BAC Information

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BAC

Clone NameB6Ng01-264H22
Chromosome18 (Build37)
Map Location 16,883,103 - 17,074,391
singlet/doubletdoublet
Overlap geneCdh2, LOC665519
Upstream geneLOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream gene1700001G01Rik, 4921533I20Rik, LOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264H22.bB6Ng01-264H22.g
ACCGA068384GA068385
length1,165768
definitionB6Ng01-264H22.b B6Ng01-264H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,073,225 - 17,074,391)(16,883,103 - 16,883,870)
sequence
gaattcatttggaactatgttgaaagtgagctttgagagaatgcatgact
tccattctggaatctttcttttcctctttaagccaatattttcttttatg
gattgtcagttattcaccatgacaccagaagaatagttttcaagtgatat
gtagctgaatttattctttcttttcaaattgtgctctgcagtccacaaat
gaaatgattaatagtttgctctaaagaatgaacattttcaattgggatat
tcatcacagagctacaggactttacagagccctttgctaatcactccctt
gggcatttctagtataaccttatgaaaagcaatactatatagtctacata
ctgcctacttgtctacattattcatgttgtaaatgttttctaaagttaag
tcagcttcagttgtgtggaactaaactcaaatgcagattctttccccaga
taattatatgaccttgatccttatgattggactccgggtcagatcaatca
catcgctgaagtggaagagattcttgtggtacaagtcactttgggagagg
taactgaggtatatttcagtcttccattgaccttcagctatgctctctgg
aaatcctttgttccaaaactcacaatacgtatcataatttacaggggcac
acgactaccaagtgcagtaaagaggatcactccattctttcactttctgt
ctgttctcagaaatatctccaaatcatgctcactctctctctctctctct
ctctctgagcctaactccatgggaaaaaaatcacaattctcacagcaagc
cctggcaacaaaatggtcggagcagaatagttttagtgtagcagtctgat
aaacaagactttcacgcacaaagaaaatgatgccacttataagaataaat
acttaatttaaagttgcttgtgtgagcctggagaagaagttaattcttgg
agtatgagcaactaaaagaggtacaatgttgaaagggaaagggaagagta
ttattatgctcaagatgcattatatttgcaatataattatcaaaaaacag
cttattatcatgctatgcatagttatgcagtatcaaaatctgtgaatcca
ttgtttgcctttcaccaaggaccaaatgttgtatcactgtgctcacagta
ggaattgaatggaga

gaattccctccacagcactggacatataaaggcgcatatcaccgacttta
acttgtacttgcacaaaaatatttaaattggagtgactccataaagagtg
gaatgtcctaaagtcagggaaaagatgcctaagggcaagaattttggtaa
aaatgtacagaaaaattttataaaattcttgtaataaatattagcagaaa
aatgattcttgttaacaaacaaaaagttttaagatattaaggtgaaattt
tatgtctgctcaaaaggtagggctttaatactatgtataacataaaatga
tattgtaatactgttaattagcaaaacttatttgaaaaggaatatccaaa
tatgcagcaaacgctatgaagaagttttatgtgattttcctcttgaggga
tgttctccccaaatgaaacagaaataataaaaaaagaaccacaggaaata
aaaatgatatgagcactaaattattcatttggtgttagtaattaagacac
atagaagctggggagatggcttggttggcgcacggcacaagcacaaaccc
tgtgttcaaatctccagtgtgaatgtgaaggctgggtgtgagggtacctg
cagtagcccagtaaagtggcggggtgggggttggggggcagtagcagacc
cagcataatcccagaactcactggctggtcacctaagacaatttagtaag
ctccgagtgcagatggagagcaaaagaagacacccaacattacacacaga
cattgtgatcacaaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17073225_17074391
seq2: B6Ng01-264H22.b_45_1209 (reverse)

seq1  TCTCCATTCATATCCTACTGTGAAGCCACAGTGATACAACATTTTGGTCT  50
      ||||||||||  |||||||||||   |||||||||||||||||| |  ||
seq2  TCTCCATTCAATTCCTACTGTGA--GCACAGTGATACAACATTTGGTCCT  48

seq1  TGGTGAAAGGCAAACAAATGGA-TCACAGATTTTGATACTGCATAACTAT  99
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TGGTGAAAGGCAAAC-AATGGATTCACAGATTTTGATACTGCATAACTAT  97

