BAC Information

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BAC

Clone NameB6Ng01-267F09
Chromosome18 (Build37)
Map Location 36,082,283 - 36,238,499
singlet/doubletdoublet
Overlap genePsd2, LOC100042150
Upstream geneEtf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131
Downstream geneLOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267F09.bB6Ng01-267F09.g
ACCGA070485GA070486
length1,093951
definitionB6Ng01-267F09.b B6Ng01-267F09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,237,424 - 36,238,499)(36,082,283 - 36,083,230)
sequence
gaattctctagggccagttcttttttttttttttctttttttcaattaat
taattactttacttattcactttacatccagctcactgctagggccagtt
ctttttcagaagatatttcatatactatctgcatcagtagaaataaatac
catgttccaacctcacccaagagactgtaattcagaactttctggatggg
gttaatattccacccatacagcaagcactccaagtaaggcagtagcttat
gactgcaactcagcccccgtgatgacacagtccccctgttttcttatcat
gagcttcacagatggccaccccctacccgcccccccacaccccacgtctc
acagccttatctcccatggggcccttcacacgacttttatattaatcaag
ataaaaatctttatggtctgaacttaccccttagttcccactcttgctag
gttatcccatgctccaggagaaagtcccctatagcacggcatctgtgttt
gtgaagcagatctcacctccatcctttcattttaaccagcccattatctg
gagctgaccacccacgcctttcataatctaaaacgctacgtatccctgct
gcttgctcatgagccagcgaggctcacacgtgttcgaagagcatgcctgt
gggtgaggtggcccatcctggtacgtgtctactgtacagtaattgagtgg
gtcacacttcagcggggccttcagtgcacagggtacagggtggcagtcag
tttcttctgaggaggtcagggtcctccctgggggacccgaagatctgggg
cctacatcagatagcactggaatttcagacagggacctggggggccctgg
ccaccactgagcttgtcgtgccctgacagtgccactggcgccagctcttc
tcggagcctttgcaactgctgagctgaatcctttgttccaactggtgacc
ccggacaggaaagggccttgaccacctcattgtcctcgctcactaaatca
accctgacttccgcagcagggagaaggagggcgagaaagggcattcacca
ggccctatttgttatgagcttctttaaaattaaaccgatgatt
gaattccaagccagcccggactacatagcaacacggcaagaacatttctt
tacagaacaaaacaaagctgggtgtggtagcacatgcctttagtcctagc
actgaggagtcagatgcaggtggatctgagttcaaggccagcctagtcta
cagtgttctaggtcagccagagttacacatcagccagagttacacagaga
gaccttgtctcaaaaaccaaacccaacaaaaatctctcaatggatcttcc
ctattttagcagcggggaactgaggattaacaagagaaaacatggatacc
tttcctggggagggcagtgctggccacctgcatccttctgcattagcctg
tgtcttcatggactggaggccctgcccccagctctgtcccagcctgctcc
tcccactcccctttcctagtctcaggagggacacagttcatgtattgtga
cctttctccccgaccccccagagggcatgaccttttcccatagccccaac
atcaaaggagaggcagctccttcgttctctgcatctcctgcctgaaatgg
ttccagatgtgaggctttgccagaaagcagggtgaggatggtcttccttc
aggagctgccctggagagaggcccaggatccccatgcccacttccctgca
agtgctccctgtctaggagcagaacatggtcactgagggcattgtggtta
gcgaataacttctgaagagtctgaggaaggagaaccccctttcaggccta
agtgtctggaacaggagagatggaggctatagctctccctaggtttgcaa
tttactctgaatggaggacagacttctggatctgggatgtaagagccaca
actaatgttagcgtttgttctttctaaaaatattacagtttttttccttt
cccctttcctttccttttccttcccttcccttccctttcccttcccttac
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_36237424_36238499
seq2: B6Ng01-267F09.b_44_1136 (reverse)

seq1  AATCATC-GTTTAATTTTTAAG-AGCTCATTAACAAATAGG--CT-GTGA  45
      ||||||| |||||||||| ||| |||||| |||||||||||  || ||||
seq2  AATCATCGGTTTAATTTTAAAGAAGCTCA-TAACAAATAGGGCCTGGTGA  49

seq1  ATG-CCTTTCTCG-CCTCC-TCT-CCTGCTGCGG-AGTCAGGG-TGATTT  89
      ||| ||||||||| ||||| ||| |||||||||| |||||||| ||||||
seq2  ATGCCCTTTCTCGCCCTCCTTCTCCCTGCTGCGGAAGTCAGGGTTGATTT  99

