BAC Information

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BAC

Clone NameB6Ng01-261B17
Chromosome18 (Build37)
Map Location 61,029,571 - 61,198,160
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream genePdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261B17.bB6Ng01-261B17.g
ACCGA065859GA065860
length7431,139
definitionB6Ng01-261B17.b B6Ng01-261B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,029,571 - 61,030,312)(61,197,032 - 61,198,160)
sequence
gaattccgggacagccagggctacatagtgagatcctgtctcaaagaaaa
agaaaaaaagaaaaagccaagaggtcactggggacactggggacacttga
tgggagaagaaatgaggtaggcgtgtaaaaatagggagtggtcgtgacga
gtctgtctttgatctccctgatgtcgagggtctcttgctgagacgtctcc
cagggctgaccttctcgatttccctcgaaggaaggcatatcttgctatat
agcccatctgccccaaaatattctgagcaggaaggagcgggatctgtttt
gtcaacgcagcttgcaataaagagtctcattcagggaagccaaacagctg
cttgactattaataggcaggggcctgagctgaagcctgctggaggggggg
ggggctcatgcagttctgcaaaggtgaccctcagttctgcctgtctgagt
cttactcccccatggtgggaccattgcctggttcttatatctcaggtctg
tagtcacctcaggtttctgatagagcggcgacatgaccttgctctgctgc
agcgacactttctccctgacgctgaactgtggggaatcagctcctccatc
ctggccagagatgcaagcattcctagactggatgggatgtctggatgggg
ttaccacaactgtgctgactgacagtctagaaatggaatgactgagcatg
gtggtacatgccattaattccagcactcaaggaggcagaagca
gaattctctagcttggctcccaactagatccaagatgtgatattcccttc
actgaacatttaattcacgccttgccccccaggactgaaggcaccttaag
ttagaaggggcttcattccatattgaacatggcgccagcacggttgtgtg
ggtcagtctgtccgtgtcaaagggatgaatatgtgagcaaataaatttct
aatcccaaatggcaagcctcttgactaggcaagaactggcatagagagga
ttagaggccaccaatttcctgctttccccagaaaaagtgtgacccctcac
tggagatacccagccatcccttgcacacctcccttgacgataaactcact
cactacaggaccatccgtctgctttgtactggatggtcctacagtgagca
ttcattctagacaggtaggttagactccatgcctgcagctctctctctca
ggtccctgccctccatgctaggccttcacttcccacagtgaggagcaggc
ctggttaccccaggtgagagcagaattctgccctcttggggtatctcttg
gttgtgctctcactggaacccagaactctaggtgtcttctgacctgagaa
tgtggcgcccctcccccatgctgtgacacccatgtgctcataccgtcatc
tgtgttggcgacaagtagctaccttcccctctcttgtaagcagccatcat
tataaagcatgaactggagttctgccctttcctctctgggcctccctgct
tccatccattgagcaggaaggggaccattaggcttactgctatgtgtaag
tgtcactgattgaggacaccttcacgggcaggtcatctgtgcactcgcac
agggctcagctgaatcctgccactatgaaattctaggtcattttggaaca
acctggcatttgcattttgcactgcatctgccggcagggtacagcatggc
ctcgactccccctgcttgcccctgtaaagaagaagggaaagtcttaatag
ccagaacctgtgtccttgcctttgaggcatcggaaagtctgcatgtccta
gaagcaccagaagatccaatcttcggagacctccctctgcaacacttccc
tccccttgccatatgatctccctcatgaatccgtcctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61029571_61030312
seq2: B6Ng01-261B17.b_49_791

seq1  GAATTCCGGGACAGCCAGGGCTACATAGTGAGATCCTGTCTCAAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGACAGCCAGGGCTACATAGTGAGATCCTGTCTCAAAGAAAA  50

seq1  AGAAAAAAAGAAAAAGCCAAGAGGTCACTGGGGACACTGGGGACACTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGAAAAAGCCAAGAGGTCACTGGGGACACTGGGGACACTTGA  100

seq1  TGGGAGAAGAAATGAGGTAGGCGTGTAAAAATAGGGAGTGGTCGTGACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAGAAATGAGGTAGGCGTGTAAAAATAGGGAGTGGTCGTGACGA  150

