BAC Information

Click to search

BAC

Clone NameB6Ng01-260P03
Chromosome18 (Build37)
Map Location 65,117,178 - 65,260,596
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260P03.bB6Ng01-260P03.g
ACCGA065740GA065741
length1,2031,074
definitionB6Ng01-260P03.b B6Ng01-260P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,117,178 - 65,118,395)(65,259,532 - 65,260,596)
sequence
gaattccagatgacgcatgcgagattaaaaaaaaaatagccctgtgcctt
atcgtcttattcagcatgtctatgtgttgtgggttcagctatgatcactg
ataaagtcctaaagtcatttctgctgggttacaagggagttcatgtctgt
atagttccctgtcaccaacagaaagagggaaatgtagtttcaatgacagt
catgtgcctttggcctccttgtgcaactgccctgaaattcgagtctagta
gtgtctctgtcctggcttgggatcagataaaagaacagagactcacagtg
aattcatcatttctcctggctgcctgtctcctaccacagagcacttaact
ttgcttcagctttccggcctgtgaccctgctaaagcaactgcctgtgact
ctttaataaactcatttgtaaacatattattattattatttttattatct
ctcatgtgtgtatctgtggcctgtgtgtccaggtgacctcagaggtcagg
agttggatcccttggactagagttacacaggttttttatgaggtgcctga
cgtagattatgggaaccaaactcttggaggagcgcaggtgctgttaacca
ccaagccgtctggccagcctcttgtaacaagctcttaagatttgtatgca
acaagctcatatatggctctcttcagcccatccgttcagggctgtctgtt
ggtggctgtggcgtgaacagctaatatagtagaagacgcacgcccactgt
tggttcaccagcctttgaacttctgtgcccagttacttcttcctcatagg
cacttagaaagaattctaggagcagcagaaggaacttcaagaaacagaaa
gcaaagggggaccagcaccgagtgagcagttgctagggcctgttcacccg
tgctgagcttttagtatctgagagtatatgtctacacagaattccagggt
aatacaatatgtagtttggccaagaggcaattactttaattgtgacttga
gtaatacttactgcctttagaaaggcacccttagcctgttctcccatccc
gactgctgtagctgagtacccctacccaacagcaaatcaaaaaacgctgt
gcaacacggccccacagctgggaaacaaacagctgggagatgtttctgtt
ccggaactttaaattacgattgtgtaaattactcagctgtgtgtctatga
agt
gaattcatcagtgtatggggttgggaccaagggcttcaatgggtactgag
ctacatcctagtctattgttctattttgaatttcagaaggtgccatagat
gtaatctgtaactatggtcttctggctatatcaagagcatacagggaagg
ccaggaaggccttcccggaggaaagagaatggtacaattagggcttacag
aatgataagtacgtctgcttgacttgttatatagccacaataccggttct
acagccacttgggacacacagagatattgctattctaagaatgtaccaca
ggaaacaaacaaaaggagttttatttaatcctaaagaccgtagagggacc
cttacagctccttatagaaatcgcagcacagaatgttaaggaaacaaaag
gttgtctcccactatgagagagagagagagagagagagagagagagagaa
cttaaaatccagaaggagagatgggagtgtctaggccatccttattcctc
tggctgcctcctatttttaaaacagccagcattggagtctgggaaggtat
ggcttagcagttaagatcacttgctgttcttccaaatcacctgaattcag
ttcccagcacccacagtgggcagctcacatctgcctaagtctagaggatc
tgttgccatcttctagcctctttggttgtctgaacacacatgggatgtat
gtatatacacagccacacacacacatacatccatggaacttcctgtctct
actcctgttcacttccttgggcagatatttcactcatcagggtctctttg
ctactggtaacgaccacaggcccttctgtcttcttttaatacttgtacct
ctgtggacttcccagagcctaggatgtcccacgggattcagaagtgtcac
ctaagctgaactgactcccgggtaagccacaaacaggcgtgtcacatgtt
gtcctggcctcaatttaatttctttcttccttgttgttggctaggtggag
ctgaagtaagtattaattttccttcttgttcagtgaccatgacacttacc
tccctactcctatggggttagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65117178_65118395
seq2: B6Ng01-260P03.b_45_1247

