BAC Information

Click to search

BAC

Clone NameB6Ng01-263O05
Chromosome18 (Build37)
Map Location 37,320,745 - 37,427,559
singlet/doubletdoublet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1
Upstream geneLOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263O05.bB6Ng01-263O05.g
ACCGA067941GA067942
length1,1101,212
definitionB6Ng01-263O05.b B6Ng01-263O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,320,745 - 37,321,858)(37,426,351 - 37,427,559)
sequence
gaattccagtgtcagacttacttactgactacacaaaaccaagtgcctaa
atgcatcgcagtgtttggcatggaacatcaacgcatatgtagtcagctta
ctcatgtttggggggaaataattgcatggcttgtaatctactatctggct
ttgactgatgacctgatgtttagaatccagtagttcccatttgtaggtcc
agatacaggtcctctgaggttacctggattgttcaacatccttagagttg
agtcacccactgctgcactcctgggcactgggagaggagcctttatttgt
tgctccttgaagaaaaggaaaatgcttctccaagcttggttttcagtctc
aaacaaagcctgtttttcactgacttcatgtgctttatgatgaaggtgca
attgtttctggaaggtttctttcttgtgcttgtggcttcttccacttgta
tctgagctcttcccgtgtcttgtcactgaccgtccttttatgccaatgcc
atagtggccgtgaccaggggcataaaggaacatggacccactttgcactg
cttcttactcatgtgtgtgcctcttgcagttgttttcccttttaatcctt
ctgttttgctggtaagctcttcatttaacttcacagtcttcagaagcctg
gggtaaagaagctatattctgaagggctcaatggaggcattacaggtgat
gttttctgtaggataaacaagtcaggcattaaattgggtaattctgatta
ctggcccctgttctccagtcttgccttttgtaataagcagacctggatca
catgtctccttatttccttccagcttcccttgagattaagcacagagaaa
attagctaaacagtgaatgcacaaaatacagttacagcctctgcaaggat
ggaggaatgcgttttagaggcagggacattaaagggctaggcactggtgt
gcaacttttaactttggtgaatgccttgatagtcttttttttcctttggt
tttctacttactcttttcgacctccactctgtagaccaggctgtccttga
acctcagaaatccgcctgcctcttgcctccaagtgcctgggataaaggcg
tgcgcgccac
gaattcaccaccactctcaggcaatctcaatttttaatcagagctgagag
tcagtgctcttccctatgcatgaaaaaactttctactgggaaatggctta
aaggtaaaataaacagctctttctatatatggaactaaatacttctcagg
ccatggccatgggcaacataaaaaataaaaggtggactgttcattttttg
cttagcacacaagagaggggaaagcagaatttacacacagtaacatttct
ttaaaagaactccagatgcatatataatctagggatcaggatacttgtct
tatattaagcctcagtctgagtttcctatttccatcaaactaggtactgc
tgtttccatcaaaattgcagtctactgtttccataaggatgactctttga
agatggactataacatcctgtttctcttctcatgagagatgttagccaga
attacatatactcatctcctatccggtcatggcccgctgaaccccgagac
cgatttttattagaacctggaggcaaactggagtcatcctctgttttcac
ctctccagtggcatgggggaatgggaaattgggcataaatcgcttaagaa
aacggaactcactattcccagttcccgtggctgagcacatatcatatgga
caaggctgagataaggaaccattgcctcttccttgaaccaagttgttagg
gaaattacagtcatcatagaagtgctcttgaattgtgaatttgtctctgt
gtttaatcttctggtagaggtgtataataaagatcacagtgacagacaag
agaaaaagaaaagaaagcacagacagagaaatgaccaaatattttgtggt
tggatttacctttctagaatgcttggatggatcctggaactgcaagtatg
gctctgaaaagccatctaccagcaggatgttaagtgaggccgtagtggag
agagctggttggccatgatcctgaacaagaatgaccagtttctgcatcat
ggggtctcctcctcagatatctgcctcagtgttacgtatttccccatttt
gtctttgaacagaaaaataacccaaagttctgtggctttaagaaagatgc
tatggaagccagaattctgccaaagtcaccatcaacagctactatacttt
ggctcaccaaggatatcctgcctctgcacctgtactagtcatgccagcaa
agtgcccattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37320745_37321858
seq2: B6Ng01-263O05.b_46_1155

