BAC Information

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BAC

Clone NameB6Ng01-263E06
Chromosome18 (Build37)
Map Location 28,993,017 - 28,994,217
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263E06.bB6Ng01-263E06.g
ACCGA067478GA067479
length1,2001,226
definitionB6Ng01-263E06.b B6Ng01-263E06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgcaagccccagtttcttagagaccctgcctcttaacaccag
gtacaaggcaggtaggtcagtgaggtacagcacttgctcatcatgtgcac
atctctgggtgggaacccaagaaccatagaaactacaaaagagtgacgaa
gagagttaccatatgtccataatctatgggcatgtatctatcgaatataa
actcgatttgatttcagacttttacaggttgaatccaaatgccttctcac
tgcctttgtcatggaagagggggctgttactagcaactattagcaactat
ttgacacctgaccacacgtgttcaagcatttagttgtgtgtatgtgtgtg
tgtgtgtttgtgtactcatatatgaatgtgaacacctttttgtgtcaata
tatgttgctaaaatgccttccaaaggggagatgttaacaatatctaccca
ttattgtaaggtaacaaaacaaaccaaggcttgattccatcagtgttcat
tccagggaaccaatgagataattgttctttcttatagtttatagttgagg
agctactagcaggtatgtggtgatccttctacagtaggcagtacctataa
agcttttccccatcgttgataaggtgttcccccttagctgaatagataag
tgtgtccttgtctcccttctctgacctatatgtgcaaagtcctccctgag
actatatgcagttaaggtagtgttaaatacaacagatagtagtgaatggt
aaaatactctgatgagggtctggtgactccacattcctccttgagaggtt
atgaacagtaagcaagaaaaaggtgatgtcatagggacttatcgcagcaa
aagacaccatggcccaaggcaactcttaaaaagcaagcatttaattgagg
ctagcttacagatgcttagttcattatcatcatgtgtgggaagatggcaa
gttgtctactgggatgtggggcctggaggagcctacatttttgatcttga
aaggcagcagggagagatgattgttgtctttgcacttgcaaggtggagca
ttatacaaccctaaagcctcatcttcgacatgtgaacacactctctaaac
aggcacaactctagtcgtgcacttcctagggcaagctatatacattaact
gtagtatgggggtcatcctatctacgcaaaggattattcatctgcaattg


gaattcagggaggcacaacaggctacattggagaagaagaaacatggctt
ttggtgaagattttttccattgtgccacaaaaatgagatctactcatttc
tctgcaccctggatgctcacatatcttataagaaatggtgtagtgtatgg
tttgcacataatgtactcacacattactatttatcctgaatcatcttgag
tttacttagaatgcctaatacaatgcactttctatttgtatagctgccat
gctgtgttgttcagggaacaatgacaggaagtctgtagaagttgagtact
aatgattcaagctattttctgtctgtggaagtctgaatccatagatactt
gctctacagatattgaaggtcaattctttatctgaagtgcttagtatcat
atttaaattagcaacagggttgtaactggcatttagaagtttctggaagt
cattttttaaaaaattatttattcaatttacatcccaacatcagcaccct
gtctcctcccaataacccttcacacaaatcctactccccattgtccctcc
ccttcttttctctcccccagggcatgaagtcagtgcaggactagacacat
cctctctcactaaagccaggcaagtttgaccagttaaaggaataggaccc
acaggcaggcaaaggattcaggtacagcccctgctccagttttggggacc
tacatgaagaccaagctgctcatctgctacacatgtgcaggtggccctag
gtcgctcccacgcttgctctttggtttagtgattcagtcagtggctctgg
gaaagttctttacataagactttcaatatgaagctaccagtagaaatgcc
actcatcatcacaatagggttatcccactaaaacaatttccagggccagg
gagatgggttcagttggcaaggttcttgccttacaagaggagtgagaatt
tactttgggtctccagacccacaataaagagcagagagtgctgtcatatg
cttgcaatggagatgagatcaccgggggaggtagaagacaggagggatcc
ttgggaactctctatccacatcctaaactattttgtgaatttcctcatca
atacaagctttgaattcactcaatgatggatggtctgaaaatgaacctga
aatagccttcgaacctcaattgtaggtgtgtacctcacattttcgtgcat
tacgttcagccacgcactcacaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28993017_28994217
seq2: B6Ng01-263E06.b_44_1243

seq1  GAATTCACTGCAAGCCCCAGTTTCTTAGAGACCCTGCCTCTTAACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAAGCCCCAGTTTCTTAGAGACCCTGCCTCTTAACACCAG  50

seq1  GTACAAGGCAGGTAGGTCAGTGAGGTACAGCACTTGCTCATCATGTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGCAGGTAGGTCAGTGAGGTACAGCACTTGCTCATCATGTGCAC  100

seq1  ATCTCTGGGTGGGAACCCAAGAACCATAGAAACTACAAAAGAGTGACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGGGTGGGAACCCAAGAACCATAGAAACTACAAAAGAGTGACGAA  150

seq1  GAGAGTTACCATATGTCCATAATCTATGGGCATGTATCTATCGAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTACCATATGTCCATAATCTATGGGCATGTATCTATCGAATATAA  200