seq1  AGTGAGCGAGGACAATGAGGTGGTCAAGGCC--TTTCTGTCCGGGGTCAC  137
      |||||||||||||||||||||||||||||||  || ||||||||||||||
seq2  AGTGAGCGAGGACAATGAGGTGGTCAAGGCCCTTTCCTGTCCGGGGTCAC  149

seq1  CAGTTGGAAC-AAGGATTCAGCTCAGCAGTTGC-AAGGCTCCGAGAAGAG  185
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CAGTTGGAACAAAGGATTCAGCTCAGCAGTTGCAAAGGCTCCGAGAAGAG  199

seq1  CTGGCGCCAGTGGCACTGTCAGGGCACGACAAGCTCAGTGGTGGCCAGGG  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCAGTGGCACTGTCAGGGCACGACAAGCTCAGTGGTGGCCAGGG  249

seq1  CCCCCCAGGT-CCTGTCTG-AATTCCAGTGCTATCTGATGTAGGCCCCAG  283
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  CCCCCCAGGTCCCTGTCTGAAATTCCAGTGCTATCTGATGTAGGCCCCAG  299

seq1  ATCTTCGGGT-CCCCAGGGAGGACCCTGACCTCCTCAGAAGAAACTGACT  332
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCGGGTCCCCCAGGGAGGACCCTGACCTCCTCAGAAGAAACTGACT  349

seq1  GCCACCCTGTACCCTGTGCACTGAAGGCCCCGCTGAAGTGTGACCCACTC  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTGTACCCTGTGCACTGAAGGCCCCGCTGAAGTGTGACCCACTC  399

seq1  AATTACTGTACAGTAGACACGTACCAGGATGGGCCACCTCACCCACAGGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGTACAGTAGACACGTACCAGGATGGGCCACCTCACCCACAGGC  449

seq1  ATGCTCTTCGAACACGTGTGAGCCTCGCTGGCTCATGAGCAAGCAGCAGG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTCGAACACGTGTGAGCCTCGCTGGCTCATGAGCAAGCAGCAGG  499

seq1  GATACGTAGCGTTTTAGATTATGAAAGGCGTGGGTGGTCAGCTCCAGATA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACGTAGCGTTTTAGATTATGAAAGGCGTGGGTGGTCAGCTCCAGATA  549

seq1  ATGGGCTGGTTAAAATGAAAGGATGGAGGTGAGATCTGCTTCACAAACAC  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGGTTAAAATGAAAGGATGGAGGTGAGATCTGCTTCACAAACAC  599

seq1  AGATGCCGTGCTATAGGGGACTTTCTCCTGGAGCATGGGATAACCTAGCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCGTGCTATAGGGGACTTTCTCCTGGAGCATGGGATAACCTAGCA  649

seq1  AGAGTGGGAACTAAGGGGTAAGTTCAGACCATAAAGATTTTTATCTTGAT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGAACTAAGGGGTAAGTTCAGACCATAAAGATTTTTATCTTGAT  699

seq1  TAATATAAAAGTCGTGTGAAGGGCCCCATGGGAGATAAGGCTGTGAGACG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAAAGTCGTGTGAAGGGCCCCATGGGAGATAAGGCTGTGAGACG  749

seq1  TGGGGTGTGGGGGGGCGGGTAGGGGGTGGCCATCTGTGAAGCTCATGATA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGGGGGGGCGGGTAGGGGGTGGCCATCTGTGAAGCTCATGATA  799

seq1  AGAAAACAGGGGGACTGTGTCATCACGGGGGCTGAGTTGCAGTCATAAGC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGGGGGACTGTGTCATCACGGGGGCTGAGTTGCAGTCATAAGC  849

seq1  TACTGCCTTACTTGGAGTGCTTGCTGTATGGGTGGAATATTAACCCCATC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTTACTTGGAGTGCTTGCTGTATGGGTGGAATATTAACCCCATC  899

seq1  CAGAAAGTTCTGAATTACAGTCTCTTGGGTGAGGTTGGAACATGGTATTT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTCTGAATTACAGTCTCTTGGGTGAGGTTGGAACATGGTATTT  949

seq1  ATTTCTACTGATGCAGATAGTATATGAAATATCTTCTGAAAAAGAACTGG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTACTGATGCAGATAGTATATGAAATATCTTCTGAAAAAGAACTGG  999

seq1  CCCTAGCAGTGAGCTGGATGTAAAGTGAATAAGTAAAGTAATTAATTAAT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGCAGTGAGCTGGATGTAAAGTGAATAAGTAAAGTAATTAATTAAT  1049

seq1  TGAAAAAAAGAAAAAAAAAAAAAAGAACTGGCCCTAGAGAATTC  1076
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAGAAAAAAAAAAAAAAGAACTGGCCCTAGAGAATTC  1093