seq1  GAATTCCAGTGTCAGACTTACTTACTGACTACACAAAACCAAGTGCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTCAGACTTACTTACTGACTACACAAAACCAAGTGCCTAA  50

seq1  ATGCATCGCAGTGTTTGGCATGGAACATCAACGCATATGTAGTCAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCGCAGTGTTTGGCATGGAACATCAACGCATATGTAGTCAGCTTA  100

seq1  CTCATGTTTGGGGGGAAATAATTGCATGGCTTGTAATCTACTATCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTGGGGGGAAATAATTGCATGGCTTGTAATCTACTATCTGGCT  150

seq1  TTGACTGATGACCTGATGTTTAGAATCCAGTAGTTCCCATTTGTAGGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGATGACCTGATGTTTAGAATCCAGTAGTTCCCATTTGTAGGTCC  200

seq1  AGATACAGGTCCTCTGAGGTTACCTGGATTGTTCAACATCCTTAGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAGGTCCTCTGAGGTTACCTGGATTGTTCAACATCCTTAGAGTTG  250

seq1  AGTCACCCACTGCTGCACTCCTGGGCACTGGGAGAGGAGCCTTTATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCACTGCTGCACTCCTGGGCACTGGGAGAGGAGCCTTTATTTGT  300

seq1  TGCTCCTTGAAGAAAAGGAAAATGCTTCTCCAAGCTTGGTTTTCAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTGAAGAAAAGGAAAATGCTTCTCCAAGCTTGGTTTTCAGTCTC  350

seq1  AAACAAAGCCTGTTTTTCACTGACTTCATGTGCTTTATGATGAAGGTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCCTGTTTTTCACTGACTTCATGTGCTTTATGATGAAGGTGCA  400

seq1  ATTGTTTCTGGAAGGTTTCTTTCTTGTGCTTGTGGCTTCTTCCACTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTGGAAGGTTTCTTTCTTGTGCTTGTGGCTTCTTCCACTTGTA  450

seq1  TCTGAGCTCTTCCCGTGTCTTGTCACTGACCGTCCTTTTATGCCAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTCTTCCCGTGTCTTGTCACTGACCGTCCTTTTATGCCAATGCC  500

seq1  ATAGTGGCCGTGACCAGGGGCATAAAGGAACATGGACCCACTTTGCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGCCGTGACCAGGGGCATAAAGGAACATGGACCCACTTTGCACTG  550

seq1  CTTCTTACTCATGTGTGTGCCTCTTGCAGTTGTTTTCCCTTTTAATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTACTCATGTGTGTGCCTCTTGCAGTTGTTTTCCCTTTTAATCCTT  600

seq1  CTGTTTTGCTGGTAAGCTCTTCATTTAACTTCACAGTCTTCAGAAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCTGGTAAGCTCTTCATTTAACTTCACAGTCTTCAGAAGCCTG  650

seq1  GGGTAAAGAAGCTATATTCTGAAGGGCTCAATGGAGGCATTACAGGTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGAAGCTATATTCTGAAGGGCTCAATGGAGGCATTACAGGTGAT  700

seq1  GTTTTCTGTAGGATAAACAAGTCAGGCATTAAATTGGGTAATTCTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTAGGATAAACAAGTCAGGCATTAAATTGGGTAATTCTGATTA  750

seq1  CTGGCCCCTGTTCTCCAGTCTTGCCTTTTGTAATAAGCAGACCTGGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCCTGTTCTCCAGTCTTGCCTTTTGTAATAAGCAGACCTGGATCA  800

