BAC Information

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BAC

Clone NameB6Ng01-269A16
Chromosome18 (Build37)
Map Location 45,329,482 - 45,438,026
singlet/doubletdoublet
Overlap genenone
Upstream gene9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457
Downstream geneLOC100042900, Kcnn2, Trim36, LOC100042905, Pggt1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269A16.bB6Ng01-269A16.g
ACCGA071745GA071746
length1,1241,135
definitionB6Ng01-269A16.b B6Ng01-269A16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,436,905 - 45,438,026)(45,329,482 - 45,330,586)
sequence
gaattcccagcctccgtgtcacctaactcttttgtgctgttgaaataaag
tcacagccacgatgagagtaaaaaaagacaaagatatgaactgtagctcc
ccagcaagaggcagaaagttgtcttgcacacaccagtggctgctgttttc
aaagactatttaccacaaagatttctaaatttatctacaaaattctgaac
ctctggtgttggctcgcaagcatttctctctacagcaagtccccaaggtc
attccgatatgtggacatgtttgtaaacctttatctcccataacttccag
ggacgagacttagagaagacaagggctgtccatagcaacacctctgctac
acgcttcatctgtcactttattgtgacagtggtatagtttaaagcactct
gggtctaaagttttaggctaaatacacaaactcaaggaccacaaaggtcc
tgtttcgtaagggcttgttttgtaagcctcatggggatgctgaggtttca
gtctatcagaaaccaggggattctaggaatatgagaatttcagtgctgaa
tccaggatagtgagggtcataccacgccggggcggcttcaccttctgctg
gactggcccatgtgctgctgagtctgcattctgagatgcagctcatcacc
actacaagtatctccttaagtgtcatctaagccagagctgtaaaactgtg
tccatggactcagcatcagtatcagctcaaagctttgtaagaatggaaat
gcggggttttcccctggacactggaccagaacctccaagaagaatgctct
ggaatacagtttccagaagcctgacttgaagcactcccaccttgctttcc
tttccctgtcttcccaatccttcgcaggccaaaatcaggtttctgtttgg
aaacagagatacagaccaggtgataggaagagcccatcagtgctaatttt
ggccagagacattttgaaaagagcaggtgggcagctcagacacttatatg
ctgatcattattttgggccttcacttttgtcaatcatttacctcagaagg
ctggaggaaaagttttaggtccataggaaaactgggagtatgtaataagg
agagccaagtgaagatatccttca

gaattcaaagacttgatatgccagggtgggggaaatgtaggggatcccac
ccactcagaagagaaggggatgatgggaggaagaattgtgggagaggatg
acttcaaggggggcagtaaaggggatgtaaagtgaataagtaaaaataat
aataataaaaattttctttaaaaataaaataaaaagatgctccatatgtg
tgggctaaagaaactttctggtgctggacataactttagtcatattcatc
agactatattgccttcatttttgttgttccaaaacgagcagtgtttcctt
gcctctggatgtcacaaattctttccttctcatttgcttgatcaatgaca
gccagccatttgtcagagagggtggacgagaagacacccccttggatatt
tctaaggtaattcttacaaagattaaaagtaaatattattctatggaaaa
tttatattggagatttactaagaagattttcaaggaaataagtttcttaa
gcatgagaatctagtctcagaatctgaattgtgaaaccaatgaaaagaaa
atcagcctttgagagatgggtaactttagagctactattttatcagtggt
atctgatcctcgtgttatgccttaagttatctttcctgatcattaatcta
cctgaaaagatatatgagtggataataaaaaatatctatgcatttataac
caaattttaagttactgccatctaagagtctgaggtctgggggaaagaag
gatgctctgagattctggcctacagtaaaatcagagaaaggtcaggggtt
gggatatccaggtggggaatgtgtcttcctccaagttcccaatttgaagt
tttcctttaaaaaaaaaaatgtaaggtttggacatttttcgacaccactt
tcttagtacacagaagaccctagatactgaggaaattatttttgtctctc
caaaagcttcaaatacctaagattacatcaacagaacccactatgaaggc
ttcaagaagaagaaaaaccctatagctgttggggtgccttccggttccta
cttagaaaggggtaactagtatactctaccggaagcatatgggagaacca
aagtatagtagcagagactctgacgaaatccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_45436905_45438026
seq2: B6Ng01-269A16.b_43_1166 (reverse)