seq1  GCATAAGCATGATAATAAGCTTGTTTTTTGATAATTATATTTGCAAATAT  149
      |||| ||||||||||||||| |||||||||||||||||| ||||||||||
seq2  GCAT-AGCATGATAATAAGC-TGTTTTTTGATAATTATA-TTGCAAATAT  144

seq1  AATGCATCTTGAGCATA--TATACTCTTCCCTTT-CCTTTCAACATTGTA  196
      |||||||||||||||||   |||||||||||||| |||||||||||||||
seq2  AATGCATCTTGAGCATAATAATACTCTTCCCTTTCCCTTTCAACATTGTA  194

seq1  CCTCTTTTTAGTTGCTCATACTCCAAGAATTAACTTC-TCTCCAGGCTCA  245
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTC-TTTTAGTTGCTCATACTCCAAGAATTAACTTCTTCTCCAGGCTCA  243

seq1  CACAAGCAACTTTAAATTAAGTATTTATTCTTATAAGTGGCATCATTTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAACTTTAAATTAAGTATTTATTCTTATAAGTGGCATCATTTTC  293

seq1  TTTGTGCGTGAAAGTCTTGTTTATCAGACTGCTACACTAAAACTATTCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCGTGAAAGTCTTGTTTATCAGACTGCTACACTAAAACTATTCTG  343

seq1  CTCCGACCATTTTGTTGCCAGGGCTTGCTGTGAGAATTGTGATTTTTTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGACCATTTTGTTGCCAGGGCTTGCTGTGAGAATTGTGATTTTTTTC  393

seq1  CCATGGAGTTAGGCTCAGAGAGAGAGAGAGAGAGAGAGAGTGAGCATGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGTTAGGCTCAGAGAGAGAGAGAGAGAGAGAGAGTGAGCATGAT  443

seq1  TTGGAGATATTTCTGAGAACAGACAGAAAGTGAAAGAATGGAGTGATCCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATATTTCTGAGAACAGACAGAAAGTGAAAGAATGGAGTGATCCT  493

seq1  CTTTACTGCACTTGGTAGTCGTGTGCCCCTGTAAATTATGATACGTATTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTGCACTTGGTAGTCGTGTGCCCCTGTAAATTATGATACGTATTG  543

seq1  TGAGTTTTGGAACAAAGGATTTCCAGAGAGCATAGCTGAAGGTCAATGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGGAACAAAGGATTTCCAGAGAGCATAGCTGAAGGTCAATGGA  593

seq1  AGACTGAAATATACCTCAGTTACCTCTCCCAAAGTGACTTGTACCACAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAATATACCTCAGTTACCTCTCCCAAAGTGACTTGTACCACAAG  643

seq1  AATCTCTTCCACTTCAGCGATGTGATTGATCTGACCCGGAGTCCAATCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTCCACTTCAGCGATGTGATTGATCTGACCCGGAGTCCAATCAT  693

seq1  AAGGATCAAGGTCATATAATTATCTGGGGAAAGAATCTGCATTTGAGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCAAGGTCATATAATTATCTGGGGAAAGAATCTGCATTTGAGTTT  743

seq1  AGTTCCACACAACTGAAGCTGACTTAACTTTAGAAAACATTTACAACATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACACAACTGAAGCTGACTTAACTTTAGAAAACATTTACAACATG  793

seq1  AATAATGTAGACAAGTAGGCAGTATGTAGACTATATAGTATTGCTTTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAGACAAGTAGGCAGTATGTAGACTATATAGTATTGCTTTTCA  843

seq1  TAAGGTTATACTAGAAATGCCCAAGGGAGTGATTAGCAAAGGGCTCTGTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTTATACTAGAAATGCCCAAGGGAGTGATTAGCAAAGGGCTCTGTA  893

seq1  AAGTCCTGTAGCTCTGTGATGAATATCCCAATTGAAAATGTTCATTCTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTGTAGCTCTGTGATGAATATCCCAATTGAAAATGTTCATTCTTT  943

seq1  AGAGCAAACTATTAATCATTTCATTTGTGGACTGCAGAGCACAATTTGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACTATTAATCATTTCATTTGTGGACTGCAGAGCACAATTTGAA  993