seq1  GAATTCCAGATGACGCATGCGAGATTAAAAAAAAAATAGCCCTGTGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATGACGCATGCGAGATTAAAAAAAAAATAGCCCTGTGCCTT  50

seq1  ATCGTCTTATTCAGCATGTCTATGTGTTGTGGGTTCAGCTATGATCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCTTATTCAGCATGTCTATGTGTTGTGGGTTCAGCTATGATCACTG  100

seq1  ATAAAGTCCTAAAGTCATTTCTGCTGGGTTACAAGGGAGTTCATGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCCTAAAGTCATTTCTGCTGGGTTACAAGGGAGTTCATGTCTGT  150

seq1  ATAGTTCCCTGTCACCAACAGAAAGAGGGAAATGTAGTTTCAATGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCCCTGTCACCAACAGAAAGAGGGAAATGTAGTTTCAATGACAGT  200

seq1  CATGTGCCTTTGGCCTCCTTGTGCAACTGCCCTGAAATTCGAGTCTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTTTGGCCTCCTTGTGCAACTGCCCTGAAATTCGAGTCTAGTA  250

seq1  GTGTCTCTGTCCTGGCTTGGGATCAGATAAAAGAACAGAGACTCACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTGTCCTGGCTTGGGATCAGATAAAAGAACAGAGACTCACAGTG  300

seq1  AATTCATCATTTCTCCTGGCTGCCTGTCTCCTACCACAGAGCACTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCATTTCTCCTGGCTGCCTGTCTCCTACCACAGAGCACTTAACT  350

seq1  TTGCTTCAGCTTTCCGGCCTGTGACCCTGCTAAAGCAACTGCCTGTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGCTTTCCGGCCTGTGACCCTGCTAAAGCAACTGCCTGTGACT  400

seq1  CTTTAATAAACTCATTTGTAAACATATTATTATTATTATTTTTATTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAAACTCATTTGTAAACATATTATTATTATTATTTTTATTATCT  450

seq1  CTCATGTGTGTATCTGTGGCCTGTGTGTCCAGGTGACCTCAGAGGTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGTGTATCTGTGGCCTGTGTGTCCAGGTGACCTCAGAGGTCAGG  500

seq1  AGTTGGATCCCTTGGACTAGAGTTACACAGGTTTTTTATGAGGTGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATCCCTTGGACTAGAGTTACACAGGTTTTTTATGAGGTGCCTGA  550

seq1  CGTAGATTATGGGAACCAAACTCTTGGAGGAGCGCAGGTGCTGTTAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGATTATGGGAACCAAACTCTTGGAGGAGCGCAGGTGCTGTTAACCA  600

seq1  CCAAGCCGTCTGGCCAGCCTCTTGTAACAAGCTCTTAAGATTTGTATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCGTCTGGCCAGCCTCTTGTAACAAGCTCTTAAGATTTGTATGCA  650

seq1  ACAAGCTCATATATGGCTCTCTTCAGCCCATCCGTTCAGGGCTGTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTCATATATGGCTCTCTTCAGCCCATCCGTTCAGGGCTGTCTGTT  700

seq1  GGTGGCTGTGGCGTGAACAGCTAATATAGTAGAAGACGCACGCCCACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTGTGGCGTGAACAGCTAATATAGTAGAAGACGCACGCCCACTGT  750

seq1  TGGTTCACCAGCCTTTGAACTTCTGTGCCCAGTTACTTCTTCCTCATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACCAGCCTTTGAACTTCTGTGCCCAGTTACTTCTTCCTCATAGG  800

