BAC Information

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BAC

Clone NameB6Ng01-268O17
Chromosome18 (Build37)
Map Location 57,932,131 - 58,115,386
singlet/doubletdoublet
Overlap geneSlc12a2, 9330166H04Rik
Upstream geneMarch3, C330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268O17.bB6Ng01-268O17.g
ACCGA071654GA071655
length8371,098
definitionB6Ng01-268O17.b B6Ng01-268O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,114,553 - 58,115,386)(57,932,131 - 57,933,140)
sequence
gaattcattctctctctctctctctctctctctctctctctctctctctc
tctctctctctctccttgtctaagccatgggccataggctttttaattga
tggatgatgcatccatacaatacgtgagatattctctacagggaagagat
ccgaattcagttaaacattaatgtttattaatgttaattaaacattaatg
tatgatttcttgcacacatatactatacatgaggtaaggtgcatgacgga
agacactcatagagtttgttgagggtgtattattatgtagtaatattcat
atagtacttgaagaagacccagggaataactgaagatgtgtccctgattt
ggaaaggcaacgggcttcctccttggctgacctacagaagttatttttcc
actttgtttaataatacccaaatatctgctcttgttgttcgagagtttgc
aggtgtacttttattttttttattatttctatttttattatatatcacaa
caaacatagttaaagtcacaatcaaaggacaatagtgatatgctcatttg
tgatgtgcaattattaataacctcacacagttttcagatctgatctttcc
agtgctagtgcagacagaagcacaaaaatctaattcctttatgtccaaag
aaaaaccgaaactttttagcatccaaagctaagggaaaattcttccatat
tattaaaaaaactaaaagttcttctagaacataaaacaaaatatcaagtc
atggtacaactgacataaataggcgattcaccacactgtttttgtatggt
tttagttgtatggaaacaaaataactctataagaaat
gaattcagacagactatctggaaagcagacaggacacagtgaagaaaaac
taactcttctctggggcctgagatatgaagaatggctgcaggtaactaga
acatcagagattataaccttctggtggtttctttattcaaatgtctggtg
ccttcagggaggaccagaatgctgggctgggataataagcagttccctgg
attcgagaatggaagacacacatgtgccagttaatttaaaaatgctttgg
ctaccacaaaggctgggcactcctaaactatcctgctatcccaggcctaa
tcagggaagtagctagtggccgcccatgtgaattatcatatggctagtta
gctttatctcctgcagttccttagttcatccatctcccactgattcatgg
tgattcctttccctccctcctgtgtcctagccccaagaaactcaagggtc
ctgctctgtctccctttgcccaatcattggccactggcatctttattgat
taagcaaaaaacaactggagacagggacctttagtgttcagactcactga
ttcccaattgaatcaaagcattagaatcaatctccaaaaacatacatgtg
atccatctctataccatgcagggctcactgcttggaatccccatactgag
aagaattctaaaaggcagcatccaagggaggagtgtttcaggaaaaccag
acacctgggaattgtagcatctgggggtgctcagttccctgctgcatcct
attgcacgagcgagtcattgaagccagattcaatggaagggatctcttgg
aggagtaacaagaagattgatgtagctcagtagtaaatgattgcccagca
agtatgcagtcctgagttcaattcccctgaaacacacatatacacccaaa
gaacaaatgaaataagagacgttattgtagcccatttgggggggggtgag
ccatgtttcatacaatatttcccacacaaataatattgtttagtctgctt
tctgttctgtggtaaaaacactgaaccaaaagttacttgtgatgaaaggt
ttgtttcatctacaggtacagttctacgactgaggtaggcccaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58114553_58115386
seq2: B6Ng01-268O17.b_48_884 (reverse)

seq1  ATTTCTTATAGAGTTATCTAGTTTCCATTACACTAAAACCATAC-AAAAC  49
      ||||||||||||||||| | ||||||||   ||||||||||||| |||||
seq2  ATTTCTTATAGAGTTATTTTGTTTCCATACAACTAAAACCATACAAAAAC  50

seq1  AGTGTGCTGAATCGCCTATTTATGTCATTTGTACCATGACTTGATATTTT  99
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTGTGGTGAATCGCCTATTTATGTCAGTTGTACCATGACTTGATATTTT  100

