BAC Information

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BAC

Clone NameB6Ng01-261E14
Chromosome18 (Build37)
Map Location 20,844,606 - 21,024,683
singlet/doubletdoublet
Overlap geneB4galt6, D030074E01Rik
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823
Downstream geneRnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261E14.bB6Ng01-261E14.g
ACCGA065994GA065995
length1,088962
definitionB6Ng01-261E14.b B6Ng01-261E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,023,605 - 21,024,683)(20,844,606 - 20,845,562)
sequence
gaattcatccacttcaaatagaccaatgcggtgaccctcctaacaatact
gacggctcagagtcaaagtctgcttcttcagttcacgagacaaagaaagc
aagtactgcagtgattcgtggtgcttgcttaacactcactgaccatgata
gaatccgacagtttatacaagagtttacattccgtggccttttgccacac
atagagaaaacaattcgtcagttaaatgatcaggtaagacgtaagttttt
tttaggttattaatcttcaaattaagtcaatgagtttaagactattaaaa
gtttgatttgtatttaaagttttgttttgatttttgttctttgataaact
atgaaaactgactgaaattaatatcagtgatgaagttctcctgagcccta
cctagatacaccaagttattttaatttgggatttctttagtttattggac
aggttatttttttaagatttatttatcaaatttcattttatgtgtataaa
tgttttgtctgaatgtacgtatgtgtaccgttttcatacttggtgaccac
agaagacagaagaggtcattggagtcctagaactggagtaacatatagtt
cttagccaccatgtgagtgcaggcaactgaacttttagtcctttgtaaaa
gcagcaagtgctcttaaccagcgagccatctctacagccaatatttatat
tgggtactaaacaaaacaaaactgcttccagttttgtttaatatgtacca
gtgttttgcctacatatatgtatatcgcatgtgtgcctagtccctctccc
ccagaactggagagacagttgattgtgagcagctatgtggatgctgagca
ctgaacccagattcttctctgcaagaacaacaagtactatgagcaactga
gccatttctgcagtccctaatatttttagaattagttttaataaaatatt
tgtttactctaataaagcttaaaattgttttggtttgtagaaaataattt
taagcctttatattttgtcaacatgttaatttttcttttcttagcttata
tcaaggaaaggtttgagtcgatctctgttttcttgcac
gaattccaggtctgaattagaaaaggtggttctcacaagctgacattcca
gatgcaacacgaagatatagcaaaattacttacatccaattccggaagcc
atattaatactagacttaacctaagaaagtaaggcagatgaccagttctg
aattttcctaaaactgtgaactaagtatcaatgcaaaaggcaccccactg
tggacagcccgccacattatgaagtgtgtgtcctccaataaaattccaca
tggcacagcttcccacagcactgtaaggaggggccaaagagccctgtctc
acccgccttaacattaacattacattctgctgtcattcggtcaaattaaa
cacttcattagccacaggagacagaacataaactgagaacatacaaaaat
cttcatctccagaagttgagatttttttttcactcttttttgagtagcta
aaaaggttgggaggtaaatattttagaagcaattctaagaataaacacgg
agagattgctgtcacaacagggcatctgtcttctccggtgcaagaatttt
agttatcactgtagggtttgacttgtggtcatcagcattaccaaaactat
gacagacaatgacaactgaaagctaagctctcaacattagacaaggggag
caaactttctcacatccagaattctcactcttagggtttacttgacagac
gatgttgttctaaatttgtttaaagatgggagataagatcttacatgtga
atataggctatttttcaagaatttttataatcaatcatttttcaaagtaa
gaacactatttgggcttttgttgttgtctggtcattgaaaacctcacccg
tgtgtggagggtgagcagaagtcacaattatccacacagtcaatttaatg
actgtaaggtaagtctataggcccctcggctcactgcccagcaccatggg
tggtggtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_21023605_21024683
seq2: B6Ng01-261E14.b_50_1132 (reverse)

seq1  AGAAAACAGAGATCGACTCAAACCTTTCCTTGATATTAGCTA--GAAAGA  48
      |||||||||||||||||||||||||||||||||||| |||||   |||||
seq2  AGAAAACAGAGATCGACTCAAACCTTTCCTTGATATAAGCTAAGAAAAGA  50

seq1  AAAATTAACATGTTGAC-AAATATAAAGGCTTAAAATTATTTTCTACAAA  97
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAATTAACATGTTGACAAAATATAAAGGCTTAAAATTATTTTCTACAAA  100