seq1  CACTTAGAAAGAATTCTAGGAGCAGCAGAAGGAACTTCAAGAAACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAAAGAATTCTAGGAGCAGCAGAAGGAACTTCAAGAAACAGAAA  850

seq1  GCAAAGGGGGACCAGCACCGAGTGAGCAGTTGCTAGGGCCTGTTCACCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGGGACCAGCACCGAGTGAGCAGTTGCTAGGGCCTGTTCACCCG  900

seq1  TGCTGAGCTTTTAGTATCTGAGAGTATATGTCTACACAGAATTCCAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCTTTTAGTATCTGAGAGTATATGTCTACACAGAATTCCAGGGT  950

seq1  AATACAATATGTAGTTTGGCCAAGAGGCAATTACTTTAATTGTGACTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATATGTAGTTTGGCCAAGAGGCAATTACTTTAATTGTGACTTGA  1000

seq1  GTAATACTTACTGCCTTTTAGAAAGGCACCCTTAGCCTGTTCTCCCCATC  1050
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  GTAATACTTACTGCC-TTTAGAAAGGCACCCTTAGCCTGTTCT-CCCATC  1048

seq1  CCGACTGCTGTAGGCTGAGTAACCCCTAACCCAAACAAGCAAAATCAAAA  1100
      |||||||||||| ||||||| |||||| ||||||   ||| |||||||||
seq2  CCGACTGCTGTA-GCTGAGT-ACCCCT-ACCCAA--CAGC-AAATCAAAA  1092

seq1  AACGCTGTGCCAACACGGCCCCACAAGCTGGAAAACCAAACAGCCTGGAG  1150
      ||||||||| |||||||||||||| |||||| ||| ||||||||  ||||
seq2  AACGCTGTG-CAACACGGCCCCAC-AGCTGGGAAA-CAAACAGCTGGGAG  1139

seq1  ATGTTTTCTG-TCCAGAATTTTTAAAATTATGATTGTGTAAAATTACCTT  1199
      ||| |||||| ||| ||| |||  |||||| |||||||| |||||||  |
seq2  ATG-TTTCTGTTCCGGAACTTT--AAATTACGATTGTGT-AAATTAC--T  1183

seq1  CAAGCTGTGTG--CATGAAGT  1218
      | |||||||||   |||||||
seq2  C-AGCTGTGTGTCTATGAAGT  1203

seq1: chr18_65259532_65260596
seq2: B6Ng01-260P03.g_71_1144 (reverse)

seq1  CTTCTAAACCCCTATGAGTAGAGA-GTAAGTGTTCATTGTCACTGA--CA  47
      ||||||| ||| || |||||| || ||||||| |||| ||||||||   |
seq2  CTTCTAACCCCATAGGAGTAGGGAGGTAAGTG-TCATGGTCACTGAACAA  49

seq1  GAAGG-AAATTAATACTTACTTCAGCCTCCACCTAGCCCAACAACAAGGA  96
      ||||| ||||||||||||||||||| |||||||||| |||||||||||||
seq2  GAAGGAAAATTAATACTTACTTCAG-CTCCACCTAG-CCAACAACAAGGA  97

seq1  AGAAAGAA--TAAATTGAGGCCAGGACAACATGTGACACGCCTG-TTGTG  143
      ||||||||  |||||||||||||||||||||||||||||||||| |||||
seq2  AGAAAGAAATTAAATTGAGGCCAGGACAACATGTGACACGCCTGTTTGTG  147

seq1  GCT--ACCGGGAGTCAGTTCAGC-TAGGTGACACTTCTGAAT-CCGTTGG  189
      |||   ||||||||||||||||| |||||||||||||||||| |||| ||
seq2  GCTTACCCGGGAGTCAGTTCAGCTTAGGTGACACTTCTGAATCCCGTGGG  197

seq1  ACATCCTAGGCTCTGGGAAGTCCACAGAGGTACAAGTATT-AAAGAAGAC  238
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATCCTAGGCTCTGGGAAGTCCACAGAGGTACAAGTATTAAAAGAAGAC  247

