BAC Information

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BAC

Clone NameB6Ng01-268M22
Chromosome18 (Build37)
Map Location 68,323,548 - 68,468,252
singlet/doubletdoublet
Overlap geneD18Ertd653e, 4933403F05Rik, Rnmt
Upstream geneGnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939
Downstream geneMc5r, Mc2r, LOC100043380, EG225681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268M22.bB6Ng01-268M22.g
ACCGA071569GA071570
length1,151344
definitionB6Ng01-268M22.b B6Ng01-268M22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,467,084 - 68,468,252)(68,323,548 - 68,323,891)
sequence
gaattcctattaaactttattcatatgaattacaatcagacaaaaaggaa
taaacaacaaaaaccctccactataaaaaaaccttaagatatacccttaa
aatttctctaaacttacagacaagtctgatttcactagcagagaaagcaa
taattacattctaaatcctattttctctactcatttccattttaatttta
aaggtgagttttcatagagaaaacattagttccaaaactgtctgtcctta
tcagtcctcaaaggtaaacattttcctcaagaaatcatagaagacagaca
gacagacagacaagctctgtgaccaacaccaactccgggaaagcacacag
gtagagtcctaacgctgtccttttcttgacataataaaaactcaatgctc
aatccaacatgcacatcgctaaaactattatgtaatagccttgagttgtt
actaaaagtataaaggcatttcactgccacgtgaaaggctgttaagtcaa
tagcaactaaacattataaatgccccatacaatgaactaaaaacaaatag
taaaacaatttctcccaagggaatacttctggctttctagcgttttaaaa
ccgaagtgtgacaacaaagggaagagtcaatgatggtgttcaaagcctga
catatgattaaaactgggagagaggacccaaagcaggacatgggctgtgg
ctacagtgtagctgcccagcactttcaatgtgtgcacccttaggtgcggt
gaaaagcgatgtaccccaataaaaatttatctcccaactaaagggcaaaa
accggtcgtaccaatcagaatacttttaatccaattattgaagtttctta
ggtaaaaaatgcgactttgactacgcttcgccaggccaacttcctgaagc
tcattatagtgggcagccacggctgagctgtgtccttcctccagcttctg
caactgcaaggaacagaattaggggttagagcacaatctggaaggaaggg
aaaagcctcagctcgctgacttccgttacagaccagcacgcacactcagc
gcaacggctggacccaccgcatatgagactgcctgatctttataaacgaa
ttcccagctcccagttaagtcagactgcacctcaccggtatcattacgac
t
caagccaaatgtgggatggaaaaatatcagaactgtgaggtttggggagg
aacgagtgtgaatgagtcggaaactgtggaaaagctggtgggggacaaag
cggtgaggattgataaaggggttagcacagttaaagaggctagcaaggtt
gacaaaactgtgtttaatggggggctaaactgaaaaataaaatgaggaca
tgaagtcggatgtgcgggaggataagggtgcattatatccaggagttagg
gtgactataaaagttttttccgtgcctttcacttttcagagagagtgagc
aggggagagggaggaaaggagaaagggagaggagagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68467084_68468252
seq2: B6Ng01-268M22.b_50_1200 (reverse)

seq1  AGTCGTAAATGATACGGGTGAGGGTCGCAGTCTGGACCTTAAACTGGGGA  50
      |||||| |||||||| |||||||   ||||||| |||  | |||| ||||
seq2  AGTCGT-AATGATACCGGTGAGG--TGCAGTCT-GAC--TTAACT-GGGA  43

seq1  GCTGGGGATTCGTTTTATAAAGAATCAGGGCAGTCCTTCATTATTGCGGT  100
      |||||| ||||| ||||||||| |||| |||||||  ||||   ||||||
seq2  GCTGGGAATTCG-TTTATAAAG-ATCA-GGCAGTC--TCAT--ATGCGGT  86

seq1  GGGTCCAGCCGTTGCGCCTGAGTTGTGCGTGCTTGGTCTGTAACGGAAGT  150
      |||||||||||||||| ||||| ||||||||| |||||||||||||||||
seq2  GGGTCCAGCCGTTGCG-CTGAG-TGTGCGTGC-TGGTCTGTAACGGAAGT  133

seq1  CAGGCGAGCTGAGGCTTTTCCTTCCCTTCCAGATTGTGCTCTAACCCCTA  200
      || |||||||||||||||||| | ||||||||||||||||||||||||||
seq2  CA-GCGAGCTGAGGCTTTTCCCTTCCTTCCAGATTGTGCTCTAACCCCTA  182

seq1  ATTCTGTTCCTTGCAGTTGCAGAAGCTGGAGGAAGGACACAGCTCAGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCCTTGCAGTTGCAGAAGCTGGAGGAAGGACACAGCTCAGCCG  232

seq1  TGGCTGCCCACTATAATGAGCTTCAGGAAGTTGGCCTGGCGAAGCGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCCACTATAATGAGCTTCAGGAAGTTGGCCTGGCGAAGCGTAGT  282

seq1  CAAAGTCGCATTTTTTACCTAAGAAACTTCAATAATTGGATTAAAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCGCATTTTTTACCTAAGAAACTTCAATAATTGGATTAAAAGTAT  332