seq1  TGAA-GATATCTTCACTTGGCTCTTCCTTTATCCATACTCCAGTTTTTCC  49
      |||| |||||||||||||||||| |||||  | ||||||||   ||||||
seq2  TGAAGGATATCTTCACTTGGCTC-TCCTTATTACATACTCCCAGTTTTCC  49

seq1  TATGGACCTAAAACTTTTCCTCCAGCC-TCTGAGGTAAATGATTGACAAA  98
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATGGACCTAAAACTTTTCCTCCAGCCTTCTGAGGTAAATGATTGACAAA  99

seq1  AGTGAAGG-CCAAAATAATGATCAGCATATAAGTGTCTGAGCTGCCCA-C  146
      |||||||| ||||||||||||||||||||||||||||||||||||||| |
seq2  AGTGAAGGCCCAAAATAATGATCAGCATATAAGTGTCTGAGCTGCCCACC  149

seq1  TGCTCTTTTTCAAAATGTCTCTGGCCAAAATTAGCACTGATGGGCTCTTC  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTC-TTTTCAAAATGTCTCTGGCCAAAATTAGCACTGATGGGCTCTTC  198

seq1  CTATCACCTGGTCTGTATCTCTGTTTCCAAACAGAAACCTGATTTTGGCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACCTGGTCTGTATCTCTGTTTCCAAACAGAAACCTGATTTTGGCC  248

seq1  TGCGAAGGATTGGGAAGACAGGGAAAGGAAAGCAAGGTGGGAGTGCTTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAGGATTGGGAAGACAGGGAAAGGAAAGCAAGGTGGGAGTGCTTCA  298

seq1  AGTCAGGCTTCTGGAAACTGTATTCCAGAGCATTCTTCTTGGAGGTTCTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTTCTGGAAACTGTATTCCAGAGCATTCTTCTTGGAGGTTCTG  348

seq1  GTCCAGTGTCCAGGGGAAAACCCCGCATTTCCATTCTTACAAAGCTTTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGTCCAGGGGAAAACCCCGCATTTCCATTCTTACAAAGCTTTGA  398

seq1  GCTGATACTGATGCTGAGTCCATGGACACAGTTTTACAGCTCTGGCTTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACTGATGCTGAGTCCATGGACACAGTTTTACAGCTCTGGCTTAG  448

seq1  ATGACACTTAAGGAGATACTTGTAGTGGTGATGAGCTGCATCTCAGAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACTTAAGGAGATACTTGTAGTGGTGATGAGCTGCATCTCAGAATG  498

seq1  CAGACTCAGCAGCACATGGGCCAGTCCAGCAGAAGGTGAAGCCGCCCCGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGCAGCACATGGGCCAGTCCAGCAGAAGGTGAAGCCGCCCCGG  548

seq1  CGTGGTATGACCCTCACTATCCTGGATTCAGCACTGAAATTCTCATATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTATGACCCTCACTATCCTGGATTCAGCACTGAAATTCTCATATTC  598

seq1  CTAGAATCCCCTGGTTTCTGATAGACTGAAACCTCAGCATCCCCATGAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCCCCTGGTTTCTGATAGACTGAAACCTCAGCATCCCCATGAGG  648

seq1  CTTACAAAACAAGCCCTTACGAAACAGGACCTTTGTGGTCCTTGAGTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAACAAGCCCTTACGAAACAGGACCTTTGTGGTCCTTGAGTTTG  698

