BAC Information

Click to search

BAC

Clone NameB6Ng01-269L16
Chromosome18 (Build37)
Map Location 23,719,449 - 23,837,911
singlet/doubletdoublet
Overlap geneDtna
Upstream geneNol4, LOC100040579, LOC665797
Downstream geneMapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-269L16.bB6Ng01-269L16.g
ACCGA072247GA072248
length959960
definitionB6Ng01-269L16.b B6Ng01-269L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,836,958 - 23,837,911)(23,719,449 - 23,720,403)
sequence
gaattccataaggccctttctctcctctttatacacaggctttcttcggc
ggtgtgtgggtggtgggaactcacctgggactttattaagttttttgcca
tttacagttaattttagtgtcatgatattttcaatcacaatactgctgtg
agggtggattatgtgtgatattgtgatattgtccccatcatgtatttttt
gttgttggtttttttttttgttgttgtttttgttttgagacagagtttct
ctgtgtagtcctggctgtcctggaactcactttgtagaccaggctagcct
ccaacccacctgcctctacctcccaagtgctgggatcaaacgcgtgtgtc
accatcacctggctcatgtattttttttcataaataaaacttaaacatat
atcctgaatttaaaaaaaaatctgcacttttatgaaaaataacacctctt
accaagaaatcatgatttgtgtggttgaaaaattaaaggcatgtctcact
gtaacccatcacagggcgtaggccatctgacgtcacacagctctgtcttg
cccatctcctacggggatcacccacttgattaggaatgttaggataccat
tcccaggtctgagtcctttttactcccatcactcaggagactgacgcaaa
gtcattgctgtgagatcaaaggcaggctgcctttacgcgtaccttcagga
ttacttgcgctacagtgtgagagcctgtcacaatacttcatgaggaaaaa
aaataatgaaaaatgtataggttcacattgcaaaaaagttgacattccat
gtaataggagataaaaattctatttcatgtgatcaatatcgctgaattcg
tatcacttgacactccacatgatatgcagtttcacagcctttgatctgca
tacttggctttaccacatgcgcctgatcgggacatgtccaattacatcaa
tggcactgg
gaattcatttctaatttcaagtcacgccctatcccagatgttcttgtcca
tcacaatcacccagagtgatgcttgaatctagaaatgccctggacacgcc
aagacctgtggaaggagacagcatagttagaaatcgaccgattctgtgaa
gaagagtcctggttcatgcaaccaattcattccctctagctgtggatatg
agtgtctaggcatgacagtcagaaaaggaaaataagcattaaaaaatgta
tggaatgcaaattctagataaaatgtataaataaatatgcatgaattttt
aaatagagccagttgtttatgataacaagaaatatgagatgtttcttcgt
tacagactttgctttactttaagtttcagatcaataaacttctagttgta
tcccatgaggacagaatctgagacaccatcatccctccttgcttttcgtt
tttcattcttggctgatcctcctcctggagcatgacgctccccccccgcc
acccccccccaccccatcttcagctttaacttctcaatatgcttttagga
ggcaatgtgagttttaccttcccctccaagtagtcccaagtttccagcca
gtgatggcatccctggattttagagctcctgtggcagccgaagttttctc
accatagctacagggcttatcataactcagaggtgtgtgtatcagccttc
acctgatcctgactgtgatctcacgtgggcatcaccacccctgtggttag
gatttcctgtcagtcacaaataacatcaaccacaattcagtccagatcct
taaaaaaagtatctgttgggattttatttcttttcaaactattatggact
ctcatttcttctcccaggtctgtaaatataagcatatgtcagccctttct
ccatatgctatagacacaacgttgtcatagataaaatggttagtgatggt
gtgtaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_23836958_23837911
seq2: B6Ng01-269L16.b_43_1001 (reverse)

seq1  CCAGTGCCATTGTCTGT-CCTCCAAGGGTACCAAACACACACACGTGGTA  49
      ||||||||||||  |||   |  |   || || | ||  | || ||||||
seq2  CCAGTGCCATTG-ATGTAATTGGACATGTCCCGATCAGGCGCATGTGGTA  49

seq1  AACAGATATATGCAGATGAAAGACTCTTAAACATGAAACTATTTTTGTTT  99
      ||   |  ||||||||| |||| || | ||||   | |  || |    | 
seq2  AAGCCAAGTATGCAGATCAAAGGCTGTGAAACTGCATATCATGTGGAGTG  99