seq1  GTCTGTCTTTGATCTCCCTGATGTCGAGGGTCTCTTGCTGAGACGTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTTTGATCTCCCTGATGTCGAGGGTCTCTTGCTGAGACGTCTCC  200

seq1  CAGGGCTGACCTTCTCGATTTCCCTCGAAGGAAGGCATATCTTGCTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGACCTTCTCGATTTCCCTCGAAGGAAGGCATATCTTGCTATAT  250

seq1  AGCCCATCTGCCCCAAAATATTCTGAGCAGGAAGGAGCGGGATCTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCTGCCCCAAAATATTCTGAGCAGGAAGGAGCGGGATCTGTTTT  300

seq1  GTCAACGCAGCTTGCAATAAAGAGTCTCATTCAGGGAAGCCAAACAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGCAGCTTGCAATAAAGAGTCTCATTCAGGGAAGCCAAACAGCTG  350

seq1  CTTGACTATTAATAGGCAGGGGCCTGAGCTGAAGCCTGCTGGAGGGGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTATTAATAGGCAGGGGCCTGAGCTGAAGCCTGCTGGAGGGGGGG  400

seq1  GGGGCTCATGCAGTTCTGCAAAGGTGACCCTCAGTTCTGCCTGTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCATGCAGTTCTGCAAAGGTGACCCTCAGTTCTGCCTGTCTGAGT  450

seq1  CTTACTCCCCCATGGTGGGACCATTGCCTGGTTCTTATATCTCAGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCCCCCATGGTGGGACCATTGCCTGGTTCTTATATCTCAGGTCTG  500

seq1  TAGTCACCTCAGGTTTCTGATAGAGCGGCGACATGACCTTGCTCTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCTCAGGTTTCTGATAGAGCGGCGACATGACCTTGCTCTGCTGC  550

seq1  AGCGACACTTTCTCCCTGACGCTGAACTGTGGGGAATCAGCTCCTCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGACACTTTCTCCCTGACGCTGAACTGTGGGGAATCAGCTCCTCCATC  600

seq1  CTGGCCAGAGATGCAAGCATTCCTAGACTGGATGGGATGTCTGGATGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAGAGATGCAAGCATTCCTAGACTGGATGGGATGTCTGGATGGGG  650

seq1  TTACCACAACTGTGCTGACTGACAGTCTAGAAATGGAATGACTGAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAACTGTGCTGACTGACAGTCTAGAAATGGAATGACTGAGCATG  700

seq1  GTGGTACATGCCATTAATTCCAGCACTC-AGGAGGCAGAAGCA  742
      |||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGTACATGCCATTAATTCCAGCACTCAAGGAGGCAGAAGCA  743

seq1: chr18_61197032_61198160
seq2: B6Ng01-261B17.g_66_1204 (reverse)

seq1  TGAGGACGGATTCAGGAAGGA-AGACTATGGGCCAGGGAGGGAAGTG-TG  48
      |||||||||||||| || ||| |   |||||    |||||||||||| ||
seq2  TGAGGACGGATTCATGAGGGAGATCATATGGCAAGGGGAGGGAAGTGTTG  50

seq1  CAGA-GGAGTCCTCTG-AGATTGGATC-TCTGGTGC-TCTAGGGCCATGC  94
      |||| ||||  ||| | |||||||||| |||||||| |||| || |||||
seq2  CAGAGGGAGGTCTCCGAAGATTGGATCTTCTGGTGCTTCTA-GGACATGC  99

seq1  AGAATTTCCGATGCCTCAAA-GCAAGGACACAGGTCTTGGCTATT-AGAC  142
      ||| |||||||||||||||| ||||||||||||||  |||||||| ||||
seq2  AGACTTTCCGATGCCTCAAAGGCAAGGACACAGGTTCTGGCTATTAAGAC  149

seq1  TTT-CCTTC-TCTTTACAGGGGCAAGCA-GGGGAGTCGAGGCCATGCTGT  189
      ||| ||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TTTCCCTTCTTCTTTACAGGGGCAAGCAGGGGGAGTCGAGGCCATGCTGT  199