seq1  G-TTTATGTCTTAGAAGAACTTTTAGTTTTGTTAATAATCTGGAAGAA-T  147
      | |||||||  ||||||||||||||||||| |||||||| |||||||| |
seq2  GTTTTATGTTCTAGAAGAACTTTTAGTTTTTTTAATAATATGGAAGAATT  150

seq1  TTCCCTTAGCTTTGGATGCTAAAAAGTTTCGG-TTTTCCTTGGACATAAA  196
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TTCCCTTAGCTTTGGATGCTAAAAAGTTTCGGTTTTTCTTTGGACATAAA  200

seq1  GGAATTAGA-TTTTGTGCTTCTGTCTGCACTAGCACTGGGAAAGCTCAGA  245
      ||||||||| ||||||||||||||||||||||||||| |||||| |||||
seq2  GGAATTAGATTTTTGTGCTTCTGTCTGCACTAGCACT-GGAAAGATCAGA  249

seq1  TCTGAAAACTGTGTGAGGTTATTAATAATTGCACATCACAAATGAGCATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAACTGTGTGAGGTTATTAATAATTGCACATCACAAATGAGCATA  299

seq1  TCACTACTGTCCTTTGATTTTGACTTTAACTATGTTTGTTGTGATATATA  345
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TCACTATTGTCCTTTGATTGTGACTTTAACTATGTTTGTTGTGATATATA  349

seq1  ATAAAAATAGAAATAATAAAAAAAATAAAAGTACACCTGCAAACTCTCGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAGAAATAATAAAAAAAATAAAAGTACACCTGCAAACTCTCGA  399

seq1  ACAACAAGAGCAGATATTTGGGTATTATTAAACAAAGTGGAAAAATAACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAGCAGATATTTGGGTATTATTAAACAAAGTGGAAAAATAACT  449

seq1  TCTGTAGGTCAGCCAAGGAGGAAGCCCGTTGCCTTTCCAAATCAGGGACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGGTCAGCCAAGGAGGAAGCCCGTTGCCTTTCCAAATCAGGGACA  499

seq1  CATCTTCAGTTATTCCCTGGGTCTTCTTCAAGTACTATATGAATATTACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGTTATTCCCTGGGTCTTCTTCAAGTACTATATGAATATTACT  549

seq1  ACATAATAATATATATTTCAACAAACTCTATGAGTGTCTTCCGTCATGCA  595
      ||||||||||| |    |||||||||||||||||||||||||||||||||
seq2  ACATAATAATACA-CCCTCAACAAACTCTATGAGTGTCTTCCGTCATGCA  598

seq1  CCTTACCTCATGTATAGTATATGTGTGCAAGAAATCATACATTAATGTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTCATGTATAGTATATGTGTGCAAGAAATCATACATTAATGTTT  648

seq1  AATTAACATTAATAAACATTAATGTTTAATTGAATTCGGATCTCTTCCCT  695
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTAACATTAATAAACATTAATGTTTAACTGAATTCGGATCTCTTCCCT  698

seq1  GTAGAGAATATCTCACGTATTGTATGGATGCATCATCCATCAATTAAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAATATCTCACGTATTGTATGGATGCATCATCCATCAATTAAAAA  748

seq1  GCCTATGGCCCATGGCTTAGGCAAGGAGAGAGAGAGAGAGAGAGAGAGAG  795
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTATGGCCCATGGCTTAGACAAGGAGAGAGAGAGAGAGAGAGAGAGAG  798

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATTC  834
      |||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATTC  837

seq1: chr18_57932131_57933140
seq2: B6Ng01-268O17.g_155_1163

seq1  AGGTAACTAGAACATCAGAGATTATAACCTTCTGGTGGTTTCTTTATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAACTAGAACATCAGAGATTATAACCTTCTGGTGGTTTCTTTATTCA  50

seq1  AATGTCTGGTGCCTTCAGGGAGGACCAGAATGCTGGGCTGGGATAATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGGTGCCTTCAGGGAGGACCAGAATGCTGGGCTGGGATAATAAG  100

seq1  CAGTTCCCTGGATTCGAGAATGGAAGACACACATGTGCCAGTTAATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCTGGATTCGAGAATGGAAGACACACATGTGCCAGTTAATTTAA  150