seq1  TTAAGTAACAAGAATTCCTTGATATTTATCA-ATG-AATAGAATTTTCAT  147
      | |||| | | ||||||   |||||| |||| ||| ||||||||||| ||
seq2  TCAAGTGATACGAATTCAGCGATATTGATCACATGAAATAGAATTTTTAT  149

seq1  CTCCTAATA-AAGAAATCTAAACTTTTTGGCAATGATAA-TTTTACTTTT  195
      |||||| || | | ||| | |||||||| ||||||  ||  | ||| |||
seq2  CTCCTATTACATGGAATGTCAACTTTTTTGCAATGTGAACCTATACATTT  199

seq1  CTTCTCA-TTTTTTTCTTTCTTTTCTTCTGTGACAGGCTCTCACACTGTA  244
       |  | | |||||||| |  |    |  ||||||||||||||||||||||
seq2  TTCATTATTTTTTTTCCTCATGAAGTATTGTGACAGGCTCTCACACTGTA  249

seq1  GCCCAAGTTATCCTAAAATTCTGTGTAAA-CCAGGCTGCCTTTGATCTCA  293
      || ||||| ||||| ||  |  | |||||  ||| |||||||||||||||
seq2  GCGCAAGTAATCCTGAAGGTACGCGTAAAGGCAGCCTGCCTTTGATCTCA  299

seq1  CAGCAATGAATTTGCCTCAGTCTCCTGAGTGCTGGGATTAAAAAGGACTT  343
      ||||||||| ||||| ||||||||||||||| ||||| ||||||||||| 
seq2  CAGCAATGACTTTGCGTCAGTCTCCTGAGTGATGGGAGTAAAAAGGACTC  349

seq1  TGACCTGGGAATGGTATCCTAACAACTCCTAATCAATTGGCTGATCCCCG  393
       |||||||||||||||||||||| | |||||||||| ||| |||||||||
seq2  AGACCTGGGAATGGTATCCTAAC-ATTCCTAATCAAGTGGGTGATCCCCG  398

seq1  TAGGAGATTGGCAAGACAGAGCTGTCTGCTGTCAGATGGCCTACACACTG  443
      |||||||| |||||||||||||||| ||  |||||||||||||| | |||
seq2  TAGGAGATGGGCAAGACAGAGCTGTGTGACGTCAGATGGCCTACGCCCTG  448

seq1  TGATGGCTTACAGTGAGACATGCCTTTAATTTTTCAACCACACAAATCAT  493
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTTACAGTGAGACATGCCTTTAATTTTTCAACCACACAAATCAT  498

seq1  GATTTCTTGGTAAGAGGTGTTATTTTTCATAAAAGTGCAGATTTTTTTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTGGTAAGAGGTGTTATTTTTCATAAAAGTGCAGATTTTTTTTT  548

seq1  AAATTCAGGATATATGTTTTAGTTTTATTTATGAAAAAAAATACATGAGC  593
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAATTCAGGATATATGTTTAAGTTTTATTTATGAAAAAAAATACATGAGC  598

seq1  CAGGTGATGGTGACACACGCGTTTGATCCCAGCACTTGGGAGGTAGAGGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATGGTGACACACGCGTTTGATCCCAGCACTTGGGAGGTAGAGGC  648

seq1  AGGTGGGTTCGAGGCTAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  693
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTTGGAGGCTAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  698

seq1  GGACTACACAGAGAAACTCTGTCTCAAAACAAAAACAACAACAAAAAAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACACAGAGAAACTCTGTCTCAAAACAAAAACAACAACAAAAAAAA  748

seq1  AAACCAACAACAAAAAATACATGATGGGGACAATATCACAATATCACACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACAACAAAAAATACATGATGGGGACAATATCACAATATCACACA  798

seq1  TAATCCACCCTCACAGCAGTATTGTGATTGAAAATATCATGACACTAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACCCTCACAGCAGTATTGTGATTGAAAATATCATGACACTAAAA  848

seq1  TTAACTGTAAATGGCAAAAAACTTAATAAAGTCCCAGGTGAGTTCCCACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTAAATGGCAAAAAACTTAATAAAGTCCCAGGTGAGTTCCCACC  898

seq1  ACCCACACACCGCCGAAGAAAGCCTGTGTATAAAGAGGAGAGAAAGGGCC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCGCCGAAGAAAGCCTGTGTATAAAGAGGAGAGAAAGGGCC  948

