BAC Information

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BAC

Clone NameB6Ng01-261J02
Chromosome18 (Build37)
Map Location 88,969,205 - 88,970,389
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261J02.bB6Ng01-261J02.g
ACCGA066205GA066206
length1,1781,164
definitionB6Ng01-261J02.b B6Ng01-261J02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaggaatatatacacaatcgcttaaaaacctaattataagg
aattataacccattttataaagtggaatttaaaaatgaacagatatttca
ccagtgtgagatggtagcgaatgtaggtggaataccaaaagcattgatat
tagagaattaataatttaattaattaatttaattatattaaattaaacca
gaatgagacaccaatacagaagtctaagaacgcagagattccaaggactg
gttaggatcagagtaactggaactctctaacattgctgatgttgatacaa
aatgatatatcctcatttcttgtaaagttgaatatacacagcatagcatg
ttccatgggtcttaatttaccccaaagaaaaaacataaatgcatgtgaca
atatacaggcaaaaattcattacaactttgcctatagtaccaaactctag
agaccacttacctagtgctctcttacttacatttcagactcagcttgcta
gatatttgagtttagttgatgaaaagtcctgattaaacataaatactgaa
aataataatcagatgtggtggcacattcctataatctcttcactcaaaga
ctgaggcaggaaaaattaagctcaagctcagcataagttatcaggaagaa
cccacctcaaaacaaacacaaacaattgaaaatgaaaataaataaaattc
aaaagccaatgttaaaaacaatggataaattaacagaaaaaaagcataat
ttcaaaaacgtcagaagtagaacattatcaagtctgtatctaccctcaaa
gtctactttttttttacttttttatttttttatttttttattagatattt
atttcagttacatttccaatgctatcccaaaagtccaccacacgctcccc
cacccacttccccacccacccactcccatttcttagccctggcgttcccc
tgtactgaggcatataaagtttgcacgaccaatgggcctcattccactga
tggcgactaggccatcttttgatacatatgcagctagagacacgagctcc
gggggggtactatagtttatatgttgttccacctataagattgcagatcc
cttagcctcttggtacctttctctagctcctccattgtagctggattcat
cgatataggtactgtaagcatccacttc
gaattcttccaaacataaaaatatcaacagtatctttagctgctattatc
tctacaataactcgccttatattattattagtttctatggctattatttt
aatttagtgactaatagctgtattctggagtcatgaagatatgtcagcat
tccagatatttcccatagtagtggcctgacttttgagaaagtgattgctc
agtctgtatatttttacttttgtgtaatgttttcaggactgacgctttgg
tattgggtaacctattggtgtgtttttcctgggggacactacttctcttg
ccctcagcatattttaattacccgtagttctttgaatatggttgaggcct
tgtgaacttttccccatttactttggcatgtctatcagtgcattcccgtc
cagctcaggttcaagcagtcattggtgagactttatggatgtagcttttg
acattactaggaaacaaaacctcatagcaaactccctgatcctccggctc
tacatatctttccaccccctctcccacaatgattcctgagcctcagattc
tgaagttgtattataaatgcatcagctgggactaggctctacaactttac
attttgattagttgtggttttctataatgatctctgttgcaaaaagaagt
ttctttgatgagcaaggactacacttacctgtgggtataaagacaatgtt
tagactgtagttagggattatgctgttttagtaaagtggtaattgtaggt
tctcctccaagacttgtgacttacactagccctggttagatggctaggtt
tccagtactgggcatgatttccctttctgttggtggatctgaagcctaat
tagagagctgttggttactgacaaagtatgcatgccactactgtaccctt
agggttattttctcatactgtctttgttgtgggcccatagatgtcatatc
tgggtagtactgttggttacttctttctttcgttagtttgaatggtgcct
tctggtgtcatgaaatgtagtcctgaagagagatggttttcagagtttca
gctcaaggtctcaggactgttgtctgaagtcatgatgttttttgtcatgg
gttactacttcaagtctgggccaacctaggccagtggccaataggccctt
ataataaacttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88969205_88970389
seq2: B6Ng01-261J02.b_44_1221

seq1  GAATTCTCAAAGGAATATATACACAATCGCTTAAAAACCTAATTATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAGGAATATATACACAATCGCTTAAAAACCTAATTATAAGG  50

seq1  AATTATAACCCATTTTATAAAGTGGAATTTAAAAATGAACAGATATTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACCCATTTTATAAAGTGGAATTTAAAAATGAACAGATATTTCA  100

seq1  CCAGTGTGAGATGGTAGCGAATGTAGGTGGAATACCAAAAGCATTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGAGATGGTAGCGAATGTAGGTGGAATACCAAAAGCATTGATAT  150

