BAC Information

Click to search

BAC

Clone NameB6Ng01-260M01
Chromosome18 (Build37)
Map Location 44,479,512 - 44,626,559
singlet/doubletdoublet
Overlap geneMyot, Dcp2, Mcc
Upstream geneDpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260M01.bB6Ng01-260M01.g
ACCGA065597GA065598
length676666
definitionB6Ng01-260M01.b B6Ng01-260M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,479,512 - 44,480,187)(44,625,871 - 44,626,559)
sequence
gaattccatgaagaaagtattccaagggacaggtacacttgcaagacata
accttggctgatttagggaaataagagagtccctcaagaggacctgtttt
caaacttccagttccctcgtatgagctaaacaagtctgcagcattggggg
acagagacaggtagatccaaagagttcgccggccatccagcctagcaaaa
atcatgtcctccatgttcagtgagaaaacatatctccaaaaatataaggt
aataataataatagagggagacaggtgatattctgctctggttccacatg
gacatgtacccatacatataactgctcatatatccctacacacctatatc
agcacacacacaaacacaacatacacatacatgcacacagaggtaaaata
aatacatgaaagtaataattttatttttaaaataaatttgtttattgttt
aaaagacaatgaggctcttacatctaataaagcttgctcctgacgcctct
caggaataaggtcatttcagacactggacactgagtccctgcaagtacta
tacaacacttctctgaaccctgggcctctgccaccaaaaccaccataacc
actgctccttttattcatcaagaagaacaataaggatgaggaagagcacg
gaggaggaggaggaggaggaggagga
gaattcattttgtgttgggcaactactcctggcattgggcctgccctgga
gtgttttatatacccagtgacatcccatgggagaaaactgattttccctt
ttgtgagcaggtatccgttgcatatagttatggttaggagtgggagccca
tgtctgcttctgctatcagtgctgggagcctgtgtgacttgaacctgtgc
aggtctcacacatgcctggcacaggttttaaattgtacataatagtctac
acttatcttggatggctgaatccaaagctacatattttatgcctttaaca
ttgctcatttttctaaaagacctttgaagacactgggcattaaaataatt
caacagtaaaaagcctgatgcagataatattgtcattctttacatgcttt
ccttgggataactttcccaaagcagaagacatgagtatcatcagagctct
tcagttggtttccattaaaaagatgccagttgattacaggcatggtgata
ggcttatgcctttaatcccagcacttcaagacaggcggatctctgtgagt
ttgaagccagcctggtctaccgcatgagttcctggacagagagggctaca
aagagaaaccctatattaaaagagaaaggagaaggagaaggagaaggaga
aggaaaaggagaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_44479512_44480187
seq2: B6Ng01-260M01.b_42_717

seq1  GAATTCCATGAAGAAAGTATTCCAAGGGACAGGTACACTTGCAAGACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAAGAAAGTATTCCAAGGGACAGGTACACTTGCAAGACATA  50

seq1  ACCTTGGCTGATTTAGGGAAATAAGAGAGTCCCTCAAGAGGACCTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGCTGATTTAGGGAAATAAGAGAGTCCCTCAAGAGGACCTGTTTT  100

seq1  CAAACTTCCAGTTCCCTCGTATGAGCTAAACAAGTCTGCAGCATTGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCCAGTTCCCTCGTATGAGCTAAACAAGTCTGCAGCATTGGGGG  150

seq1  ACAGAGACAGGTAGATCCAAAGAGTTCGCCGGCCATCCAGCCTAGCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACAGGTAGATCCAAAGAGTTCGCCGGCCATCCAGCCTAGCAAAA  200

seq1  ATCATGTCCTCCATGTTCAGTGAGAAAACATATCTCCAAAAATATAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCCTCCATGTTCAGTGAGAAAACATATCTCCAAAAATATAAGGT  250

seq1  AATAATAATAATAGAGGGAGACAGGTGATATTCTGCTCTGGTTCCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAATAGAGGGAGACAGGTGATATTCTGCTCTGGTTCCACATG  300

seq1  GACATGTACCCATACATATAACTGCTCATATATCCCTACACACCTATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTACCCATACATATAACTGCTCATATATCCCTACACACCTATATC  350

seq1  AGCACACACACAAACACAACATACACATACATGCACACAGAGGTAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACACACAAACACAACATACACATACATGCACACAGAGGTAAAATA  400

