BAC Information

Click to search

BAC

Clone NameB6Ng01-266A06
Chromosome18 (Build37)
Map Location 51,703,036 - 51,734,125
singlet/doubletdoublet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266A06.bB6Ng01-266A06.g
ACCGA069517GA069518
length8831,112
definitionB6Ng01-266A06.b B6Ng01-266A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,733,243 - 51,734,125)(51,703,036 - 51,703,920)
sequence
gaattctttgtaaaactaatagagctatgtagagaaaatccagttgccta
gatcacagatgtgggaaagttacccctggttggcttgcatcctctgattt
atttcaccaatgatcaaagcagctctgccccctgtcttaataagtgagca
acatgtaaagatttccaactatgttttgaatgaaaatttttgtcaatgaa
agtcatttgtgtttttatgcttaattaaaccccctattaaaatatttctg
gcttgttaaagatctgttcttcaccctttgagagagatagccaccagaat
cattatgacatagaatatcaggcttgggtttggacatcaagccatgaatc
gttgcctttggcttctacttggaaagcaaattatcttgctgtgttttatt
attatacaatggccaccatgtgatgtgttggactgatcccttgtccctat
tatatcagaaaagatatactgtcttaagtgccatcattcatctcaaatgg
tgcaaaaaaaaggccacttaaagtatattcaggggatctttataataatt
atgatcttagaaatgggtaagacttgcccttggcataagttttctcaata
agtatagtaaacactctaaaaatagaaagtacttatattttcaagtaaca
ttaagtcgaattctattaaagactaaatattgatggaaaacatagatgtg
gtagagtagacatcatgtgcagagactggtttcaagcatattgatgaagg
gaaggcttgtagacatgccctctccctacattatcattttttccagaatt
ccatatcgcataagaaagtagcagtgtgtctttcagattttgtaacacta
cactatgtgtatgggtgtgtgtgtgtgtgtgtg

gaattctttcttttgctttgtaccccatgtttaatagggttagttggttc
tctggagtctaacttcttgagttctttgtatgtacaggcaggtaggtaag
aggaatagaatttaagactcagaaatgaacccacgtaactacagtcactt
gatctttgacaaaggagctaataccatccagtggaaagaagacagcattt
tcaacaaatggtgctggttcagctggtgattagcaagcagaagaatgcaa
atcaatccattctttttccttttacaaaactaaaatccaagtggatcaag
gaactccacataaaaccagatactctggaactagaaaagaaattggagaa
tagcctcaagcacgtgagcacaggagaaaatttcctttacaaaacaatag
cctatgttctaagatcaagaattgacaaacgggaccttataaaattacaa
agcttctgtaaggcaaaggacactgtcaataggacaaaacagcaagcaac
aaattgggaaaagatctttagaactttttaaaaaatattatgtatgcctg
gttctgtatgtgtgtatgtgcatgtgagttcatatgtctacagaggcccg
aagggggtatcacatactctggagctgtagatacaaagtgttgtaagaaa
cctatagtaggtgctgagacaaaacttttgttctttataagagaaataca
ttttcttgactactaagccatccatctctttcttatatcttctattacta
aattatcttttatacaatgttgcacaatgttggataaagcatatcaactt
actaaataggatctcaggtacagataagtttcttttttatcaaatcaatc
tttgccactttgatttgaagacatttcattatatttagtgttgttaacat
tttatgtttgctttatgattcccactttataagtgggacccaaaatatat
cagatttttcattctctatattttagggttcaatttaggtttccttattc
ttttctttattaaaaatatattttttcagacaatatattttgattacaca
tttccctccaccatcttatcaaatcttccctactctctcgaatatattac
cacccacatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_51733243_51734125
seq2: B6Ng01-266A06.b_49_931 (reverse)

seq1  CACACACACACACACACACCCATACACATAGTGTAGTGTTACAAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCCATACACATAGTGTAGTGTTACAAAATCTG  50

seq1  AAAGACACACTGCTACTTTCTTATGCGATATGGAATTCTGGAAAAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACACTGCTACTTTCTTATGCGATATGGAATTCTGGAAAAAATGA  100

seq1  TAATGTAGGGAGAGGGCATGTCTACAAGCCTTCCCTTCATCAATATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGGGAGAGGGCATGTCTACAAGCCTTCCCTTCATCAATATGCTT  150

seq1  GAAACCAGTCTCTGCACATGATGTCTACTCTACCACATCTATGTTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGTCTCTGCACATGATGTCTACTCTACCACATCTATGTTTTCCA  200

seq1  TCAATATTTAGTCTTTAATAGAATTCGACTTAATGTTACTTGAAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTAGTCTTTAATAGAATTCGACTTAATGTTACTTGAAAATATA  250

seq1  AGTACTTTCTATTTTTAGAGTGTTTACTATACTTATTGAGAAAACTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTCTATTTTTAGAGTGTTTACTATACTTATTGAGAAAACTTATG  300

seq1  CCAAGGGCAAGTCTTACCCATTTCTAAGATCATAATTATTATAAAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGCAAGTCTTACCCATTTCTAAGATCATAATTATTATAAAGATCC  350

seq1  CCTGAATATACTTTAAGTGGCCTTTTTTTTGCACCATTTGAGATGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATATACTTTAAGTGGCCTTTTTTTTGCACCATTTGAGATGAATGA  400

seq1  TGGCACTTAAGACAGTATATCTTTTCTGATATAATAGGGACAAGGGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTAAGACAGTATATCTTTTCTGATATAATAGGGACAAGGGATCA  450

seq1  GTCCAACACATCACATGGTGGCCATTGTATAATAATAAAACACAGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACACATCACATGGTGGCCATTGTATAATAATAAAACACAGCAAGA  500