seq1  CC-AAACAATTTTAAGCTTTA-TAGAGTAAACAAATATTTTATTAAAACT  145
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAAAACAATTTTAAGCTTTATTAGAGTAAACAAATATTTTATTAAAACT  150

seq1  AATTCTAAAAATATTTAGGGACTGCAGAAATGGCTCAGTTGCTCATAGTA  195
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAAAATA-TTAGGGACTGCAGAAATGGCTCAGTTGCTCATAGTA  199

seq1  CTTGTTGTTCTTGCAGAGAAGAATCTGGGTTCAGTGCTCAGCATCCACAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTTCTTGCAGAGAAGAATCTGGGTTCAGTGCTCAGCATCCACAT  249

seq1  AGCTGCTCACAATCAACTGTCTCTCCAGTTCTGGGGGAGAGGGACTAGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCACAATCAACTGTCTCTCCAGTTCTGGGGGAGAGGGACTAGGC  299

seq1  ACACATGCGATATACATATATGTAGGCAAAACACTGGTACATATTAAACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCGATATACATATATGTAGGCAAAACACTGGTACATATTAAACA  349

seq1  AAACTGGAAGCAGTTTTGTTTTGTTTAGTACCCAATATAAATATTGGCTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAGCAGTTTTGTTTTGTTTAGTACCCAATATAAATATTGGCTG  399

seq1  TAGAGATGGCTCGCTGGTTAAGAGCACTTGCTGCTTTTACAAAGGACTAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGGCTCGCTGGTTAAGAGCACTTGCTGCTTTTACAAAGGACTAA  449

seq1  AAGTTCAGTTGCCTGCACTCACATGGTGGCTAAGAACTATATGTTACTCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGTTGCCTGCACTCACATGGTGGCTAAGAACTATATGTTACTCC  499

seq1  AGTTCTAGGACTCCAATGACCTCTTCTGTCTTCTGTGGTCACCAAGTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAGGACTCCAATGACCTCTTCTGTCTTCTGTGGTCACCAAGTATG  549

seq1  AAAACGGTACACATACGTACATTCAGACAAAACATTTATACACATAAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGGTACACATACGTACATTCAGACAAAACATTTATACACATAAAAT  599

seq1  GAAATTTGATAAATAAATCTTAAAAAAATAACCTGTCCAATAAACTAAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGATAAATAAATCTTAAAAAAATAACCTGTCCAATAAACTAAAG  649

seq1  AAATCCCAAATTAAAATAACTTGGTGTATCTAGGTAGGGCTCAGGAGAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAAATTAAAATAACTTGGTGTATCTAGGTAGGGCTCAGGAGAAC  699

seq1  TTCATCACTGATATTAATTTCAGTCAGTTTTCATAGTTTATCAAAGAACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCACTGATATTAATTTCAGTCAGTTTTCATAGTTTATCAAAGAACA  749

seq1  AAAATCAAAACAAAACTTTAAATACAAATCAAACTTTTAATAGTCTTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAACAAAACTTTAAATACAAATCAAACTTTTAATAGTCTTAAA  799

seq1  CTCATTGACTTAATTTGAAGATTAATAACCTAAAAAAAACTTACGTCTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGACTTAATTTGAAGATTAATAACCTAAAAAAAACTTACGTCTTA  849

seq1  CCTGATCATTTAACTGACGAATTGTTTTCTCTATGTGTGGCAAAAGGCCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCATTTAACTGACGAATTGTTTTCTCTATGTGTGGCAAAAGGCCA  899

seq1  CGGAATGTAAACTCTTGTATAAACTGTCGGATTCTATCATGGTCAGTGAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATGTAAACTCTTGTATAAACTGTCGGATTCTATCATGGTCAGTGAG  949

seq1  TGTTAAGCAAGCACCACGAATCACTGCAGTACTTGCTTTCTTTGTCTCGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCAAGCACCACGAATCACTGCAGTACTTGCTTTCTTTGTCTCGT  999

seq1  GAACTGAAGAAGCAGACTTTGACTCTGAGCCGTCAGTATTGTTAGGAGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGAAGCAGACTTTGACTCTGAGCCGTCAGTATTGTTAGGAGGG  1049

seq1  TCACCGCATTGGTCTATTTGAAGTGGATGAATTC  1079
      ||||||||||||||||||||||||||||||||||
seq2  TCACCGCATTGGTCTATTTGAAGTGGATGAATTC  1083