seq1  ACCCTGCCGGCAGATGCAGTGCAAAATGCAAATGCCAGGTTGTTCCAAAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCGGCAGATGCAGTGCAAAATGCAAATGCCAGGTTGTTCCAAAA  249

seq1  TGACCTAGAATTTCATAGTGGCAGGATTCAGCTGAGCCCTGTGCGAGTGC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGAATTTCATAGTGGCAGGATTCAGCTGAGCCCTGTGCGAGTGC  299

seq1  ACAGATGACCTGCCCGTGAAGGTGTCCTCAATCAGTGACACTTACACATA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGACCTGCCCGTGAAGGTGTCCTCAATCAGTGACACTTACACATA  349

seq1  GCAGTAAGCCTAATGGTCCCCTTCCTGCTCAATGGATGGAAGCAGGGAGG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGCCTAATGGTCCCCTTCCTGCTCAATGGATGGAAGCAGGGAGG  399

seq1  CCCAGAGAGGAAAGGGCAGAACTCCAGTTCATGCTTTATAATGATGGCTG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGAGGAAAGGGCAGAACTCCAGTTCATGCTTTATAATGATGGCTG  449

seq1  CTTACAAGAGAGGGGAAGGTAGCTACTTGTCGCCAACACAGATGACGGTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGAGAGGGGAAGGTAGCTACTTGTCGCCAACACAGATGACGGTA  499

seq1  TGAGCACATGGGTGTCACAGCATGGGGGAGGGGCGCCACATTCTCAGGTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACATGGGTGTCACAGCATGGGGGAGGGGCGCCACATTCTCAGGTC  549

seq1  AGAAGACACCTAGAGTTCTGGGTTCCAGTGAGAGCACAACCAAGAGATAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACCTAGAGTTCTGGGTTCCAGTGAGAGCACAACCAAGAGATAC  599

seq1  CCCAAGAGGGCAGAATTCTGCTCTCACCTGGGGTAACCAGGCCTGCTCCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGGGCAGAATTCTGCTCTCACCTGGGGTAACCAGGCCTGCTCCT  649

seq1  CACTGTGGGAAGTGAAGGCCTAGCATGGAGGGCAGGGACCTGAGAGAGAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGGAAGTGAAGGCCTAGCATGGAGGGCAGGGACCTGAGAGAGAG  699

seq1  AGCTGCAGGCATGGAGTCTAACCTACCTGTCTAGAATGAATGCTCACTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGGCATGGAGTCTAACCTACCTGTCTAGAATGAATGCTCACTGT  749

seq1  AGGACCATCCAGTACAAAGCAGACGGATGGTCCTGTAGTGAGTGAGTTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATCCAGTACAAAGCAGACGGATGGTCCTGTAGTGAGTGAGTTTA  799

seq1  TCGTCAAGGGAGGTGTGCAAGGGATGGCTGGGTATCTCCAGTGAGGGGTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAAGGGAGGTGTGCAAGGGATGGCTGGGTATCTCCAGTGAGGGGTC  849

seq1  ACACTTTTTCTGGGGAAAGCAGGAAATTGGTGGCCTCTAATCCTCTCTAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTTCTGGGGAAAGCAGGAAATTGGTGGCCTCTAATCCTCTCTAT  899

seq1  GCCAGTTCTTGCCTAGTCAAGAGGCTTGCCATTTGGGATTAGAAATTTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCTTGCCTAGTCAAGAGGCTTGCCATTTGGGATTAGAAATTTAT  949

seq1  TTGCTCACATATTCATCCCTTTGACACGGACAGACTGACCCACACAACCG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCACATATTCATCCCTTTGACACGGACAGACTGACCCACACAACCG  999

seq1  TGCTGGCGCCATGTTCAATATGGAATGAAGCCCCTTCTAACTTAAGGTGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCGCCATGTTCAATATGGAATGAAGCCCCTTCTAACTTAAGGTGC  1049

seq1  CTTCAGTCCTGGGGGGCAAGGCGTGAATTAAATGTTCAGTGAAGGGAATA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCCTGGGGGGCAAGGCGTGAATTAAATGTTCAGTGAAGGGAATA  1099

seq1  TCACATCTTGGATCTAGTTGGGAGCCAAGCTAGAGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTGGATCTAGTTGGGAGCCAAGCTAGAGAATTC  1139