seq1  TCTGATTGGTACGACCGGTTTTTGCCCTTTAGTTGGGAGATAAATTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGGTACGACCGGTTTTTGCCCTTTAGTTGGGAGATAAATTTTTA  382

seq1  TTGGGGTACATCGCTTTTCACCGCACCTAAGGGTGCACACATTGAAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTACATCGCTTTTCACCGCACCTAAGGGTGCACACATTGAAAGTG  432

seq1  CTGGGCAGCTACACTGTAGCCACAGCCCATGTCCTGCTTTGGGTCCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCTACACTGTAGCCACAGCCCATGTCCTGCTTTGGGTCCTCTC  482

seq1  TCCCAGTTTTAATCATATGTCAGGCTTTGAACACCATCATTGACTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTTTAATCATATGTCAGGCTTTGAACACCATCATTGACTCTTCC  532

seq1  CTTTGTTGTCACACTTCGGTTTTAAAACGCTAGAAAGCCAGAAGTATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTGTCACACTTCGGTTTTAAAACGCTAGAAAGCCAGAAGTATTCC  582

seq1  CTTGGGAGAAATTGTTTTACTATTTGTTTTTAGTTCATTGTATGGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGAAATTGTTTTACTATTTGTTTTTAGTTCATTGTATGGGGCAT  632

seq1  TTATAATGTTTAGTTGCTATTGACTTAACAGCCTTTCACGTGGCAGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGTTTAGTTGCTATTGACTTAACAGCCTTTCACGTGGCAGTGAA  682

seq1  ATGCCTTTATACTTTTAGTAACAACTCAAGGCTATTACATAATAGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTATACTTTTAGTAACAACTCAAGGCTATTACATAATAGTTTTA  732

seq1  GCGATGTGCATGTTGGATTGAGCATTGAGTTTTTATTATGTCAAGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATGTGCATGTTGGATTGAGCATTGAGTTTTTATTATGTCAAGAAAAG  782

seq1  GACAGCGTTAGGACTCTACCTGTGTGCTTTCCCGGAGTTGGTGTTGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGTTAGGACTCTACCTGTGTGCTTTCCCGGAGTTGGTGTTGGTCA  832

seq1  CAGAGCTTGTCTGTCTGTCTGTCTGTCTTCTATGATTTCTTGAGGAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTGTCTGTCTGTCTGTCTGTCTTCTATGATTTCTTGAGGAAAAT  882

seq1  GTTTACCTTTGAGGACTGATAAGGACAGACAGTTTTGGAACTAATGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTTTGAGGACTGATAAGGACAGACAGTTTTGGAACTAATGTTTT  932

seq1  CTCTATGAAAACTCACCTTTAAAATTAAAATGGAAATGAGTAGAGAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGAAAACTCACCTTTAAAATTAAAATGGAAATGAGTAGAGAAAAT  982

seq1  AGGATTTAGAATGTAATTATTGCTTTCTCTGCTAGTGAAATCAGACTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTAGAATGTAATTATTGCTTTCTCTGCTAGTGAAATCAGACTTGT  1032

seq1  CTGTAAGTTTAGAGAAATTTTAAGGGTATATCTTAAGGTTTTTTTATAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTTTAGAGAAATTTTAAGGGTATATCTTAAGGTTTTTTTATAGT  1082

seq1  GGAGGGTTTTTGTTGTTTATTCCTTTTTGTCTGATTGTAATTCATATGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTTTTGTTGTTTATTCCTTTTTGTCTGATTGTAATTCATATGAA  1132

seq1  TAAAGTTTAATAGGAATTC  1169
      |||||||||||||||||||
seq2  TAAAGTTTAATAGGAATTC  1151

seq1: chr18_68323548_68323891
seq2: B6Ng01-268M22.g_72_415

seq1  CAAGCCAAATGTGGGATGGAAAAATATCAGAACTGTGAGGTTTGGGGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAATGTGGGATGGAAAAATATCAGAACTGTGAGGTTTGGGGAGG  50

seq1  AACGAGTGTGAATGAGTCGGAAACTGTGGAAAAGCTGGTGGGGGACAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTGTGAATGAGTCGGAAACTGTGGAAAAGCTGGTGGGGGACAAAG  100

seq1  CGGTGAGGATTGATAAAGGGGTTAGCACAGTTAAAGAGGCTAGCAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGGATTGATAAAGGGGTTAGCACAGTTAAAGAGGCTAGCAAGGTT  150

seq1  GACAAAACTGTGTTTAATGGGGGGCTAAACTGAAAAATAAAATGAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACTGTGTTTAATGGGGGGCTAAACTGAAAAATAAAATGAGGACA  200

seq1  TGAAGTCGGATGTGCGGGAGGATAAGGGTGCATTATATCCAGGAGTTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCGGATGTGCGGGAGGATAAGGGTGCATTATATCCAGGAGTTAGG  250

seq1  GTGACTATAAAAGTTTTTTCCGTGCCTTTCACTTTTCAGAGAGAGTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTATAAAAGTTTTTTCCGTGCCTTTCACTTTTCAGAGAGAGTGAGC  300

seq1  AGGGGAGAGGGAGGAAAGGAGAAAGGGAGAGGAGAGAGAGAGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGGGAGGAAAGGAGAAAGGGAGAGGAGAGAGAGAGAG  344