seq1: chr18_20844606_20845562
seq2: B6Ng01-261E14.g_66_1027

seq1  GAATTCCAGGTCTGAATTAGAAAAGGTGGTTCTCACAAGCTGACATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCTGAATTAGAAAAGGTGGTTCTCACAAGCTGACATTCCA  50

seq1  GATGCAACACGAAGATATAGCAAAATTACTTACATCCAATTCCGGAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAACACGAAGATATAGCAAAATTACTTACATCCAATTCCGGAAGCC  100

seq1  ATATTAATACTAGACTTAACCTAAGAAAGTAAGGCAGATGACCAGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATACTAGACTTAACCTAAGAAAGTAAGGCAGATGACCAGTTCTG  150

seq1  AATTTTCCTAAAACTGTGAACTAAGTATCAATGCAAAAGGCACCCCACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTAAAACTGTGAACTAAGTATCAATGCAAAAGGCACCCCACTG  200

seq1  TGGACAGCCCGCCACATTATGAAGTGTGTGTCCTCCAATAAAATTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGCCCGCCACATTATGAAGTGTGTGTCCTCCAATAAAATTCCACA  250

seq1  TGGCACAGCTTCCCACAGCACTGTAAGGAGGGGCCAAAGAGCCCTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGCTTCCCACAGCACTGTAAGGAGGGGCCAAAGAGCCCTGTCTC  300

seq1  ACCCGCCTTAACATTAACATTACATTCTGCTGTCATTCGGTCAAATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGCCTTAACATTAACATTACATTCTGCTGTCATTCGGTCAAATTAAA  350

seq1  CACTTCATTAGCCACAGGAGACAGAACATAAACTGAGAACATACAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATTAGCCACAGGAGACAGAACATAAACTGAGAACATACAAAAAT  400

seq1  CTTCATCTCCAGAAGTTGAGATTTTTTTTTCACTCTTTTTTGAGTAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTCCAGAAGTTGAGATTTTTTTTTCACTCTTTTTTGAGTAGCTA  450

seq1  AAAAGGTTGGGAGGTAAATATTTTAGAAGCAATTCTAAGAATAAACACGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTGGGAGGTAAATATTTTAGAAGCAATTCTAAGAATAAACACGG  500

seq1  AGAGATTGCTGTCACAACAGGGCATCTGTCTTCTCCGGTGCAAGAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGCTGTCACAACAGGGCATCTGTCTTCTCCGGTGCAAGAATTTT  550

seq1  AGTTATCACTGTAGGGTTTGACTTGTGGTCATCAGCATTACCAAAACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCACTGTAGGGTTTGACTTGTGGTCATCAGCATTACCAAAACTAT  600

seq1  GACAGACAATGACAACTGAAAGCTAAGCTCTCAACATTAGACAAGGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAATGACAACTGAAAGCTAAGCTCTCAACATTAGACAAGGGGAG  650

seq1  CAAACTTTCTCACATCCAGAATTCTCACTCTTAGGGTTTACTTGACAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCTCACATCCAGAATTCTCACTCTTAGGGTTTACTTGACAGAC  700

seq1  GATGTTGTTCTAAATTTGTTTAAAGATGGGAGATAAGATCTTACATGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTTCTAAATTTGTTTAAAGATGGGAGATAAGATCTTACATGTGA  750

seq1  ATATAGGCTATTTTTCAAGAATTTTTATAATCAATCA-TTTTCAAAGTAA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATATAGGCTATTTTTCAAGAATTTTTATAATCAATCATTTTTCAAAGTAA  800

seq1  GAACACTATTTGGGC-TTTGTTGTTGTCTGGTCATTGAAAACCTCACCCG  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAACACTATTTGGGCTTTTGTTGTTGTCTGGTCATTGAAAACCTCACCCG  850

seq1  TGTGTGGAGGGTGAGCAGAAGTCACAA-TATCCACACAGTCAA-TTAATG  896
      ||||||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  TGTGTGGAGGGTGAGCAGAAGTCACAATTATCCACACAGTCAATTTAATG  900

seq1  ACTGTAAGGTAAGTCTATAGG-CCCTCGGCTCACTGCCCAGCACCAT-GG  944
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  ACTGTAAGGTAAGTCTATAGGCCCCTCGGCTCACTGCCCAGCACCATGGG  950

seq1  TGGTGGTGGTGGG  957
      ||||||| |||||
seq2  TGGTGGT-GTGGG  962