seq1: chr18_36082283_36083230
seq2: B6Ng01-267F09.g_69_1019

seq1  GAATTCCAAGCCAGCCCGGACTACATAGCAACACGGCAAGAACATTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCAGCCCGGACTACATAGCAACACGGCAAGAACATTTCTT  50

seq1  TACAGAACAAAACAAAGCTGGGTGTGGTAGCACATGCCTTTAGTCCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACAAAACAAAGCTGGGTGTGGTAGCACATGCCTTTAGTCCTAGC  100

seq1  ACTGAGGAGTCAGATGCAGGTGGATCTGAGTTCAAGGCCAGCCTAGTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAGTCAGATGCAGGTGGATCTGAGTTCAAGGCCAGCCTAGTCTA  150

seq1  CAGTGTTCTAGGTCAGCCAGAGTTACACATCAGCCAGAGTTACACAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTAGGTCAGCCAGAGTTACACATCAGCCAGAGTTACACAGAGA  200

seq1  GACCTTGTCTCAAAAACCAAACCCAACAAAAATCTCTCAATGGATCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTCTCAAAAACCAAACCCAACAAAAATCTCTCAATGGATCTTCC  250

seq1  CTATTTTAGCAGCGGGGAACTGAGGATTAACAAGAGAAAACATGGATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGCAGCGGGGAACTGAGGATTAACAAGAGAAAACATGGATACC  300

seq1  TTTCCTGGGGAGGGCAGTGCTGGCCACCTGCATCCTTCTGCATTAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGGGAGGGCAGTGCTGGCCACCTGCATCCTTCTGCATTAGCCTG  350

seq1  TGTCTTCATGGACTGGAGGCCCTGCCCCCAGCTCTGTCCCAGCCTGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATGGACTGGAGGCCCTGCCCCCAGCTCTGTCCCAGCCTGCTCC  400

seq1  TCCCACTCCCCTTTCCTAGTCTCAGGAGGGACACAGTTCATGTATTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCCCCTTTCCTAGTCTCAGGAGGGACACAGTTCATGTATTGTGA  450

seq1  CCTTTCTCCCCGACCCCCCAGAGGGCATGACCTTTTCCCATAGCCCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCCCGACCCCCCAGAGGGCATGACCTTTTCCCATAGCCCCAAC  500

seq1  ATCAAAGGAGAGGCAGCTCCTTCGTTCTCTGCATCTCCTGCCTGAAATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGAGAGGCAGCTCCTTCGTTCTCTGCATCTCCTGCCTGAAATGG  550

seq1  TTCCAGATGTGAGGCTTTGCCAGAAAGCAGGGTGAGGATGGTCTTCCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATGTGAGGCTTTGCCAGAAAGCAGGGTGAGGATGGTCTTCCTTC  600

seq1  AGGAGCTGCCCTGGAGAGAGGCCCAGGATCCCCATGCCCACTTCCCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGCCCTGGAGAGAGGCCCAGGATCCCCATGCCCACTTCCCTGCA  650

seq1  AGTGCTCCCTGTCTAGGAGCAGAACATGGTCACTGAGGGCATTGTGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCCTGTCTAGGAGCAGAACATGGTCACTGAGGGCATTGTGGTTA  700

seq1  GCGAATAACTTCTGAAGAGTCTGAGGAAGGAGAA-CCCCTTTCAGGCCTA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCGAATAACTTCTGAAGAGTCTGAGGAAGGAGAACCCCCTTTCAGGCCTA  750

seq1  AGTGTCTGGAACAGGAGAGATGGAGGCTATAGCTCTCCCTAGGTTTGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGAACAGGAGAGATGGAGGCTATAGCTCTCCCTAGGTTTGCAA  800

seq1  TTTACTCTGAATGGAGGACAGACTTCTGGATCTGGGATGTAAGAGCCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCTGAATGGAGGACAGACTTCTGGATCTGGGATGTAAGAGCCACA  850

seq1  ACTAAGGTTAGCGTTTGTTCTTTCTAAAAAATATTTACAG-TTTTTTCCT  898
      ||||| ||||||||||||||||||| ||||||| |||||| |||||||||
seq2  ACTAATGTTAGCGTTTGTTCTTTCT-AAAAATA-TTACAGTTTTTTTCCT  898

seq1  TT-CCCTTTCCTTTCC-TTTCCTTCCCTTCCCTTCCC-TTCCCTTCCCTT  945
      || ||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TTCCCCTTTCCTTTCCTTTTCCTTCCCTTCCCTTCCCTTTCCCTTCCCTT  948

seq1  CCC  948
       ||
seq2  ACC  951