seq1  TGTATTTAGCCTAAAACTTTAGACCCAGAGTGCTTTAAACTATACCACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGCCTAAAACTTTAGACCCAGAGTGCTTTAAACTATACCACTG  748

seq1  TCACAATAAAGTGACAGATGAAGCGTGTAGCAGAGGTGTTGCTATGGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAAAGTGACAGATGAAGCGTGTAGCAGAGGTGTTGCTATGGACA  798

seq1  GCCCTTGTCTTCTCTAAGTCTCGTCCCTGGAAGTTATGGGAGATAAAGGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTCTTCTCTAAGTCTCGTCCCTGGAAGTTATGGGAGATAAAGGT  848

seq1  TTACAAACATGTCCACATATCGGAATGACCTTGGGGACTTGCTGTAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAACATGTCCACATATCGGAATGACCTTGGGGACTTGCTGTAGAGA  898

seq1  GAAATGCTTGCGAGCCAACACCAGAGGTTCAGAATTTTGTAGATAAATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTTGCGAGCCAACACCAGAGGTTCAGAATTTTGTAGATAAATTT  948

seq1  AGAAATCTTTGTGGTAAATAGTCTTTGAAAACAGCAGCCACTGGTGTGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTTGTGGTAAATAGTCTTTGAAAACAGCAGCCACTGGTGTGTG  998

seq1  CAAGACAACTTTCTGCCTCTTGCTGGGGAGCTACAGTTCATATCTTTGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAACTTTCTGCCTCTTGCTGGGGAGCTACAGTTCATATCTTTGTC  1048

seq1  TTTTTTTACTCTCATCGTGGCTGTGACTTTATTTCAACAGCACAAAAGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTACTCTCATCGTGGCTGTGACTTTATTTCAACAGCACAAAAGAG  1098

seq1  TTAGGTGACACGGAGGCTGGGAATTC  1122
      ||||||||||||||||||||||||||
seq2  TTAGGTGACACGGAGGCTGGGAATTC  1124


seq1: chr18_45329482_45330586
seq2: B6Ng01-269A16.g_65_1199

seq1  GAATTCAAAGACTTGATATGCCAGGGTGGGGGAAATGTAGGGGATCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGACTTGATATGCCAGGGTGGGGGAAATGTAGGGGATCCCAC  50

seq1  CCACTCAGAAGAGAAGGGGATGATGGGAGGAAGAATTGTGGGAGAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGAAGAGAAGGGGATGATGGGAGGAAGAATTGTGGGAGAGGATG  100

seq1  ACTTCAAGGGGGGCAGTAAAGGGGATGTAAAGTGAATAAGTAAAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGGGGGCAGTAAAGGGGATGTAAAGTGAATAAGTAAAAATAAT  150

seq1  AATAATAAAAATTTTCTTTAAAAATAAAATAAAAAGATGCTCCATATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAAATTTTCTTTAAAAATAAAATAAAAAGATGCTCCATATGTG  200

seq1  TGGGCTAAAGAAACTTTCTGGTGCTGGACATAACTTTAGTCATATTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTAAAGAAACTTTCTGGTGCTGGACATAACTTTAGTCATATTCATC  250

seq1  AGACTATATTGCCTTCATTTTTGTTGTTCCAAAACGAGCAGTGTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATATTGCCTTCATTTTTGTTGTTCCAAAACGAGCAGTGTTTCCTT  300

seq1  GCCTCTGGATGTCACAAATTCTTTCCTTCTCATTTGCTTGATCAATGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGATGTCACAAATTCTTTCCTTCTCATTTGCTTGATCAATGACA  350

seq1  GCCAGCCATTTGTCAGAGAGGGTGGACGAGAAGACACCCCCTTGGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCATTTGTCAGAGAGGGTGGACGAGAAGACACCCCCTTGGATATT  400