seq1  ACTCGATTTGATTTCAGACTTTTACAGGTTGAATCCAAATGCCTTCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGATTTGATTTCAGACTTTTACAGGTTGAATCCAAATGCCTTCTCAC  250

seq1  TGCCTTTGTCATGGAAGAGGGGGCTGTTACTAGCAACTATTAGCAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTCATGGAAGAGGGGGCTGTTACTAGCAACTATTAGCAACTAT  300

seq1  TTGACACCTGACCACACGTGTTCAAGCATTTAGTTGTGTGTATGTGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACCTGACCACACGTGTTCAAGCATTTAGTTGTGTGTATGTGTGTG  350

seq1  TGTGTGTTTGTGTACTCATATATGAATGTGAACACCTTTTTGTGTCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTGTGTACTCATATATGAATGTGAACACCTTTTTGTGTCAATA  400

seq1  TATGTTGCTAAAATGCCTTCCAAAGGGGAGATGTTAACAATATCTACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGCTAAAATGCCTTCCAAAGGGGAGATGTTAACAATATCTACCCA  450

seq1  TTATTGTAAGGTAACAAAACAAACCAAGGCTTGATTCCATCAGTGTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAAGGTAACAAAACAAACCAAGGCTTGATTCCATCAGTGTTCAT  500

seq1  TCCAGGGAACCAATGAGATAATTGTTCTTTCTTATAGTTTATAGTTGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGAACCAATGAGATAATTGTTCTTTCTTATAGTTTATAGTTGAGG  550

seq1  AGCTACTAGCAGGTATGTGGTGATCCTTCTACAGTAGGCAGTACCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTAGCAGGTATGTGGTGATCCTTCTACAGTAGGCAGTACCTATAA  600

seq1  AGCTTTTCCCCATCGTTGATAAGGTGTTCCCCCTTAGCTGAATAGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCCCATCGTTGATAAGGTGTTCCCCCTTAGCTGAATAGATAAG  650

seq1  TGTGTCCTTGTCTCCCTTCTCTGACCTATATGTGCAAAGTCCTCCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTGTCTCCCTTCTCTGACCTATATGTGCAAAGTCCTCCCTGAG  700

seq1  ACTATATGCAGTTAAGGTAGTGTTAAATACAACAGATAGTAGTGAATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATGCAGTTAAGGTAGTGTTAAATACAACAGATAGTAGTGAATGGT  750

seq1  AAAATACTCTGATGAGGGTCTGGTGACTCCACATTCCTCCTTGAGAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTCTGATGAGGGTCTGGTGACTCCACATTCCTCCTTGAGAGGTT  800

seq1  ATGAACAGTAAGCAAGAAAAAGGTGATTGTCATAGGGACTTATCGCAGCA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAACAGTAAGCAAGAAAAAGGTGA-TGTCATAGGGACTTATCGCAGCA  849

seq1  AAAGACACCATGG-CCAAGGCAACTCTTAAAAAAGCAAGCATTTAATTGA  899
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AAAGACACCATGGCCCAAGGCAACTCTT-AAAAAGCAAGCATTTAATTGA  898

seq1  GGCTAGCTTACAGAGGCTTAGTCCATTATCATCATG-GTGGGAAGAATGG  948
      |||||||||||||| ||||||| ||||||||||||| |||||||| ||||
seq2  GGCTAGCTTACAGATGCTTAGTTCATTATCATCATGTGTGGGAAG-ATGG  947

seq1  CA--GTGTCTACTTGGATGTGGGG-CTGGAGGAGCCTACA-TTTTGATCT  994
      ||   |||||||| |||||||||| ||||||||||||||| |||||||||
seq2  CAAGTTGTCTACTGGGATGTGGGGCCTGGAGGAGCCTACATTTTTGATCT  997

seq1  --GAAGGCAGGCAGGAGGAGAATGAT--GTGTC-TTGCAC-TGCAAGGTG  1038
         |||||| |||||  ||| |||||   |||| |||||| |||||||||
seq2  TGAAAGGCA-GCAGGGAGAG-ATGATTGTTGTCTTTGCACTTGCAAGGTG  1045

seq1  GAGCA-TATACAACCCCAAAGCCCCATC-TCCACA-GTG-ACACACTCTC  1084
      ||||| |||||||||| |||||| |||| || ||| ||| ||||||||||
seq2  GAGCATTATACAACCCTAAAGCCTCATCTTCGACATGTGAACACACTCTC  1095

seq1  TAACAAGGCCACAACTCCTAGTCGTGCCACTCCTAGGGCAAAGCATATTC  1134
      |||  ||| ||||||| ||||||||||   |||||||||||   |||| |
seq2  TAAACAGG-CACAACT-CTAGTCGTGCACTTCCTAGGGCAAGCTATATAC  1143

seq1  AATTACATGAGTTTATGGGGGTCACACCTATTCAAACCAC-CACAGTGAT  1183
      | | ||   ||  |||||||||||  |||||     | || || || |||
seq2  ATTAACTGTAG--TATGGGGGTCA-TCCTAT-----CTACGCAAAG-GAT  1184

seq1  ATAATCATTCTGCAATTG  1201
       || ||| ||||||||||
seq2  -TATTCA-TCTGCAATTG  1200


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