seq1  TAATTTGCTTTCCAAGTAGAAGCCAAAGGCAACGATTCATGGCTTGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGCTTTCCAAGTAGAAGCCAAAGGCAACGATTCATGGCTTGATGT  550

seq1  CCAAACCCAAGCCTGATATTCTATGTCATAATGATTCTGGTGGCTATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCAAGCCTGATATTCTATGTCATAATGATTCTGGTGGCTATCTC  600

seq1  TCTCAAAGGGTGAAGAACAGATCTTTAACAAGCCAGAAATATTTTAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGGGTGAAGAACAGATCTTTAACAAGCCAGAAATATTTTAATAG  650

seq1  GGGGTTTAATTAAGCATAAAAACACAAATGACTTTCATTGACAAAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTAATTAAGCATAAAAACACAAATGACTTTCATTGACAAAAATTT  700

seq1  TCATTCAAAACATAGTTGGAAATCTTTACATGTTGCTCACTTATTAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAAACATAGTTGGAAATCTTTACATGTTGCTCACTTATTAAGAC  750

seq1  AGGGGGCAGAGCTGCTTTGATCATTGGTGAAATAAATCAGAGGATGCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCAGAGCTGCTTTGATCATTGGTGAAATAAATCAGAGGATGCAAG  800

seq1  CCAACCAGGGGTAACTTTCCCACATCTGTGATCTAGGCAACTGGATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGGGGTAACTTTCCCACATCTGTGATCTAGGCAACTGGATTTTC  850

seq1  TCTACATAGCTCTATTAGTTTTACAAAGAATTC  883
      |||||||||||||||||||||||||||||||||
seq2  TCTACATAGCTCTATTAGTTTTACAAAGAATTC  883


seq1: chr18_51703036_51703920
seq2: B6Ng01-266A06.g_296_1177

seq1  TAGCAAGCAGAAGAATGCAAATCAATCCATTCTTTTTCCTTTTACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGCAGAAGAATGCAAATCAATCCATTCTTTTTCCTTTTACAAAAC  50

seq1  TAAAATCCAAGTGGATCAAGGAACTCCACATAAAACCAGATACTCTGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCAAGTGGATCAAGGAACTCCACATAAAACCAGATACTCTGGAA  100

seq1  CTAGAAAAGAAATTGGAGAATAGCCTCAAGCACGTGAGCACAGGAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAGAAATTGGAGAATAGCCTCAAGCACGTGAGCACAGGAGAAAA  150

seq1  TTTCCTTTACAAAACAATAGCCTATGTTCTAAGATCAAGAATTGACAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTACAAAACAATAGCCTATGTTCTAAGATCAAGAATTGACAAAC  200

seq1  GGGACCTTATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTTATAAAATTACAAAGCTTCTGTAAGGCAAAGGACACTGTCAAT  250

seq1  AGGACAAAACAGCAAGCAACAAATTGGGAAAAGATCTTTAGAACTTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAACAGCAAGCAACAAATTGGGAAAAGATCTTTAGAACTTTTTA  300

seq1  AAAAATATTATGTATGCCTGGTTCTGTATGTGTGTATGTGCATGTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTATGTATGCCTGGTTCTGTATGTGTGTATGTGCATGTGAGTT  350

seq1  CATATGTCTACAGAGGCCCGAAGGGGGTATCACATACTCTGGAGCTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCTACAGAGGCCCGAAGGGGGTATCACATACTCTGGAGCTGTAG  400

seq1  ATACAAAGTGTTGTAAGAAACCTATAGTAGGTGCTGAGACAAAACTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGTGTTGTAAGAAACCTATAGTAGGTGCTGAGACAAAACTTTTG  450

seq1  TTCTTTATAAGAGAAATACATTTTCTTGACTACTAAGCCATCCATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAAGAGAAATACATTTTCTTGACTACTAAGCCATCCATCTCTT  500

seq1  TCTTATATCTTCTATTACTAAATTATCTTTTATACAATGTTGCACAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATATCTTCTATTACTAAATTATCTTTTATACAATGTTGCACAATGT  550

seq1  TGGATAAAGCATATCAACTTACTAAATAGGATCTCAGGTACAGATAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAAGCATATCAACTTACTAAATAGGATCTCAGGTACAGATAAGTT  600

seq1  TCTTTTTTATCAAATCAATCTTTGCCACTTTGATTTGAAGACATTTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATCAAATCAATCTTTGCCACTTTGATTTGAAGACATTTCATT  650

seq1  ATATTTAGTGTTGTTAACATTTTATGTTTGCTTTATGATTCCCACTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGTGTTGTTAACATTTTATGTTTGCTTTATGATTCCCACTTTAT  700

seq1  AAGTGGGACCCAAAATATATCAGATTTTTCATTCTCTATATTTTAGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGACCCAAAATATATCAGATTTTTCATTCTCTATATTTTAGGGTT  750

seq1  CAA-TTAGGTTTCCTTATTCTTTTCTTTTATTAAAAATATA-TTTTTCAG  798
      ||| ||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  CAATTTAGGTTTCCTTATTCTTTTC-TTTATTAAAAATATATTTTTTCAG  799

seq1  ACAATATATTTTGATTACACATTTCCCTCCACCATCTTATTCAAAATCTT  848
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  ACAATATATTTTGATTACACATTTCCCTCCACCATCTTAT--CAAATCTT  847

seq1  CCCTACTCTCCTCCGGAATATA-TACCACCCACATCTT  885
      ||||||||| |||  ||||||| |||||||||||||||
seq2  CCCTACTCT-CTC--GAATATATTACCACCCACATCTT  882


| Home | SequenceCutter | Blast | Download |