seq1  CATGTCTCCTTATTTCCTTCCAGCTTCCCTTGAGATTAAGCACAGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCCTTATTTCCTTCCAGCTTCCCTTGAGATTAAGCACAGAGAAA  850

seq1  ATTAGCTAAACAGTGAATGCACAAAATACAGTTACAGCCTCTGCAAGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTAAACAGTGAATGCACAAAATACAGTTACAGCCTCTGCAAGGAT  900

seq1  GGAGGAATGCGTTTTAGAGGCAGGGACATTAAAGGGCTAGGCACTGGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATGCGTTTTAGAGGCAGGGACATTAAAGGGCTAGGCACTGGTGT  950

seq1  GCAACTTTTAACTTTGGGTGAATGCCTTGATAAGGTCTTTTTTTTTCCTT  1000
      ||||||||||||||| ||||||||||||||||  |||||||||||  | |
seq2  GCAACTTTTAACTTT-GGTGAATGCCTTGATA--GTCTTTTTTTT--CCT  995

seq1  TTGGTTTTCTACCTTACTCTTTTCGACCT-CACTCTGTAGACCAGGCTGT  1049
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  TTGGTTTTCTA-CTTACTCTTTTCGACCTCCACTCTGTAGACCAGGCTGT  1044

seq1  CCTTGAA-CTCAGAAATCCGCCTGCCTC-TGCCTCCCAAGTG-CTGGGAT  1096
      ||||||| |||||||||||||||||||| ||||| ||||||| |||||| 
seq2  CCTTGAACCTCAGAAATCCGCCTGCCTCTTGCCT-CCAAGTGCCTGGGA-  1092

seq1  TAAAGGCGTGCGCGCCAC  1114
      ||||||||||||||||||
seq2  TAAAGGCGTGCGCGCCAC  1110

seq1: chr18_37426351_37427559
seq2: B6Ng01-263O05.g_67_1278 (reverse)

seq1  AGAAT-GGCACTTTGCCCTGCAATGACCTAGTACCAAGGTCTGCAGAGGC  49
      ||||| |||||||||  |||  |||| |||||||  |||  |||||||||
seq2  AGAATGGGCACTTTG--CTGGCATGA-CTAGTAC--AGG--TGCAGAGGC  43

seq1  AGGATA--CCTGGTGA-CCAAAG--TAGTAGCTGTTGATGGTGACTCTGG  94
      ||||||  | |||||| ||||||  ||||||||||||||||||||| | |
seq2  AGGATATCCTTGGTGAGCCAAAGTATAGTAGCTGTTGATGGTGACT-TTG  92

seq1  GCAGAATTCTTGGCTTTCATACCATC-TTCTTAAAGCCACAG-ACCTTGG  142
      ||||||||| |||||| |||| |||| ||||||||||||||| || ||||
seq2  GCAGAATTC-TGGCTTCCATAGCATCTTTCTTAAAGCCACAGAACTTTGG  141

seq1  GTTA-TTTTCTGTTCAAAGACAAAATGGGGAAATACGT-ACACTGAGGCA  190
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTATTTTTCTGTTCAAAGACAAAATGGGGAAATACGTAACACTGAGGCA  191

seq1  GATATCTGAG--AGAGACCCCATGATGCAGAAACTGGTCATTCTTGTTCA  238
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  GATATCTGAGGAGGAGACCCCATGATGCAGAAACTGGTCATTCTTGTTCA  241

seq1  GGATCATGGCCAACCAGCTCTCTCCACTACGGCCTCACTTAACATCCTGC  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGGCCAACCAGCTCTCTCCACTACGGCCTCACTTAACATCCTGC  291

seq1  TGGTAGATGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCCATCCAAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATGGCTTTTCAGAGCCATACTTGCAGTTCCAGGATCCATCCAAG  341

