BAC Information

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BAC

Clone NameB6Ng01-264K06
Chromosome18 (Build37)
Map Location 81,282,547 - 81,464,906
singlet/doubletdoublet
Overlap genenone
Upstream genePard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
Downstream geneLOC100039458, LOC100040871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264K06.bB6Ng01-264K06.g
ACCGA068490GA068491
length1,154980
definitionB6Ng01-264K06.b B6Ng01-264K06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,282,547 - 81,283,708)(81,463,919 - 81,464,906)
sequence
ggaattccttccacccgtagatttaattgtcgtcagctgcagaggacagg
gtgcactgaccagagaagtgggggtcgggggtgggacaagccgagaatgc
aggccccgggcggtctgcagccttcgggagggaggggtggctggcctgag
gatgcatgcttgctctgggtagtctgcgacagaccgtgcacctatccatg
cgttccccagcagggggacaggagcccctgagatctgataagattttttt
gcagaaaggactagatcaaaccataacgccgagaaccctttgtctgagct
ctggcgcaaaagactgagagccagacaaatggcaattcaagggttttaaa
ggtaacttgttgcttacctacctgagtcacttgttccccagaggcatgga
ctcataggcactgggggccaacctggcctcccctagcttacaatttctcc
ctgagaccctgctttgtcacattagagcacaggcaggtttcttctggact
tgctggtggccgagtggacagggaagggaggcagcccagctaattgctcc
ttcacagggtggaaattcgctcgctgctaattcgagactccagcaatgat
gataatagcgacgctaatgactgtgggaaggggattataggtaagacaca
gttataatcaggaagctggtaattaccttgtagccacaactgggcttttg
aattttatatttcttgcattttttttagttcttaattacaatagttctat
taatgagagatggccttccagcagtagatggggttcatcatgagggaaga
agcatgcgtagtaccctggtcttctcgggctggggagagactcatggaag
tggcttgttccttccacatgaagagagacagcgttagcgagctcctgagg
gcacacggggtagtggtgggctggggtttccacttgtccactgtctcgtg
caccccaaggaattcaaggctggtctcctaacccaaggtgactttgagca
gagtcccaccatcagcagggccagtgctggaaagctcatgccacaacaca
ggggcttcaaatatgactgcctgacctctgattgttccatgtctgggaag
accccccctccccaccttgatgtacatgaaagtatgtctagaaaaagtcc
catg
gaattcatagcaatgacagtgtcagctatcagataataatgtgaatcagc
aagccaagttaatgtatataatcttattgcttgcaaatatggggaaatct
aacacacactaaagatgaaaaatcatacagatgatgacagagaacaattg
cttcagggtagtgatggcctataggaaacctcccacttgttaacaccatc
cttagtgggaatttcccactcattaacaagatccctagtggggaaatcat
atgtacatactcatactctccctcaagactgagcacactgagtgtcatct
ctactggtctggtcagtgttttaactgaagtgctcacctgtacaaaagga
caagaaaatagacaaagacttggatatgaaaggaaaatatgaatatggtt
tttcacctatggcatgcctgtctatgtagatgatcccacagggaaagaaa
cccttcctgaactggaaggaataccaagtttcaaaaaatggtgcaaatat
gggaggtcttttaccaacagtggtcaactagacatggaaataccaaataa
tgctgttcacatgctcaacagagaacagggtgaaaacctaaaaaagaagt
caaaattacaaacacaaacaaaataagcccaaggtttctgttaatggatg
gatatttgtctactggaaattcaatatatccatatttcatttcttctcat
atgtccttatagatccaacaaaacaggacagggggaggtactgaacttca
cctgaactgtaaggtcttagatataacaccagaagcacaattgaacatta
aattttctgcttcgttaatgacattgaaaggaaagaaaaaaagagggggg
agagagagaaagaagaagaaagaaagaaagaagaaagaagaaagaaggaa
ggaaggaaggaaggaaggaaggagaaagaagaaagaagtatgaagaaaga
agaagaagaaagaagaaaggagggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_81282547_81283708
seq2: B6Ng01-264K06.b_46_1198

seq1  GAATTCCTTCCACCCGTAGATTTAATTGTCGTCAGCTGCAGAGGACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCACCCGTAGATTTAATTGTCGTCAGCTGCAGAGGACAGGG  50

seq1  TGCACTGACCAGAGAAGTGGGGGTCGGGGGTGGGACAAGCCGAGAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGACCAGAGAAGTGGGGGTCGGGGGTGGGACAAGCCGAGAATGCA  100

seq1  GGCCCCGGGCGGTCTGCAGCCTTCGGGAGGGAGGGGTGGCTGGCCTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCGGGCGGTCTGCAGCCTTCGGGAGGGAGGGGTGGCTGGCCTGAGG  150