seq1  AATACATGAAAGTAATAATTTTATTTTTAAAATAAATTTGTTTATTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAAAGTAATAATTTTATTTTTAAAATAAATTTGTTTATTGTTT  450

seq1  AAAAGACAATGAGGCTCTTACATCTAATAAAGCTTGCTCCTGACGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAATGAGGCTCTTACATCTAATAAAGCTTGCTCCTGACGCCTCT  500

seq1  CAGGAATAAGGTCATTTCAGACACTGGACACTGAGTCCCTGCAAGTACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAAGGTCATTTCAGACACTGGACACTGAGTCCCTGCAAGTACTA  550

seq1  TACAACACTTCTCTGAACCCTGGGCCTCTGCCACCAAAACCACCATAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACTTCTCTGAACCCTGGGCCTCTGCCACCAAAACCACCATAACC  600

seq1  ACTGCTCCTTTTATTCATCAAGAAGAACAATAAGGATGAGGAAGAGCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCCTTTTATTCATCAAGAAGAACAATAAGGATGAGGAAGAGCACG  650

seq1  GAGGAGGAGGAGGAGGAGGAGGAGGA  676
      ||||||||||||||||||||||||||
seq2  GAGGAGGAGGAGGAGGAGGAGGAGGA  676

seq1: chr18_44625871_44626559
seq2: B6Ng01-260M01.g_64_729 (reverse)

seq1  TCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCCTTCTC  50
                        ||||||||||| ||||||||||||||||||||
seq2  ------------------TCCTTCTCCTTTTCCTTCTCCTTCTCCTTCTC  32

seq1  CTTCTCCTTCTCCTTCTCTTTTAATATAGGGTTTCTCTTTGTAGCCCTCT  100
      ||||||||     |||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCT-----TTCTCTTTTAATATAGGGTTTCTCTTTGTAGCCCTCT  77

seq1  CTGTCCAGGAACTCATGCGGTAGACCAGGCTGGCTTCAAACTCACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGAACTCATGCGGTAGACCAGGCTGGCTTCAAACTCACAGAGA  127

seq1  TCCGCCTGTCTTGAAGTGCTGGGATTAAAGGCATAAGCCTATCACCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTGTCTTGAAGTGCTGGGATTAAAGGCATAAGCCTATCACCATGC  177

seq1  CTGTAATCAACTGGCATCTTTTTAATGGAAACCAACTGAAGAGCTCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCAACTGGCATCTTTTTAATGGAAACCAACTGAAGAGCTCTGAT  227

seq1  GATACTCATGTCTTCTGCTTTGGGAAAGTTATCCCAAGGAAAGCATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCATGTCTTCTGCTTTGGGAAAGTTATCCCAAGGAAAGCATGTAA  277

seq1  AGAATGACAATATTATCTGCATCAGGCTTTTTACTGTTGAATTATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAATATTATCTGCATCAGGCTTTTTACTGTTGAATTATTTTAA  327

seq1  TGCCCAGTGTCTTCAAAGGTCTTTTAGAAAAATGAGCAATGTTAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGTCTTCAAAGGTCTTTTAGAAAAATGAGCAATGTTAAAGGCA  377

seq1  TAAAATATGTAGCTTTGGATTCAGCCATCCAAGATAAGTGTAGACTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGTAGCTTTGGATTCAGCCATCCAAGATAAGTGTAGACTATTA  427

seq1  TGTACAATTTAAAACCTGTGCCAGGCATGTGTGAGACCTGCACAGGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATTTAAAACCTGTGCCAGGCATGTGTGAGACCTGCACAGGTTCA  477

seq1  AGTCACACAGGCTCCCAGCACTGATAGCAGAAGCAGACATGGGCTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACACAGGCTCCCAGCACTGATAGCAGAAGCAGACATGGGCTCCCAC  527

seq1  TCCTAACCATAACTATATGCAACGGATACCTGCTCACAAAAGGGAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACCATAACTATATGCAACGGATACCTGCTCACAAAAGGGAAAATC  577

seq1  AGTTTTCTCCCATGGGATGTCACTGGGTATATAAAACACTCCAGGGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCCCATGGGATGTCACTGGGTATATAAAACACTCCAGGGCAGG  627

seq1  CCCAATGCCAGGAGTAGTTGCCCAACACAAAATGAATTC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCCAGGAGTAGTTGCCCAACACAAAATGAATTC  666