seq1  TCTAAGGTAATTCTTACAAAGATTAAAAGTAAATATTATTCTATGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTAATTCTTACAAAGATTAAAAGTAAATATTATTCTATGGAAAA  450

seq1  TTTATATTGGAGATTTACTAAGAAGATTTTCAAGGAAATAAGTTTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTGGAGATTTACTAAGAAGATTTTCAAGGAAATAAGTTTCTTAA  500

seq1  GCATGAGAATCTAGTCTCAGAATCTGAATTGTGAAACCAATGAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGAATCTAGTCTCAGAATCTGAATTGTGAAACCAATGAAAAGAAA  550

seq1  ATCAGCCTTTGAGAGATGGGTAACTTTAGAGCTACTATTTTATCAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTTTGAGAGATGGGTAACTTTAGAGCTACTATTTTATCAGTGGT  600

seq1  ATCTGATCCTCGTGTTATGCCTTAAGTTATCTTTCCTGATCATTAATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCCTCGTGTTATGCCTTAAGTTATCTTTCCTGATCATTAATCTA  650

seq1  CCTGAAAAGATATATGAGTGGATAATAAAAAATATCTATGCATTTATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGATATATGAGTGGATAATAAAAAATATCTATGCATTTATAAC  700

seq1  CAAATTTTAAGTTACTGCCATCTAAGAGTCTGAGGTCT-GGGGAAAGAAG  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAATTTTAAGTTACTGCCATCTAAGAGTCTGAGGTCTGGGGGAAAGAAG  750

seq1  GATGCTCTGAGATTCTGGCCTACAGTAAAATCAGAGAAAGGTCAGGGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTGAGATTCTGGCCTACAGTAAAATCAGAGAAAGGTCAGGGGTT  800

seq1  GGGATATCCAGGT-GGGAATGTGTC-TCCTCCAAGTT-CCAATTTG-AGT  845
      ||||||||||||| ||||||||||| ||||||||||| |||||||| |||
seq2  GGGATATCCAGGTGGGGAATGTGTCTTCCTCCAAGTTCCCAATTTGAAGT  850

seq1  TTTCCTTT--AAAAAAAAATGT-AGGTTTGGACA-TTTTCGACAACAC-T  890
      ||||||||  |||||||||||| ||||||||||| ||||||||| ||| |
seq2  TTTCCTTTAAAAAAAAAAATGTAAGGTTTGGACATTTTTCGACACCACTT  900

seq1  TCTTAGTACACAGAAGACCCTAGATACTGAGGAAATTATTTTTGTCTC-C  939
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTAGTACACAGAAGACCCTAGATACTGAGGAAATTATTTTTGTCTCTC  950

seq1  CAAAAGCTCAAAATACCTAAGATACAATTCACAGA--CCAC-ATGAAG--  984
      ||||||||  |||||||||||||   ||  |||||  |||| ||||||  
seq2  CAAAAGCTTCAAATACCTAAGATTACATCAACAGAACCCACTATGAAGGC  1000

seq1  CTCAAGAAGAAGAAAAACC--AAAG-TGT--GGGTG-CTTC--GGTCCTA  1026
       ||||||||||||||||||  | || |||  ||||| ||||  | |||||
seq2  TTCAAGAAGAAGAAAAACCCTATAGCTGTTGGGGTGCCTTCCGGTTCCTA  1050

seq1  CTTAGAAAGGGG--AATAAGATACTC-ACAGG-AGCAAATATGGAGA--C  1070
      ||||||||||||  | ||  |||||| || || |||| ||  |||||  |
seq2  CTTAGAAAGGGGTAACTAGTATACTCTACCGGAAGCATAT-GGGAGAACC  1099

seq1  AAAGTATAG-AGCAGAGACT-GAAGGAAATCCCATCC  1105
      ||||||||| ||||||||||   | ||||| ||||||
seq2  AAAGTATAGTAGCAGAGACTCTGACGAAAT-CCATCC  1135


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