seq1  ATGCATGCTTGCTCTGGGTAGTCTGCGACAGACCGTGCACCTATCCATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCTTGCTCTGGGTAGTCTGCGACAGACCGTGCACCTATCCATGC  200

seq1  GTTCCCCAGCAGGGGGACAGGAGCCCCTGAGATCTGATAAGATTTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCAGCAGGGGGACAGGAGCCCCTGAGATCTGATAAGATTTTTTTG  250

seq1  CAGAAAGGACTAGATCAAACCATAACGCCGAGAACCCTTTGTCTGAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGACTAGATCAAACCATAACGCCGAGAACCCTTTGTCTGAGCTC  300

seq1  TGGCGCAAAAGACTGAGAGCCAGACAAATGGCAATTCAAGGGTTTTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCAAAAGACTGAGAGCCAGACAAATGGCAATTCAAGGGTTTTAAAG  350

seq1  GTAACTTGTTGCTTACCTACCTGAGTCACTTGTTCCCCAGAGGCATGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGTTGCTTACCTACCTGAGTCACTTGTTCCCCAGAGGCATGGAC  400

seq1  TCATAGGCACTGGGGGCCAACCTGGCCTCCCCTAGCTTACAATTTCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGCACTGGGGGCCAACCTGGCCTCCCCTAGCTTACAATTTCTCCC  450

seq1  TGAGACCCTGCTTTGTCACATTAGAGCACAGGCAGGTTTCTTCTGGACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCTGCTTTGTCACATTAGAGCACAGGCAGGTTTCTTCTGGACTT  500

seq1  GCTGGTGGCCGAGTGGACAGGGAAGGGAGGCAGCCCAGCTAATTGCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGCCGAGTGGACAGGGAAGGGAGGCAGCCCAGCTAATTGCTCCT  550

seq1  TCACAGGGTGGAAATTCGCTCGCTGCTAATTCGAGACTCCAGCAATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGGTGGAAATTCGCTCGCTGCTAATTCGAGACTCCAGCAATGATG  600

seq1  ATAATAGCGACGCTAATGACTGTGGGAAGGGGATTATAGGTAAGACACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCGACGCTAATGACTGTGGGAAGGGGATTATAGGTAAGACACAG  650

seq1  TTATAATCAGGAAGCTGGTAATTACCTTGTAGCCACAACTGGGCTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATCAGGAAGCTGGTAATTACCTTGTAGCCACAACTGGGCTTTTGA  700

seq1  ATTTTATATTTCTTGCATTTTTTTTAGTTCTTAATTACAATAGTTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATTTCTTGCATTTTTTTTAGTTCTTAATTACAATAGTTCTATT  750

seq1  AATGAGAGATGGCCTTCCAGCAGTAGATGGGGTTCATCATGAGGGAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGATGGCCTTCCAGCAGTAGATGGGGTTCATCATGAGGGAAGAA  800

seq1  GCATGCGTAGTACCCTGGTCTTCTCGGGCTGGGGAGAGACTCATGGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGTAGTACCCTGGTCTTCTCGGGCTGGGGAGAGACTCATGGAAGT  850

seq1  GGCTTGTTCCTTCCAACATGAAGAGAGACAGCGTTAGCGAGCTCCTGAGG  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTCCTTCC-ACATGAAGAGAGACAGCGTTAGCGAGCTCCTGAGG  899

seq1  GCACACGGGGTAGTGGTGGGCTGGGGTTTCCACTTGTCCACTGTCTCGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGGGGTAGTGGTGGGCTGGGGTTTCCACTTGTCCACTGTCTCGTG  949

seq1  CACACC-AGGAATTCAAGGCTGTTCTCCTTAACCAAAGGTGACTTTGAGC  999
      ||| || ||||||||||||||| ||||| ||||| |||||||||||||||
seq2  CACCCCAAGGAATTCAAGGCTGGTCTCC-TAACCCAAGGTGACTTTGAGC  998

seq1  AGAG-CCCACCATCAGCAGGGGCAGTGCTGGAAAGCCTCATGCCACCAAC  1048
      |||| |||||||||||||||| ||||||||||||| ||||||||| ||||
seq2  AGAGTCCCACCATCAGCAGGGCCAGTGCTGGAAAG-CTCATGCCA-CAAC  1046

seq1  ACAAGGGGCTTCAAATATGAACTGCCCTGACCTCTGATTGTTCCCATGGA  1098
      || |||||||||||||||| |||| ||||||||||||||||| |||||  
seq2  AC-AGGGGCTTCAAATATG-ACTG-CCTGACCTCTGATTGTT-CCATG--  1090

seq1  ACT-GGAAGACCCCCCC-CCCCACCTTGTATGTACATTGAAAAGTATGTC  1146
       || ||||||||||||| |||||||||| ||||||||   ||||||||||
seq2  TCTGGGAAGACCCCCCCTCCCCACCTTG-ATGTACAT--GAAAGTATGTC  1137