seq1  AAATGCTTTGGCTACCACAAAGGCTGGGCACTCCTAAACTATCCTGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTGGCTACCACAAAGGCTGGGCACTCCTAAACTATCCTGCTAT  200

seq1  CCCAGGCCTAATCAGGGAAGTAGCTAGTGGCCGCCCATGTGAATTATCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCCTAATCAGGGAAGTAGCTAGTGGCCGCCCATGTGAATTATCAT  250

seq1  ATGGCTAGTTAGCTTTATCTCCTGCAGTTCCTTAGTTCATCCATCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAGTTAGCTTTATCTCCTGCAGTTCCTTAGTTCATCCATCTCCCA  300

seq1  CTGATTCATGGTGATTCCTTTCCCTCCCTCCTGTGTCCTAGCCCCAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCATGGTGATTCCTTTCCCTCCCTCCTGTGTCCTAGCCCCAAGAA  350

seq1  ACTCAAGGGTCCTGCTCTGTCTCCCTTTGCCCAATCATTGGCCACTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGGTCCTGCTCTGTCTCCCTTTGCCCAATCATTGGCCACTGGCA  400

seq1  TCTTTATTGATTAAGCAAAAAACAACTGGAGACAGGGACCTTTAGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTGATTAAGCAAAAAACAACTGGAGACAGGGACCTTTAGTGTTC  450

seq1  AGACTCACTGATTCCCAATTGAATCAAAGCATTAGAATCAATCTCCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCACTGATTCCCAATTGAATCAAAGCATTAGAATCAATCTCCAAAA  500

seq1  ACATACATGTGATCCATCTCTATACCATGCAGGGCTCACTGCTTGGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATGTGATCCATCTCTATACCATGCAGGGCTCACTGCTTGGAATC  550

seq1  CCCATACTGAGAAGAATTCTAAAAGGCAGCATCCAAGGGAGGAGTGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTGAGAAGAATTCTAAAAGGCAGCATCCAAGGGAGGAGTGTTTC  600

seq1  AGGAAAACCAGACACCTGGGAATTGTAGCATCTGGGGGTGCTCAGTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACCAGACACCTGGGAATTGTAGCATCTGGGGGTGCTCAGTTCCC  650

seq1  TGCTGCATCCTATTGCACGAGCGAGTCATTGAAGCCAGATTCAATGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATCCTATTGCACGAGCGAGTCATTGAAGCCAGATTCAATGGAAG  700

seq1  GGATCTCTTGGAGGAGTAACAAGAAGATTGATGTAGCTCAGTAGTAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCTTGGAGGAGTAACAAGAAGATTGATGTAGCTCAGTAGTAAATG  750

seq1  ATTGCCCAGCAAGTATGCAGTCCTGAGTTCAATTCCCCTGAAACACACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCAGCAAGTATGCAGTCCTGAGTTCAATTCCCCTGAAACACACAT  800

seq1  ATACACCCAAAAGAACAAATGAAATAAGAGACGTTATTGTAGCCCATTT-  849
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  ATACACCC-AAAGAACAAATGAAATAAGAGACGTTATTGTAGCCCATTTG  849

seq1  GGGGGGGGTGAGCCATGTTTCATACAATATTTCCCACACAAATAATATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGTGAGCCATGTTTCATACAATATTTCCCACACAAATAATATTG  899

seq1  TTTTAGTCTGCTTTCTGTTCCTGTGGT-AAAACACTG-ACCAAAAGTAAC  947
       |||||||||||||||||| ||||||| ||||||||| ||||||||| ||
seq2  -TTTAGTCTGCTTTCTGTT-CTGTGGTAAAAACACTGAACCAAAAGTTAC  947

seq1  TTGTGAATGAAAGGTTTGTTTCATCTTACAGGTTACAG-TCTACGACTGA  996
      ||||| ||||||||||||||||||| |||||| ||||| |||||||||||
seq2  TTGTG-ATGAAAGGTTTGTTTCATC-TACAGG-TACAGTTCTACGACTGA  994

seq1  GGGAAG-CCAAGGCA  1010
      || | | ||||||||
seq2  GGTAGGCCCAAGGCA  1009