seq1  AGAAGGGCCTGTGGTCGTTACCAGTAGCAAAGAGACCCTGATGAGTGAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGCCTGTGGTCGTTACCAGTAGCAAAGAGACCCTGATGAGTGAAA  297

seq1  TATCTGCCCAAGGAAGTGAACAGGAGTAGAGACAGGAAGTTCCATGGATG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCCAAGGAAGTGAACAGGAGTAGAGACAGGAAGTTCCATGGATG  347

seq1  TATGTGTGTGTGTGGCTGTGTATATACATACATCCCATGTGTGTTCAGAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGGCTGTGTATATACATACATCCCATGTGTGTTCAGAC  397

seq1  AACCAAAGAGGCTAGAAGATGGCAACAGATCCTCTAGACTTAGGCAGATG  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGAGGCTAGAAGATGGCAACAGATCCTCTAGACTTAGGCAGATG  447

seq1  TGAGCTGCCCACTGTGGGTGCTGGGAACTGAATTCAGGTGATTTGGAAGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCCCACTGTGGGTGCTGGGAACTGAATTCAGGTGATTTGGAAGA  497

seq1  ACAGCAAGTGATCTTAACTGCTAAGCCATACCTTCCCAGACTCCAATGCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGTGATCTTAACTGCTAAGCCATACCTTCCCAGACTCCAATGCT  547

seq1  GGCTGTTTTAAAAATAGGAGGCAGCCAGAGGAATAAGGATGGCCTAGACA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTAAAAATAGGAGGCAGCCAGAGGAATAAGGATGGCCTAGACA  597

seq1  CTCCCATCTCTCCTTCTGGATTTTAAGTTCTCTCTCTCTCTCTCTCTCTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCTCTCCTTCTGGATTTTAAGTTCTCTCTCTCTCTCTCTCTCTC  647

seq1  TCTCTCTCTCTCATAGTGGGAGACAACCTTTTGTTTCCTTAACATTCTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCATAGTGGGAGACAACCTTTTGTTTCCTTAACATTCTGT  697

seq1  GCTGCGATTTCTATAAGGAGCTGTAAGGGTCCCTCTACGGTCTTTAGGAT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGATTTCTATAAGGAGCTGTAAGGGTCCCTCTACGGTCTTTAGGAT  747

seq1  TAAATAAAACTCCTTTTGTTTGTTTCCTGTGGTACATTCTTAGAATAGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAACTCCTTTTGTTTGTTTCCTGTGGTACATTCTTAGAATAGCA  797

seq1  ATATCTCTGTGTGTCCCAAGTGGCTGTAGAACCGGTATTGTGGCTATATA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTGTGTGTCCCAAGTGGCTGTAGAACCGGTATTGTGGCTATATA  847

seq1  ACAAGTCAAGCAGACGTACTTATCATTCTGTAAGCCCTAATTGTACCATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAAGCAGACGTACTTATCATTCTGTAAGCCCTAATTGTACCATT  897

seq1  CTCTTTCCTCCGGGAAGGCCTTCCTGGCCTTCCCTGTATGCTCTTGATAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTCCGGGAAGGCCTTCCTGGCCTTCCCTGTATGCTCTTGATAT  947

seq1  AGCCAGAAGACCATAGTTACAGATTACATCTATGGCACCTTCTGAAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGACCATAGTTACAGATTACATCTATGGCACCTTCTGAAATTC  997

seq1  AAAATAGAACAATAGACTAGGATGTAGCTCAGTACCCATTGAAGCCCTTG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAACAATAGACTAGGATGTAGCTCAGTACCCATTGAAGCCCTTG  1047

seq1  GTCCCAACCCCATACACTGATGAATTC  1065
      |||||||||||||||||||||||||||
seq2  GTCCCAACCCCATACACTGATGAATTC  1074