seq1  TAAGAAAGAG-CCCATG  1162
      | ||||| || ||||||
seq2  T-AGAAAAAGTCCCATG  1153

seq1: chr18_81463919_81464906
seq2: B6Ng01-264K06.g_65_1044 (reverse)

seq1  CCCCCT-CCTCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT--TCTTTC  47
      |||||| ||||||||| ||||||| |||||   |||||||||  |  |||
seq2  CCCCCTCCCTCCTTTC-TTCTTTC-TTCTT--CTTCTTTCTTCATACTTC  46

seq1  TTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTT  97
      |||| ||||||| ||||||||||||||||||||||||||| ||||||| |
seq2  TTTC-TTCTTTC-TCCTTCCTTCCTTCCTTCCTTCCTTCC-TTCTTTC-T  92

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTTCTCCCCCCTC  147
      |||||| |||||||||||||||||   ||||||||||| |||||||||||
seq2  TCTTTC-TTCTTTCTTTCTTTCTT--CTTCTTTCTCTC-TCTCCCCCCTC  138

seq1  TTTTTTTCTTTCC-TTCAATGTCATTAACGAAGCAGAAAATTTAATGTTC  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTCCTTTCAATGTCATTAACGAAGCAGAAAATTTAATGTTC  188

seq1  AATTGTGCTTCTGGTGTTATATCTAAGACCTTACAGTTCAGGTGAAGTTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCTTCTGGTGTTATATCTAAGACCTTACAGTTCAGGTGAAGTTC  238

seq1  AGTACCTCCCCCTGTCCTGTTTTGTTGGATCTATAAGGACATATGAGAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTCCCCCTGTCCTGTTTTGTTGGATCTATAAGGACATATGAGAAG  288

seq1  AAATGAAATATGGATATATTGAATTTCCAGTAGACAAATATCCATCCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATATGGATATATTGAATTTCCAGTAGACAAATATCCATCCATT  338

seq1  AACAGAAACCTTGGGCTTATTTTGTTTGTGTTTGTAATTTTGACTTCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACCTTGGGCTTATTTTGTTTGTGTTTGTAATTTTGACTTCTTT  388

seq1  TTTAGGTTTTCACCCTGTTCTCTGTTGAGCATGTGAACAGCATTATTTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTTTTCACCCTGTTCTCTGTTGAGCATGTGAACAGCATTATTTGG  438

seq1  TATTTCCATGTCTAGTTGACCACTGTTGGTAAAAGACCTCCCATATTTGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCATGTCTAGTTGACCACTGTTGGTAAAAGACCTCCCATATTTGC  488

seq1  ACCATTTTTTGAAACTTGGTATTCCTTCCAGTTCAGGAAGGGTTTCTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTTTGAAACTTGGTATTCCTTCCAGTTCAGGAAGGGTTTCTTTC  538

seq1  CCTGTGGGATCATCTACATAGACAGGCATGCCATAGGTGAAAAACCATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGATCATCTACATAGACAGGCATGCCATAGGTGAAAAACCATAT  588

seq1  TCATATTTTCCTTTCATATCCAAGTCTTTGTCTATTTTCTTGTCCTTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTCCTTTCATATCCAAGTCTTTGTCTATTTTCTTGTCCTTTTG  638

seq1  TACAGGTGAGCACTTCAGTTAAAACACTGACCAGACCAGTAGAGATGACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTGAGCACTTCAGTTAAAACACTGACCAGACCAGTAGAGATGACA  688

seq1  CTCAGTGTGCTCAGTCTTGAGGGAGAGTATGAGTATGTACATATGATTTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGCTCAGTCTTGAGGGAGAGTATGAGTATGTACATATGATTTC  738

seq1  CCCACTAGGGATCTTGTTAATGAGTGGGAAATTCCCACTAAGGATGGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTAGGGATCTTGTTAATGAGTGGGAAATTCCCACTAAGGATGGTGT  788

seq1  TAACAAGTGGGAGGTTTCCTATAGGCCATCACTACCCTGAAGCAATTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTGGGAGGTTTCCTATAGGCCATCACTACCCTGAAGCAATTGTT  838

seq1  CTCTGTCATCATCTGTATGATTTTTCATCTTTAGTGTGTGTTAGATTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCATCATCTGTATGATTTTTCATCTTTAGTGTGTGTTAGATTTCC  888

seq1  CCATATTTGCAAGCAATAAGATTATATACATTAACTTGGCTTGCTGATTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTGCAAGCAATAAGATTATATACATTAACTTGGCTTGCTGATTC  938

seq1  ACATTATTATCTGATAGCTGACACTGTCATTGCTATGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTATCTGATAGCTGACACTGTCATTGCTATGAATTC  980