BAC Information

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BAC

Clone NameB6Ng01-264L01
Chromosome18 (Build37)X (Build37)
Map Location 15,237,247 - 15,238,23419,688,057 - 19,688,095
singlet/doubletsingletsinglet
Overlap geneKctd1
Upstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, EG622268
Downstream geneLOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228, LOC100040202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264L01.bB6Ng01-264L01.g
ACCGA068528GA068529
length990856
definitionB6Ng01-264L01.b B6Ng01-264L01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,237,247 - 15,238,234)(19,688,057 - 19,688,095)
sequence
gaattctttaatatttgagaaagaacgcaattctgttgtttccggatgat
gaggttgaaacccagaaagttcaattagcctaaagtcagaagtctcattg
gtaaagtgctcagagtccaagtcttctagtggggatttctgcactaaatt
tcttaccagccacagtctagaaccagctctttgcgatggctcttagatca
ggcctatcttcatctctgctctttctcagcatccttctcagcatgtattt
tcctgcatgctttcacaacgttaatggtctcagaaccagttttctctgtg
tcttcagtacgtccttgattcgatccttacattagcctaaccaagacccc
ttctgtacccatgaagcgcctttgccttactccatggtcttttaaactct
ccttgtttgacaggagcttagttgctttactacccagagtatgattgaca
tcatgtgcttatactggcctttgctcagtactatagacaaggttcttcag
tgacagccaagttccaagccaattggtaaacttcccttcactttccatat
aagtttggtctgcaggtggctgagaccagccttggtgccagttccgtatg
ttctcctaactatcgactattgatatctgatttactcagactcttagaca
atacgatcatcatcattatatactttatatgctgtgtgtctttctagcta
aaattaatttccagtagatggtgttctgtttgaagggagagggtgaagac
caagttttaaaaagatctttctgaccctaggtaaactcaaagtcacctgt
tcttcaagaataatcttcacccctgcttccccctcaacaattaatctaac
agctccatcgtcatcgtcactgtcataagaatccaggcaacgtgtgcctc
cctcctccctgtgtgagccccaaatgctttttgcaaggagaatttgacag
cctgaatagaagagtgttactggggggtggggaggagagc

gaattctaaaaagtctttaatttcttttttacttcttccttgaccaagtt
atcattgaggagagtgttgttcagcttccatgtcaacattggctttttat
tatttatgttgttattgaagatcagtcttagttcatggtgatctgctagg
atgaatgggattatttcaatattcttgtgtctgttaaggcctattttgtg
actgattatatggtcagttttggagaaggtaccatgatgaatgtgaagaa
tgtgtattcttttgttttaggatgaaatgttctatagatatcttttaaat
ccatatggtctaaaacttccgttagtttcactgtgtctctgtttagtttg
tgtttccctgatagatgaaagtggggcgttgaagtcccccataaatattg
tgtgaggtgaaatgtgtgtttttatctttagtaaggtttctttcatgaat
gtgggcaaccttgcatttggagcatagatgttcagaattaaaagttctgc
ttggtagatttttttctttgatgagtatgaagtgtccttccttatctttt
ttttgataagttttggttgaaagtaaattttatttgatattagaatgccc
attccagcttgttttttggttccatttgcttggaaatttgtttttcagcc
tttccctctgatgtagcatctgtctttgtcactgaggtgggtttcctgta
tgcagcaaaatgttgggtcctcttttatgaatacagtctgttggtctatg
tcttcttattggggaattgaatccattgatgttaagagatattaaagtaa
tagttgattgttgcttcctgttatttttgttgttagaggtagaattatgt
tttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_15237247_15238234
seq2: B6Ng01-264L01.b_43_1032 (reverse)

seq1  GCTCTCCTCCC--ACCCCCAGTAACACTCTTCTATTCAGGCTGTCAAATT  48
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCCCACCCCCCAGTAACACTCTTCTATTCAGGCTGTCAAATT  50

seq1  CTCCTTGCAAAAAGCATTTGGGGCTCACACAGGGAGGAGGGAGGCACACG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCAAAAAGCATTTGGGGCTCACACAGGGAGGAGGGAGGCACACG  100