seq1  CATTCTAGAAAGGTAAATCCAACCACAAAATATTTGGTCATTTCTCTGTC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAAAGGTAAATCCAACCACAAAATATTTGGTCATTTCTCTGTC  391

seq1  TGTGCTTTCTTTTCTTTTTCTCTTGTCTGTCACTGTGATCTTTATTATAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTCTTTTCTTTTTCTCTTGTCTGTCACTGTGATCTTTATTATAC  441

seq1  ACCTCTACCAGAAGATTAAACACAGAGACAAATTCACAATTCAAGAGCAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTACCAGAAGATTAAACACAGAGACAAATTCACAATTCAAGAGCAC  491

seq1  TTCTATGATGACTGTAATTTCCCTAACAACTTGGTTCAAGGAAGAGGCAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGATGACTGTAATTTCCCTAACAACTTGGTTCAAGGAAGAGGCAA  541

seq1  TGGTTCCTTATCTCAGCCTTGTCCATATGATATGTGCTCAGCCACGGGAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTTATCTCAGCCTTGTCCATATGATATGTGCTCAGCCACGGGAA  591

seq1  CTGGGAATAGTGAGTTCCGTTTTCTTAAGCGATTTATGCCCAATTTCCCA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATAGTGAGTTCCGTTTTCTTAAGCGATTTATGCCCAATTTCCCA  641

seq1  TTCCCCCATGCCACTGGAGAGGTGAAAACAGAGGATGACTCCAGTTTGCC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCATGCCACTGGAGAGGTGAAAACAGAGGATGACTCCAGTTTGCC  691

seq1  TCCAGGTTCTAATAAAAATCGGTCTCGGGGTTCAGCGGGCCATGACCGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTCTAATAAAAATCGGTCTCGGGGTTCAGCGGGCCATGACCGGA  741

seq1  TAGGAGATGAGTATATGTAATTCTGGCTAACATCTCTCATGAGAAGAGAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGATGAGTATATGTAATTCTGGCTAACATCTCTCATGAGAAGAGAA  791

seq1  ACAGGATGTTATAGTCCATCTTCAAAGAGTCATCCTTATGGAAACAGTAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTTATAGTCCATCTTCAAAGAGTCATCCTTATGGAAACAGTAG  841

seq1  ACTGCAATTTTGATGGAAACAGCAGTACCTAGTTTGATGGAAATAGGAAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATTTTGATGGAAACAGCAGTACCTAGTTTGATGGAAATAGGAAA  891

seq1  CTCAGACTGAGGCTTAATATAAGACAAGTATCCTGATCCCTAGATTATAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACTGAGGCTTAATATAAGACAAGTATCCTGATCCCTAGATTATAT  941

seq1  ATGCATCTGGAGTTCTTTTAAAGAAATGTTACTGTGTGTAAATTCTGCTT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTGGAGTTCTTTTAAAGAAATGTTACTGTGTGTAAATTCTGCTT  991

seq1  TCCCCTCTCTTGTGTGCTAAGCAAAAAATGAACAGTCCACCTTTTATTTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCTTGTGTGCTAAGCAAAAAATGAACAGTCCACCTTTTATTTT  1041

seq1  TTATGTTGCCCATGGCCATGGCCTGAGAAGTATTTAGTTCCATATATAGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGCCCATGGCCATGGCCTGAGAAGTATTTAGTTCCATATATAGA  1091

seq1  AAGAGCTGTTTATTTTACCTTTAAGCCATTTCCCAGTAGAAAGTTTTTTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTTTATTTTACCTTTAAGCCATTTCCCAGTAGAAAGTTTTTTC  1141

seq1  ATGCATAGGGAAGAGCACTGACTCTCAGCTCTGATTAAAAATTGAGATTG  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGGGAAGAGCACTGACTCTCAGCTCTGATTAAAAATTGAGATTG  1191

seq1  CCTGAGAGTGGTGGTGAATTC  1209
      |||||||||||||||||||||
seq2  CCTGAGAGTGGTGGTGAATTC  1212