seq1  AAGAAAGAATAAATTCAGCTACATATCACTTGAAAACTATTCTTCTGGTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAATAAATTCAGCTACATATCACTTGAAAACTATTCTTCTGGTG  1043

seq1  TCATGGTGAATAACTGACAATCCATAAAAGAAAATATTGGCTTAAAGAGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGAATAACTGACAATCCATAAAAGAAAATATTGGCTTAAAGAGG  1093

seq1  AAAAGAAAGATTCCAGAATGGAAGTCATGCATTCTCTCAAAGCTCACTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGATTCCAGAATGGAAGTCATGCATTCTCTCAAAGCTCACTTT  1143

seq1  CAACATAGTTCCAAATGAATTC  1167
      ||||||||||||||||||||||
seq2  CAACATAGTTCCAAATGAATTC  1165


seq1: chr18_16883103_16883870
seq2: B6Ng01-264H22.g_65_832

seq1  GAATTCCCTCCACAGCACTGGACATATAAAGGCGCATATCACCGACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCACAGCACTGGACATATAAAGGCGCATATCACCGACTTTA  50

seq1  ACTTGTACTTGCACAAAAATATTTAAATTGGAGTGACTCCATAAAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACTTGCACAAAAATATTTAAATTGGAGTGACTCCATAAAGAGTG  100

seq1  GAATGTCCTAAAGTCAGGGAAAAGATGCCTAAGGGCAAGAATTTTGGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCCTAAAGTCAGGGAAAAGATGCCTAAGGGCAAGAATTTTGGTAA  150

seq1  AAATGTACAGAAAAATTTTATAAAATTCTTGTAATAAATATTAGCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTACAGAAAAATTTTATAAAATTCTTGTAATAAATATTAGCAGAAA  200

seq1  AATGATTCTTGTTAACAAACAAAAAGTTTTAAGATATTAAGGTGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCTTGTTAACAAACAAAAAGTTTTAAGATATTAAGGTGAAATTT  250

seq1  TATGTCTGCTCAAAAGGTAGGGCTTTAATACTATGTATAACATAAAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGCTCAAAAGGTAGGGCTTTAATACTATGTATAACATAAAATGA  300

seq1  TATTGTAATACTGTTAATTAGCAAAACTTATTTGAAAAGGAATATCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAATACTGTTAATTAGCAAAACTTATTTGAAAAGGAATATCCAAA  350

seq1  TATGCAGCAAACGCTATGAAGAAGTTTTATGTGATTTTCCTCTTGAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCAAACGCTATGAAGAAGTTTTATGTGATTTTCCTCTTGAGGGA  400

seq1  TGTTCTCCCCAAATGAAACAGAAATAATAAAAAAAGAACCACAGGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCCCAAATGAAACAGAAATAATAAAAAAAGAACCACAGGAAATA  450

seq1  AAAATGATATGAGCACTAAATTATTCATTTGGTGTTAGTAATTAAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATATGAGCACTAAATTATTCATTTGGTGTTAGTAATTAAGACAC  500

seq1  ATAGAAGCTGGGGAGATGGCTTGGTTGGCGCACGGCACAAGCACAAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGCTGGGGAGATGGCTTGGTTGGCGCACGGCACAAGCACAAACCC  550

seq1  TGTGTTCAAATCTCCAGTGTGAATGTGAAGGCTGGGTGTGAGGGTACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAAATCTCCAGTGTGAATGTGAAGGCTGGGTGTGAGGGTACCTG  600

seq1  CAGTAGCCCAGTAAAGTGGCGGGGTGGGGGTTGGGGGGCAGTAGCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCCAGTAAAGTGGCGGGGTGGGGGTTGGGGGGCAGTAGCAGACC  650

seq1  CAGCAGAATCCCAGAACTCACTGGCTGGTCACCTAAGACAA-TTAGTAAG  699
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGCATAATCCCAGAACTCACTGGCTGGTCACCTAAGACAATTTAGTAAG  700

seq1  CTCCGAGTGCAGATGGAGAGCAAAAGAAGACACCCAACATTACACACAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAGTGCAGATGGAGAGCAAAAGAAGACACCCAACATTACACACAGA  750

seq1  CACTGTGATACACAAATAC  768
      || |||||| |||||||||
seq2  CATTGTGAT-CACAAATAC  768


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