGTAC-TGAC  183

seq1  AAAAATGTTGTCCACCTTTACTGGGACACAATTGCCTTTTGGAGGGAGAC  244
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  AAAAATGTTGTCCACCTTTACTGGGACACAAATGCCTTTTGGA-GGAGAC  232

seq1  AGTAAAATAGGAATCAGGTATTCTTTCCAAAACAGAGGGAAGACTTTCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATAGGAATCAGGTATTCTTTCCAAAACAGAGGGAAGACTTTCCT  282

seq1  CTTTTAGGGAGTCACCAGTAGTTCTAGTTATGTCAGCATCTACCTCTGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGGAGTCACCAGTAGTTCTAGTTATGTCAGCATCTACCTCTGAC  332

seq1  AAAAACCAGGTATCAGAATAAAGTTATAAATGGAATGAATTTTCTATAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAGGTATCAGAATAAAGTTATAAATGGAATGAATTTTCTATAGC  382

seq1  TCCAAAGCCAGCCGCTTGCTAAGAGTAGCAAGCTTCTAAGGCTTTTTTAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCCAGCCGCTTGCTAAGAGTAGCAAGCTTCTAAGGCTTTTTTAA  432

seq1  AAAGTTATTATTTTTTTCTTCTTAAGTATGTAAAAAACACCCATTATTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTATTTTTTTCTTCTTAAGTATGTAAAAAACACCCATTATTTT  482

seq1  ATACATAAAGGTTACAAATTAAAAACATAACACTCTCAGTCCTCAAATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAAGGTTACAAATTAAAAACATAACACTCTCAGTCCTCAAATGT  532

seq1  CAGCAATATTCTCTCCTGTAGCTGGTGTGGAGGCAGGAGTATGCCTCTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATTCTCTCCTGTAGCTGGTGTGGAGGCAGGAGTATGCCTCTGT  582

seq1  GTGTAGAGTAAAATTTCATCAGGAGGCTCGAGGGACATTTCAAAGGCTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAGTAAAATTTCATCAGGAGGCTCGAGGGACATTTCAAAGGCTTG  632

seq1  CTGGTGTTGCTACAACACTTGATGAAGCTATGAACAGTCTCCCTATCCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTGCTACAACACTTGATGAAGCTATGAACAGTCTCCCTATCCAT  682

seq1  CCAGCTCCGTCCGACCAACCTGCTGTGAAATCACCTATCCTTGTCACACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCGTCCGACCAACCTGCTGTGAAATCACCTATCCTTGTCACACA  732

seq1  TGCAGTTGAAAATGACTGGGTCTCTCCGGGTTCCTTTTAACTTTTGGCTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGAAAATGACTGGGTCTCTCCGGGTTCCTTTTAACTTTTGGCTG  782

seq1  GGCTGATGCAGGCTAAGATGCCCTCAAAAGCCAAGTGAGAGTGAGAGTAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGCAGGCTAAGATGCCCTCAAAAGCCAAGTGAGAGTGAGAGTAT  832

seq1  GATACTTACAGTTGCCATGCGAAATACTGATTGGCTCGGAATCTTCTGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTACAGTTGCCATGCGAAATACTGATTGGCTCGGAATCTTCTGGG  882

seq1  AAACCAGCCCCAGCGCAGTGTAGCAGTGTGAGACACAGCAGTAAGGCTGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCCCAGCGCAGTGTAGCAGTGTGAGACACAGCAGTAAGGCTGC  932

seq1  TGGCCGCATAGTAGGTTCAGCGGGGGGACTTGCTTCTCTACTTCACCCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCATAGTAGGTTCAGCGGGGGGACTTGCTTCTCTACTTCACCCTG  982

seq1  CCAAAGAGCAAAAGAGCCTGCTTACTTCTCGTTTTCTCTCTTTTTGCAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGCAAAAGAGCCTGCTTACTTCTCGTTTTCTCTCTTTTTGCAAG  1032

seq1  TCAGCTTCATTCAGTTCTATAAAATGCAACGGTCTTGAAGATGATTCAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTCATTCAGTTCTATAAAATGCAACGGTCTTGAAGATGATTCAAG  1082

seq1  ACAAAAGGCTTCTGTTCCCTGCCTTGTCCACAGTGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGCTTCTGTTCCCTGCCTTGTCCACAGTGAATTC  1122