seq1  TTGCCTGGATTCTTATGACAGTGACGATGACGATGGAGCTGTTAGATTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGGATTCTTATGACAGTGACGATGACGATGGAGCTGTTAGATTAA  150

seq1  TTGTTGAGGGGGAAGCAGGGGTGAAGATTATTCTTGAAGAACAGGTGACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAGGGGGAAGCAGGGGTGAAGATTATTCTTGAAGAACAGGTGACT  200

seq1  TTGAGTTTACCTAGGGTCAGAAAGATCTTTTTAAAACTTGGTCTTCACCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTACCTAGGGTCAGAAAGATCTTTTTAAAACTTGGTCTTCACCC  250

seq1  TCTCCCTTCAAACAGAACACCATCTACTGGAAATTAATTTTAGCTAGAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCAAACAGAACACCATCTACTGGAAATTAATTTTAGCTAGAAA  300

seq1  GACACACAGCATATAAAGTATATAATGATGATGATCGTATTGTCTAAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGCATATAAAGTATATAATGATGATGATCGTATTGTCTAAGAG  350

seq1  TCTGAGTAAATCAGATATCAATAGTCGATAGTTAGGAGAACATACGGAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTAAATCAGATATCAATAGTCGATAGTTAGGAGAACATACGGAAC  400

seq1  TGGCACCAAGGCTGGTCTCAGCCACCTGCAGACCAAACTTATATGGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCAAGGCTGGTCTCAGCCACCTGCAGACCAAACTTATATGGAAAG  450

seq1  TGAAGGGAAGTTTACCAATTGGCTTGGAACTTGGCTGTCACTGAAGAACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGTTTACCAATTGGCTTGGAACTTGGCTGTCACTGAAGAACC  500

seq1  TTGTCTATAGTACTGAGCAAAGGCCAGTATAAGCACATGATGTCAATCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATAGTACTGAGCAAAGGCCAGTATAAGCACATGATGTCAATCAT  550

seq1  ACTCTGGGTAGTAAAGCAACTAAGCTCCTGTCAAACAAGGAGAGTTTAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGTAGTAAAGCAACTAAGCTCCTGTCAAACAAGGAGAGTTTAAA  600

seq1  AGACCATGGAGTAAGGCAAAGGCGCTTCATGGGTACAGAAGGGGTCTTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGGAGTAAGGCAAAGGCGCTTCATGGGTACAGAAGGGGTCTTGG  650

seq1  TTAGGCTAATGTAAGGATCGAATCAAGGACGTACTGAAGACACAGAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTAATGTAAGGATCGAATCAAGGACGTACTGAAGACACAGAGAAA  700

seq1  ACTGGTTCTGAGACCATTAACGTTGTGAAAGCATGCAGGAAAATACATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCTGAGACCATTAACGTTGTGAAAGCATGCAGGAAAATACATGC  750

seq1  TGAGAAGGATGCTGAGAAAGAGCAGAGATGAAGATAGGCCTGATCTAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGATGCTGAGAAAGAGCAGAGATGAAGATAGGCCTGATCTAAGA  800

seq1  GCCATCGCAAAGAGCTGGTTCTAGACTGTGGCTGGTAAGAAATTTAGTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCGCAAAGAGCTGGTTCTAGACTGTGGCTGGTAAGAAATTTAGTGC  850

seq1  AGAAATCCCCACTAGAAGACTTGGACTCTGAGCACTTTACCAATGAGACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCCCACTAGAAGACTTGGACTCTGAGCACTTTACCAATGAGACT  900

seq1  TCTGACTTTAGGCTAATTGAACTTTCTGGGTTTCAACCTCATCATCCGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTAGGCTAATTGAACTTTCTGGGTTTCAACCTCATCATCCGGA  950

seq1  AACAACAGAATTGCGTTCTTTCTCAAATATTAAAGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGAATTGCGTTCTTTCTCAAATATTAAAGAATTC  990


seq1: chrX_19688057_19688095
seq2: B6Ng01-264L01.g_882_919 (reverse)

seq1  CACACAAACATAATTCCACCTCTAACAACAAAAATAACA  39
      |||| ||||||||||| ||||||||||||||||||||||
seq2  CACA-AAACATAATTCTACCTCTAACAACAAAAATAACA  38


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