seq1  TTATGGAATTC  954
      |||||||||||
seq2  TTATGGAATTC  959

seq1: chr18_23719449_23720403
seq2: B6Ng01-269L16.g_65_1024

seq1  GAATTCATTTCTAATTTCAAGTCACGCCCTATCCCAGATGTTCTTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTAATTTCAAGTCACGCCCTATCCCAGATGTTCTTGTCCA  50

seq1  TCACAATCACCCAGAGTGATGCTTGAATCTAGAAATGCCCTGGACACGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATCACCCAGAGTGATGCTTGAATCTAGAAATGCCCTGGACACGCC  100

seq1  AAGACCTGTGGAAGGAGACAGCATAGTTAGAAATCGACCGATTCTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGTGGAAGGAGACAGCATAGTTAGAAATCGACCGATTCTGTGAA  150

seq1  GAAGAGTCCTGGTTCATGCAACCAATTCATTCCCTCTAGCTGTGGATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCCTGGTTCATGCAACCAATTCATTCCCTCTAGCTGTGGATATG  200

seq1  AGTGTCTAGGCATGACAGTCAGAAAAGGAAAATAAGCATTAAAAAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTAGGCATGACAGTCAGAAAAGGAAAATAAGCATTAAAAAATGTA  250

seq1  TGGAATGCAAATTCTAGATAAAATGTATAAATAAATATGCATGAATTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGCAAATTCTAGATAAAATGTATAAATAAATATGCATGAATTTTT  300

seq1  AAATAGAGCCAGTTGTTTATGATAACAAGAAATATGAGATGTTTCTTCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCCAGTTGTTTATGATAACAAGAAATATGAGATGTTTCTTCGT  350

seq1  TACAGACTTTGCTTTACTTTAAGTTTCAGATCAATAAACTTCTAGTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACTTTGCTTTACTTTAAGTTTCAGATCAATAAACTTCTAGTTGTA  400

seq1  TCCCATGAGGACAGAATCTGAGACACCATCATCCCTCCTTGCTTTTCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAGGACAGAATCTGAGACACCATCATCCCTCCTTGCTTTTCGTT  450

seq1  TTTCATTCTTGGCTGATCCTCCTCCTGGAGCATGACGCTCCCCCCCCGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTTGGCTGATCCTCCTCCTGGAGCATGACGCTCCCCCCCCGCC  500

seq1  CCCCCCCCCCACCCCATCTTCAGCTTTAACTTCTCAATATGCTTTTAGGA  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCCCCACCCCATCTTCAGCTTTAACTTCTCAATATGCTTTTAGGA  550

seq1  GGCAATGTGAGTTTTACCTTCCCCTCCAAGTAGTCCCAAGTTTCCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTGAGTTTTACCTTCCCCTCCAAGTAGTCCCAAGTTTCCAGCCA  600

seq1  GTGATGGCATCCCTGGA-TTTAGAGCTCCTGTGGCAGCCGAAGTTTTCTC  649
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGATGGCATCCCTGGATTTTAGAGCTCCTGTGGCAGCCGAAGTTTTCTC  650

seq1  ACCATAGCTACAGGGCTTATCATAACTCAGAGGTGTGTGTATCAGCCTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGCTACAGGGCTTATCATAACTCAGAGGTGTGTGTATCAGCCTTC  700

seq1  ACCTGATCCTGACTGTGATCTCACGTGGGCATCACCACCCCTGTGGTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCCTGACTGTGATCTCACGTGGGCATCACCACCCCTGTGGTTAG  750

seq1  GATTTCCTGTCAGTCACAAATAACATCAACCACAATTCAGTCCAGATCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTGTCAGTCACAAATAACATCAACCACAATTCAGTCCAGATCCT  800

seq1  TAAAAAAAGTATCTGTT-GGATTTTATTTCTTTTCAAACTATTATGGACT  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAAAAAGTATCTGTTGGGATTTTATTTCTTTTCAAACTATTATGGACT  850

seq1  CTCATTTCTTCTCCCAGGTCTGTAAATATAAGCATATGTCAG-CCTTTCT  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCATTTCTTCTCCCAGGTCTGTAAATATAAGCATATGTCAGCCCTTTCT  900

seq1  CCATATGCTATAGACACAACG-TGTAATAGAT-AAATGGTTAGTGATGGT  945
      ||||||||||||||||||||| ||| |||||| |||||||||||||||||
seq2  CCATATGCTATAGACACAACGTTGTCATAGATAAAATGGTTAGTGATGGT  950

seq1  GTGTTAAAAA  955
      |||| |||||
seq2  GTGTAAAAAA  960