seq1  TAGAGAATTAATAATTTAATTAATTAATTTAATTATATTAAATTAAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTAATAATTTAATTAATTAATTTAATTATATTAAATTAAACCA  200

seq1  GAATGAGACACCAATACAGAAGTCTAAGAACGCAGAGATTCCAAGGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGACACCAATACAGAAGTCTAAGAACGCAGAGATTCCAAGGACTG  250

seq1  GTTAGGATCAGAGTAACTGGAACTCTCTAACATTGCTGATGTTGATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGATCAGAGTAACTGGAACTCTCTAACATTGCTGATGTTGATACAA  300

seq1  AATGATATATCCTCATTTCTTGTAAAGTTGAATATACACAGCATAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATATCCTCATTTCTTGTAAAGTTGAATATACACAGCATAGCATG  350

seq1  TTCCATGGGTCTTAATTTACCCCAAAGAAAAAACATAAATGCATGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGGTCTTAATTTACCCCAAAGAAAAAACATAAATGCATGTGACA  400

seq1  ATATACAGGCAAAAATTCATTACAACTTTGCCTATAGTACCAAACTCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGGCAAAAATTCATTACAACTTTGCCTATAGTACCAAACTCTAG  450

seq1  AGACCACTTACCTAGTGCTCTCTTACTTACATTTCAGACTCAGCTTGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTTACCTAGTGCTCTCTTACTTACATTTCAGACTCAGCTTGCTA  500

seq1  GATATTTGAGTTTAGTTGATGAAAAGTCCTGATTAAACATAAATACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAGTTTAGTTGATGAAAAGTCCTGATTAAACATAAATACTGAA  550

seq1  AATAATAATCAGATGTGGTGGCACATTCCTATAATCTCTTCACTCAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATCAGATGTGGTGGCACATTCCTATAATCTCTTCACTCAAAGA  600

seq1  CTGAGGCAGGAAAAATTAAGCTCAAGCTCAGCATAAGTTATCAGGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGGAAAAATTAAGCTCAAGCTCAGCATAAGTTATCAGGAAGAA  650

seq1  CCCACCTCAAAACAAACACAAACAATTGAAAATGAAAATAAATAAAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAAAACAAACACAAACAATTGAAAATGAAAATAAATAAAATTC  700

seq1  AAAAGCCAATGTTAAAAACAATGGATAAATTAACAGAAAAAAAGCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAATGTTAAAAACAATGGATAAATTAACAGAAAAAAAGCATAAT  750

seq1  TTCAAAAACGTCAGAAGTAGAACATTATCAAGTCTGTATCTACCCTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACGTCAGAAGTAGAACATTATCAAGTCTGTATCTACCCTCAAA  800

seq1  GTCTAC-TTTTTTTTACTTTTTTATTTTTTTATTTTTTTATTAGATATTT  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTTTTTTTTACTTTTTTATTTTTTTATTTTTTTATTAGATATTT  850

seq1  ATTTCAGTTACATTTCCAATGCTATCCCAAAAGTCCACCACACGCTCCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTTACATTTCCAATGCTATCCCAAAAGTCCACCACACGCTCCCC  900

seq1  CACCCACTTCCCCACCCACCCACTCCCATTTCTTAGCCCTGGCGTTCCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTCCCCACCCACCCACTCCCATTTCTTAGCCCTGGCGTTCCCC  950

seq1  TGTACTGAGGCATATAAAGTTTGCACGACCAATGGGCCTCATTCCACTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAGGCATATAAAGTTTGCACGACCAATGGGCCTCATTCCACTGA  1000

seq1  TGGCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACACGAGCTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGACACGAGCTCC  1050

seq1  GGGGGGGTACTGGTTAGTTTATATTGTTGTTCCACCTATAGGGTTGCAGA  1099
      |||||||||||   ||||||||| |||||||||||||||| | |||||||
seq2  GGGGGGGTACT--ATAGTTTATA-TGTTGTTCCACCTATAAGATTGCAGA  1097

seq1  TCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTG  1149
      |||| |||||  |||||   |||||||||||||||||||||  |   |||
seq2  TCCC-TTAGCCTCTTGGTACCTTTCTCTAGCTCCTCCATTGTAG---CTG  1143

seq1  TGATCCATCTA-ATAGGTGACTGTAAGCATCCACTTC  1185
       ||| |||| | |||||| ||||||||||||||||||
seq2  -GATTCATCGATATAGGT-ACTGTAAGCATCCACTTC  1178